Gene
KWMTBOMO13266
Pre Gene Modal
BGIBMGA004734
Annotation
PREDICTED:_RPII140-upstream_gene_protein_[Amyelois_transitella]
Full name
RPII140-upstream gene protein
+ More
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit beta
Location in the cell
PlasmaMembrane Reliability : 2.062
Sequence
CDS
ATGATCCGAACGGTGATCAGACCTCTGCCTGGAGGCCCTCAGACAGGCTGGGATCGGGTTAAAGCCATGTATAAAAAAAACGAATTCGACGAAGTTTCTCCTGAACTGCATACAGTTGTGCAATCCACATTGTGCGGTGCATTTGTTGGTGTTTGTTTCGGAGGATTTGTCTCATCTCGAGAAGCCTACTTGTATTTTATTGAAAATAATCAAGCAACCGCTTATAAAACAGTAGGCGATGCAAAGAAAAAACTGCAAGACTATGTAACAATTGGATTTGCCAAAGGTGCCTACAAGTGGGGATGGAAATTAAGTATTTTTACAGGAATGTTCAGTTTGATAGCCACAACAATATCTGCATATCGTGGAGATACAACACTCATCGAGTACACAACTGCAGGTGCACTTACCGGAGCATTGTATAAAGCAAATTTAGGATTGACTGCTATGATTGTTGGTGGTTCCCTAGGAGCTGTATTAAGTACAATAGGTGGACTTTTAATTATTGGAATATTAAAAATTACTGGTGTTCGTATGAGCGATATACGACAAGCATTATACAAAATCAAAGAATCTAGGACTGATCACTATAATCAAGCAATAGAGAAATCATCAAAAATCAAACACGACGATTTGACAAGACATCATGACACAATAGTCCAAGAGCAAGGTGAAGTGAAGATTGAGGAAGTTTAA
Protein
MIRTVIRPLPGGPQTGWDRVKAMYKKNEFDEVSPELHTVVQSTLCGAFVGVCFGGFVSSREAYLYFIENNQATAYKTVGDAKKKLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAGALTGALYKANLGLTAMIVGGSLGAVLSTIGGLLIIGILKITGVRMSDIRQALYKIKESRTDHYNQAIEKSSKIKHDDLTRHHDTIVQEQGEVKIEEV
Summary
Description
Essential for viability.
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Catalytic Activity
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
Similarity
Belongs to the RNA polymerase beta chain family.
Keywords
Complete proteome
Membrane
Reference proteome
Transmembrane
Transmembrane helix
Feature
chain RPII140-upstream gene protein
Uniprot
H9J5E4
A0A2A4IV97
A0A2H1V275
A0A1E1WV52
A0A194PZ18
S4PC06
+ More
A0A212FB14 A0A194R212 A0A0V0GAK6 A0A023FA00 A0A224XXW9 A0A0P4VMC3 A0A2M4AU32 A0A2M4AU76 A0A2M4AU70 W5JHD4 A0A3R7PEQ0 A0A067R2R0 A0A2M4BUX6 T1EAX2 A0A2M3ZAC8 A0A182FP33 A0A2M4CG99 A0A1S4FX52 Q16KZ3 A0A2P8XZR1 A0A1A9VG09 A0A023ENN0 B3LYR4 A0A0K8TKI9 A0A182GLD9 B0W5Z7 A0A1Q3FI42 B4R0H6 A0A182YS17 A0A0A9YM68 A0A2M4CNP2 W8BLI7 Q298X5 B4G4T9 A0A182MK69 B4HF53 A0A084VW40 A0A182P2D9 A0A1W4USW2 A0A182SPP0 B4N9I2 A0A182VYT5 A0A182QC00 A0A182RQ03 A0A0L0BN56 A0A182U710 A0A182J2D5 A0A182N5G5 Q7PXJ1 A0A182X9W8 A0A3B0KQG4 A0A182VAU6 A0A182HKU8 B4M039 A0A0B4KFZ0 P81928 B4KDW6 A0A0M4EKD8 A0A182JRW1 A0A1I8P7W6 A0A1Y1MDP3 V5GN25 A0A0K8WHU6 A0A034VZ60 A0A1B0GMI0 B3P0L9 A0A1L8DZT9 A0A1W4XCC4 A0A1J1HJE7 B4PTC1 A0A1L8E0B3 B4K014 A0A1I8MHV4 R4WJL9 D6X1W9 A0A1B0CL09 A0A1B0B2R4 A0A1B6KWM2 A0A1A9ZYZ6 A0A1B0FEH3 A0A0C9R514
