Gene

KWMTBOMO13253

Annotation

PREDICTED:_piggyBac_transposable_element-derived_protein_3-like?_partial_[Bombyx_mori]

Location

Bomo_Chr22(-):11670395-11672379      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.013

CDS

ATGTGCGAGCCTTTAGATATGGATTTAGCTATGGAGGACTTCGAATTTACGCAGGATGAATGGAAGCAAATCAACGCGTTAGAAATTTCTTTTTCGATCGCTTCTATAAACAATGACGCTCTCGTAGAATCGGATAGTGAACCCATGCAATTACCGAAAAAGAAAAGACGTTTGGTTATCGCAAGTGATAGTGATAGTGACAGTGAGTCGGCTGAAAATTTTGTTGCCGCCAATATATCGCAAAATGACCGTATTTCCTCAAAATGGTCGAGGCCAAAAAGACGACAGCCATCAGTGATTCCTTTCACCGAGTTCGAGGGTATGAAACCTCCATATTCTAATTTGCTGAAAGAAGCTGGCCCTGACCAGTATTATGATCTATTGGTGCCTGAAGAAATTCTTGAAATGATTGCTGAGCAGACAAATTTGTTCGCAAGTCAAAACATCACAGCCAGGCAAACAAAGCCTGGATCAAGGTCTCATTCATGGAAGCCAACAAACAAGACAGAAATAAAACAGTTTCTTGGGCTGGTCTTGTTTATGGGCGTAGTAAAGCTGCCGAAATTAGCTTATTATTGGCGCAAAGACAAGATACTTGGACAAACTTTTCCAGCCACCGTTATGAGTAGGAACCGCTTCGAGTTACTACTGCAATACCTACACTTTAGCGACAATTTATCTGTCGACAGAAACGATCGTATTGCCAAAATAAGACCTTTAATCGATGCTCTCAATGCTACTTTCCAGAAATATTATTCACCTAAAGAAGATGTTTGTGTGGATGAAAGCCAAGTACCTTTCAGAGGTCGAATAATATTCAGGCAATACAATAAAAGTAAGCGACACAAGTATGGCATGAAGCTATTTAAGTTATGTACTGTTCCCGGATATACTTGCAAACTTAATTTGTATAGTGGGAAAAACATTGACGCAATAAATACTACGCCAACAAATCTGGTGATGGCACTATGTGAAAATATATTTGACAAAGGACACACGCTAGCAACTGATAATTGGTACACTAGCTTGCAACTGGCTTATCGGTTATTGGAGAAGCAAACCCATTTAATTGGCACATTGCGAAAAAACAGAAGAGGATTGCCTAAAGCTGTTGTTGATTCGAAACTGCAAAAAGGTGAAACAATGGCTATGGAGAATGAAGATGGAGTAACAGTGCTTAAATGGAAAGATAAGAGGGACGTGCTTATGCTGTCGACAAAGCATTCCGACAAAATTGCTGTGGTGGTGAAAAAAGGCAAACAGATTCGTAAATCAAAAGTTATTTTGGATTATAATAAATCGAAAGGGTCTGTAGACATGAGTGACCAGATGGGTGCCTATTCTTCGCCATTGCGGAAAACCGTAAAATGGTATAGAAAATTGGCAATAGAACTACTTCTAAATACGGCAGTTGTAAATGCTTGGGTCATGTACAATGAAAATAAGCAGAGCAAATCTTCAATTGTCGACTTTAGGAGGGCTCTCATAAATTATTTGACTCGGCCAGCAGATTCCCAAGAAATAATTATCAATGAAAGACCTAAAAGACTCAAGCATGTTCTAAAATTAAAGGAAGGAAAAGTAAGAGACACGCGTCGTTTTTGCGTGAAATGTTATAAAGATTCAGTACAGGAATTTGGTCGTAAAGTAGCTAAGAATAAAGCTAAGAAATAA