A0A212FB14 A0A194R212 A0A0V0GAK6 A0A023FA00 A0A224XXW9 A0A0P4VMC3 A0A2M4AU32 A0A2M4AU76 A0A2M4AU70 W5JHD4 A0A3R7PEQ0 A0A067R2R0 A0A2M4BUX6 T1EAX2 A0A2M3ZAC8 A0A182FP33 A0A2M4CG99 A0A1S4FX52 Q16KZ3 A0A2P8XZR1 A0A1A9VG09 A0A023ENN0 B3LYR4 A0A0K8TKI9 A0A182GLD9 B0W5Z7 A0A1Q3FI42 B4R0H6 A0A182YS17 A0A0A9YM68 A0A2M4CNP2 W8BLI7 Q298X5 B4G4T9 A0A182MK69 B4HF53 A0A084VW40 A0A182P2D9 A0A1W4USW2 A0A182SPP0 B4N9I2 A0A182VYT5 A0A182QC00 A0A182RQ03 A0A0L0BN56 A0A182U710 A0A182J2D5 A0A182N5G5 Q7PXJ1 A0A182X9W8 A0A3B0KQG4 A0A182VAU6 A0A182HKU8 B4M039 A0A0B4KFZ0 P81928 B4KDW6 A0A0M4EKD8 A0A182JRW1 A0A1I8P7W6 A0A1Y1MDP3 V5GN25 A0A0K8WHU6 A0A034VZ60 A0A1B0GMI0 B3P0L9 A0A1L8DZT9 A0A1W4XCC4 A0A1J1HJE7 B4PTC1 A0A1L8E0B3 B4K014 A0A1I8MHV4 R4WJL9 D6X1W9 A0A1B0CL09 A0A1B0B2R4 A0A1B6KWM2 A0A1A9ZYZ6 A0A1B0FEH3 A0A0C9R514
EC Number
2.7.7.6
Pubmed
19121390
26354079
23622113
22118469
25474469
27129103
+ More
20920257 23761445 24845553 17510324 29403074 24945155 17994087 26369729 26483478 25244985 25401762 26823975 24495485 15632085 24438588 26108605 12364791 14747013 17210077 18057021 10731132 12537568 12537572 12537573 12537574 16110336 17569856 17569867 1905256 12537569 28004739 25348373 17550304 25315136 23691247 18362917 19820115
20920257 23761445 24845553 17510324 29403074 24945155 17994087 26369729 26483478 25244985 25401762 26823975 24495485 15632085 24438588 26108605 12364791 14747013 17210077 18057021 10731132 12537568 12537572 12537573 12537574 16110336 17569856 17569867 1905256 12537569 28004739 25348373 17550304 25315136 23691247 18362917 19820115
EMBL
BABH01039191
NWSH01007057
PCG63112.1
ODYU01000346
SOQ34940.1
GDQN01011445
+ More
GDQN01000196 JAT79609.1 JAT90858.1 KQ459586 KPI97994.1 GAIX01004366 JAA88194.1 AGBW02009387 OWR50935.1 KQ460883 KPJ11290.1 GECL01001264 JAP04860.1 GBBI01000405 JAC18307.1 GFTR01003507 JAW12919.1 GDKW01003158 JAI53437.1 GGFK01010970 MBW44291.1 GGFK01011010 MBW44331.1 GGFK01011009 MBW44330.1 ADMH02001372 ETN62728.1 QCYY01000609 ROT84027.1 KK852801 KDR16313.1 GGFJ01007610 MBW56751.1 GAMD01000688 JAB00903.1 GGFM01004701 MBW25452.1 GGFL01000165 MBW64343.1 CH477930 EAT34978.1 PYGN01001120 PYGN01000153 PSN37424.1 PSN52642.1 GAPW01003063 JAC10535.1 CH902617 EDV44030.1 GDAI01002784 JAI14819.1 JXUM01071680 KQ562678 KXJ75343.1 DS231845 EDS35984.1 GFDL01007818 JAV27227.1 CM000364 EDX12991.1 GBHO01010878 GBRD01011258 GBRD01011257 GDHC01020328 GDHC01010270 GDHC01009473 JAG32726.1 JAG54566.1 JAP98300.1 JAQ08359.1 JAQ09156.1 GGFL01002768 MBW66946.1 GAMC01012334 JAB94221.1 CM000070 EAL27830.1 CH479179 EDW24605.1 AXCM01015457 CH480815 EDW42227.1 ATLV01017439 KE525168 KFB42184.1 CH964232 EDW81658.1 AXCN02001171 JRES01001623 KNC21437.1 AAAB01008987 EAA01763.5 OUUW01000013 SPP88086.1 APCN01000869 CH940650 EDW68289.1 KRF83767.1 AE014297 AGB95942.1 M62975 AY058577 AAL13806.1 CH933806 EDW14963.1 CP012526 ALC45552.1 GEZM01034446 JAV83793.1 GALX01002962 JAB65504.1 GDHF01001874 JAI50440.1 GAKP01012114 JAC46838.1 AJVK01024552 CH954181 EDV48845.1 GFDF01002150 JAV11934.1 CVRI01000006 CRK88176.1 CM000160 EDW97620.1 GFDF01002149 JAV11935.1 CH916384 EDV91616.1 AK417760 BAN20975.1 KQ971371 EFA10175.1 AJWK01016825 JXJN01007687 GEBQ01024139 GEBQ01022984 JAT15838.1 JAT16993.1 CCAG010001986 GBYB01001936 GBYB01001937 JAG71703.1 JAG71704.1
GDQN01000196 JAT79609.1 JAT90858.1 KQ459586 KPI97994.1 GAIX01004366 JAA88194.1 AGBW02009387 OWR50935.1 KQ460883 KPJ11290.1 GECL01001264 JAP04860.1 GBBI01000405 JAC18307.1 GFTR01003507 JAW12919.1 GDKW01003158 JAI53437.1 GGFK01010970 MBW44291.1 GGFK01011010 MBW44331.1 GGFK01011009 MBW44330.1 ADMH02001372 ETN62728.1 QCYY01000609 ROT84027.1 KK852801 KDR16313.1 GGFJ01007610 MBW56751.1 GAMD01000688 JAB00903.1 GGFM01004701 MBW25452.1 GGFL01000165 MBW64343.1 CH477930 EAT34978.1 PYGN01001120 PYGN01000153 PSN37424.1 PSN52642.1 GAPW01003063 JAC10535.1 CH902617 EDV44030.1 GDAI01002784 JAI14819.1 JXUM01071680 KQ562678 KXJ75343.1 DS231845 EDS35984.1 GFDL01007818 JAV27227.1 CM000364 EDX12991.1 GBHO01010878 GBRD01011258 GBRD01011257 GDHC01020328 GDHC01010270 GDHC01009473 JAG32726.1 JAG54566.1 JAP98300.1 JAQ08359.1 JAQ09156.1 GGFL01002768 MBW66946.1 GAMC01012334 JAB94221.1 CM000070 EAL27830.1 CH479179 EDW24605.1 AXCM01015457 CH480815 EDW42227.1 ATLV01017439 KE525168 KFB42184.1 CH964232 EDW81658.1 AXCN02001171 JRES01001623 KNC21437.1 AAAB01008987 EAA01763.5 OUUW01000013 SPP88086.1 APCN01000869 CH940650 EDW68289.1 KRF83767.1 AE014297 AGB95942.1 M62975 AY058577 