Protein

MCEPLDMDLAMEDFEFTQDEWKQINALEISFSIASINNDALVESDSEPMQLPKKKRRLVIASDSDSDSESAENFVAANISQNDRISSKWSRPKRRQPSVIPFTEFEGMKPPYSNLLKEAGPDQYYDLLVPEEILEMIAEQTNLFASQNITARQTKPGSRSHSWKPTNKTEIKQFLGLVLFMGVVKLPKLAYYWRKDKILGQTFPATVMSRNRFELLLQYLHFSDNLSVDRNDRIAKIRPLIDALNATFQKYYSPKEDVCVDESQVPFRGRIIFRQYNKSKRHKYGMKLFKLCTVPGYTCKLNLYSGKNIDAINTTPTNLVMALCENIFDKGHTLATDNWYTSLQLAYRLLEKQTHLIGTLRKNRRGLPKAVVDSKLQKGETMAMENEDGVTVLKWKDKRDVLMLSTKHSDKIAVVVKKGKQIRKSKVILDYNKSKGSVDMSDQMGAYSSPLRKTVKWYRKLAIELLLNTAVVNAWVMYNENKQSKSSIVDFRRALINYLTRPADSQEIIINERPKRLKHVLKLKEGKVRDTRRFCVKCYKDSVQEFGRKVAKNKAKK

Similarity

Belongs to the universal ribosomal protein uS3 family.

Uniprot

S4P945   A0A023EYQ2   A0A023F0B8   S4NY54   A0A084W7H9   X1WU42   + More
A0A016SIZ8   S4PBM2   J9K6D0   A0A2H8TZ84   A0A2S2QDJ8   J9LK68   X1X046   A0A0D6LDM3   A0A0N4XY30   J9JQ12   J9K106   A0A0P4WIX9   X1XRD4   J9LWR0   A0A1B6HG03   A0A0D6LHL4   A0A0N4WU61   A0A023EYN9   J9JVX5   A0A016U6U0   X1XBY4   A0A016V127   A0A016VEZ7   T1I3L1   A0A016VFC3   A0A016VFZ3   S4P9J6   T0MM39   V5GG67   J9LKV2   A0A0N4WS15   W6NB59   A0A1E1WHA1   A0A183F4M8   A0A3P7UFA4   J9JPM8   A0A2S2QUS6   A0A1B6H7X0   A0A2B4SRV7   A0A0N4UUN0   A0A368GTV8   A8J4K6   A0A1B6E873   A8J4K9   A8J4K3   J9KLM1   A0A016T3Q5   A0A090X8N5   J9LP86   H9J421   A0A0D8XH70   A8J4L3   A0A1B6KKZ3   A8J4M5   A0A2H1V5W0   J9KJ14   X1XG64   A0A1B6J0Q3   A0A0N4WGU5   A0A1B6HI21   A0A1A8PBD7   H9IWM5   A0A1A8PXY9   A0A1B6LFF4   A0A2B4SMS7  

Pubmed

23622113    25474469    24438588    25730766    23829473    17934208    + More
25970599    19121390    26856411   