AAL13806.1 CH933806 EDW14963.1 CP012526 ALC45552.1 GEZM01034446 JAV83793.1 GALX01002962 JAB65504.1 GDHF01001874 JAI50440.1 GAKP01012114 JAC46838.1 AJVK01024552 CH954181 EDV48845.1 GFDF01002150 JAV11934.1 CVRI01000006 CRK88176.1 CM000160 EDW97620.1 GFDF01002149 JAV11935.1 CH916384 EDV91616.1 AK417760 BAN20975.1 KQ971371 EFA10175.1 AJWK01016825 JXJN01007687 GEBQ01024139 GEBQ01022984 JAT15838.1 JAT16993.1 CCAG010001986 GBYB01001936 GBYB01001937 JAG71703.1 JAG71704.1
Proteomes
UP000005204
UP000218220
UP000053268
UP000007151
UP000053240
UP000000673
+ More
UP000283509 UP000027135 UP000069272 UP000008820 UP000245037 UP000078200 UP000007801 UP000069940 UP000249989 UP000002320 UP000000304 UP000076408 UP000001819 UP000008744 UP000075883 UP000001292 UP000030765 UP000075885 UP000192221 UP000075901 UP000007798 UP000075920 UP000075886 UP000075900 UP000037069 UP000075902 UP000075880 UP000075884 UP000007062 UP000076407 UP000268350 UP000075903 UP000075840 UP000008792 UP000000803 UP000009192 UP000092553 UP000075881 UP000095300 UP000092462 UP000008711 UP000192223 UP000183832 UP000002282 UP000001070 UP000095301 UP000007266 UP000092461 UP000092460 UP000092445 UP000092444
UP000283509 UP000027135 UP000069272 UP000008820 UP000245037 UP000078200 UP000007801 UP000069940 UP000249989 UP000002320 UP000000304 UP000076408 UP000001819 UP000008744 UP000075883 UP000001292 UP000030765 UP000075885 UP000192221 UP000075901 UP000007798 UP000075920 UP000075886 UP000075900 UP000037069 UP000075902 UP000075880 UP000075884 UP000007062 UP000076407 UP000268350 UP000075903 UP000075840 UP000008792 UP000000803 UP000009192 UP000092553 UP000075881 UP000095300 UP000092462 UP000008711 UP000192223 UP000183832 UP000002282 UP000001070 UP000095301 UP000007266 UP000092461 UP000092460 UP000092445 UP000092444
Pfam
Interpro
IPR007645
RNA_pol_Rpb2_3
+ More
IPR007646 RNA_pol_Rpb2_4
IPR037033 DNA-dir_RNAP_su2_hyb_sf
IPR014724 RNA_pol_RPB2_OB-fold
IPR007641 RNA_pol_Rpb2_7
IPR007644 RNA_pol_bsu_protrusion
IPR037034 RNA_pol_Rpb2_2_sf
IPR007120 DNA-dir_RNAP_su2_dom
IPR007642 RNA_pol_Rpb2_2
IPR007121 RNA_pol_bsu_CS
IPR015712 DNA-dir_RNA_pol_su2
IPR007647 RNA_pol_Rpb2_5
IPR007646 RNA_pol_Rpb2_4
IPR037033 DNA-dir_RNAP_su2_hyb_sf
IPR014724 RNA_pol_RPB2_OB-fold
IPR007641 RNA_pol_Rpb2_7
IPR007644 RNA_pol_bsu_protrusion
IPR037034 RNA_pol_Rpb2_2_sf
IPR007120 DNA-dir_RNAP_su2_dom
IPR007642 RNA_pol_Rpb2_2
IPR007121 RNA_pol_bsu_CS
IPR015712 DNA-dir_RNA_pol_su2
IPR007647 RNA_pol_Rpb2_5
Gene 3D
ProteinModelPortal
H9J5E4
A0A2A4IV97
A0A2H1V275
A0A1E1WV52
A0A194PZ18
S4PC06
+ More
A0A212FB14 A0A194R212 A0A0V0GAK6 A0A023FA00 A0A224XXW9 A0A0P4VMC3 A0A2M4AU32 A0A2M4AU76 A0A2M4AU70 W5JHD4 A0A3R7PEQ0 A0A067R2R0 A0A2M4BUX6 T1EAX2 A0A2M3ZAC8 A0A182FP33 A0A2M4CG99 A0A1S4FX52 Q16KZ3 A0A2P8XZR1 A0A1A9VG09 A0A023ENN0 B3LYR4 A0A0K8TKI9 A0A182GLD9 B0W5Z7 A0A1Q3FI42 B4R0H6 A0A182YS17 A0A0A9YM68 A0A2M4CNP2 W8BLI7 Q298X5 B4G4T9 A0A182MK69 B4HF53 A0A084VW40 A0A182P2D9 A0A1W4USW2 A0A182SPP0 B4N9I2 A0A182VYT5 A0A182QC00 A0A182RQ03 A0A0L0BN56 A0A182U710 A0A182J2D5 A0A182N5G5 Q7PXJ1 A0A182X9W8 A0A3B0KQG4 A0A182VAU6 A0A182HKU8 B4M039 A0A0B4KFZ0 P81928 B4KDW6 A0A0M4EKD8 A0A182JRW1 A0A1I8P7W6 A0A1Y1MDP3 V5GN25 A0A0K8WHU6 A0A034VZ60 A0A1B0GMI0 B3P0L9 A0A1L8DZT9 A0A1W4XCC4 A0A1J1HJE7 B4PTC1 A0A1L8E0B3 B4K014 A0A1I8MHV4 R4WJL9 D6X1W9 A0A1B0CL09 A0A1B0B2R4 A0A1B6KWM2 A0A1A9ZYZ6 A0A1B0FEH3 A0A0C9R514
A0A212FB14 A0A194R212 A0A0V0GAK6 A0A023FA00 A0A224XXW9 A0A0P4VMC3 A0A2M4AU32 A0A2M4AU76 A0A2M4AU70 W5JHD4 A0A3R7PEQ0 A0A067R2R0 A0A2M4BUX6 T1EAX2 A0A2M3ZAC8 A0A182FP33 A0A2M4CG99 A0A1S4FX52 Q16KZ3 A0A2P8XZR1 A0A1A9VG09 A0A023ENN0 B3LYR4 A0A0K8TKI9 A0A182GLD9 B0W5Z7 A0A1Q3FI42 B4R0H6 A0A182YS17 A0A0A9YM68 A0A2M4CNP2 W8BLI7 Q298X5 B4G4T9 A0A182MK69 B4HF53 A0A084VW40 A0A182P2D9 A0A1W4USW2 A0A182SPP0 B4N9I2 A0A182VYT5 A0A182QC00 A0A182RQ03 A0A0L0BN56 A0A182U710 A0A182J2D5 A0A182N5G5 Q7PXJ1 A0A182X9W8 A0A3B0KQG4 A0A182VAU6 A0A182HKU8 B4M039 A0A0B4KFZ0 P81928 B4KDW6 A0A0M4EKD8 A0A182JRW1 A0A1I8P7W6 A0A1Y1MDP3 V5GN25 A0A0K8WHU6 A0A034VZ60 A0A1B0GMI0 B3P0L9 A0A1L8DZT9 A0A1W4XCC4 A0A1J1HJE7 B4PTC1 A0A1L8E0B3 B4K014 A0A1I8MHV4 R4WJL9 D6X1W9 A0A1B0CL09 A0A1B0B2R4 A0A1B6KWM2 A0A1A9ZYZ6 A0A1B0FEH3 A0A0C9R514
Ontologies
PANTHER
Topology
Subcellular location
Membrane
Length:
231
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
57.15207
Exp number, first 60 AAs:
12.44415
Total prob of N-in:
0.39601
POSSIBLE N-term signal
sequence
inside
1 - 99
TMhelix
100 - 122
outside
123 - 149
TMhelix
150 - 172
inside
173 - 231
Population Genetic Test Statistics
Pi
235.591315
Theta
150.061917
Tajima's D
1.967867
CLR
0
CSRT
0.876006199690015
Interpretation
Uncertain