EMBL

GAIX01005691    JAA86869.1    GBBI01004440    JAC14272.1    GBBI01004438    JAC14274.1    + More
GAIX01013935    JAA78625.1    ATLV01021248    KE525315    KFB46173.1    ABLF02018838    JARK01001552    EYB90668.1    GAIX01004551    JAA88009.1    ABLF02025866    ABLF02025869    ABLF02025877    GFXV01007414    MBW19219.1    GGMS01006604    MBY75807.1    ABLF02011361    ABLF02011864    ABLF02011866    ABLF02042566    KE125214    EPB70205.1    UYSL01019948    VDL71548.1    ABLF02010187    ABLF02050407    ABLF02038619    GDRN01069744    JAI63996.1    ABLF02012265    ABLF02029982    GECU01034165    JAS73541.1    KE125300    EPB69401.1    GBBI01004439    JAC14273.1    ABLF02030622    ABLF02030627    JARK01001390    EYC10641.1    ABLF02016107    JARK01001356    EYC20951.1    JARK01001346    EYC26204.1    ACPB03026393    EYC26339.1    EYC26340.1    GAIX01003729    JAA88831.1    KE647018    EQB62075.1    GALX01005527    JAB62939.1    ABLF02029983    UZAF01018515    VDO52364.1    CAVP010055412    CDL94120.1    GDQN01004768    JAT86286.1    UZAH01001106    VDO19503.1    ABLF02017387    GGMS01012057    MBY81260.1    GECU01037003    GECU01013756    JAS70703.1    JAS93950.1    LSMT01000021    PFX32631.1    UXUI01007140    VDD85673.1    JOJR01000056    RCN47811.1    AB300557    BAF82020.1    GEDC01003168    JAS34130.1    AB300558    BAF82021.1    AB300556    BAF82019.1    ABLF02028028    JARK01001477    EYB97365.1    GBIH01001829    JAC92881.1    ABLF02006169    ABLF02055685    BABH01041064    KN716593    KJH43099.1    AB300559    AB300560    AB300561    AB300562    BAF82022.1    BAF82024.1    GEBQ01027849    JAT12128.1    AB300563    BAF82026.1    ODYU01000651    SOQ35792.1    ABLF02014543    ABLF02028765    ABLF02023363    ABLF02023369    ABLF02055317    GECU01014964    JAS92742.1    UZAF01017203    VDO39079.1    GECU01033435    GECU01003618    JAS74271.1    JAT04089.1    HAEI01002033    SBR78690.1    BABH01021160    BABH01021161    BABH01021162    BABH01021163    HAEH01008939    SBR85849.1    GEBQ01017560    JAT22417.1    LSMT01000060    PFX29817.1   

Proteomes

UP000030765    UP000007819    UP000024635    UP000038043    UP000271162    UP000038042    + More
UP000015103    UP000268014    UP000025227    UP000050761    UP000225706    UP000038041    UP000274131    UP000252519    UP000005204    UP000053766   

PRIDE

H9J421    H9IWM5   

Pfam

PF13843   DDE_Tnp_1_7        + More
PF05699   Dimer_Tnp_hAT
PF02037   SAP
PF00188   CAP
PF05380   Peptidase_A17
PF13842   Tnp_zf-ribbon_2
PF00189   Ribosomal_S3_C
PF07650   KH_2
PF05225   HTH_psq
PF13613   HTH_Tnp_4

Interpro

IPR029526   PGBD        + More
IPR008906   HATC_C_dom       
IPR012337   RNaseH-like_sf       
IPR003034   SAP_dom       
IPR036361   SAP_dom_sf       
IPR014044   CAP_domain       
IPR035940   CAP_sf       
IPR008042   Retrotrans_Pao       
IPR032718   PGBD4_C_Znf-ribbon       
IPR005703   Ribosomal_S3_euk/arc       
IPR036419   Ribosomal_S3_C_sf       
IPR001351   Ribosomal_S3_C       
IPR004044   KH_dom_type_2       
IPR018280   Ribosomal_S3_CS       
IPR015946   KH_dom-like_a/b       
IPR009019   KH_sf_prok-type       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR027805   Transposase_HTH_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF68906   SSF68906       
SSF55797   SSF55797       
SSF54821   SSF54821       
SSF54814   SSF54814       
SSF46689   SSF46689       
SSF57667   SSF57667       

Gene 3D

1.10.720.30     3.40.33.10     3.30.1140.32     3.30.300.20    

ProteinModelPortal

S4P945   A0A023EYQ2   A0A023F0B8   S4NY54   A0A084W7H9   X1WU42   + More
A0A016SIZ8   S4PBM2   J9K6D0   A0A2H8TZ84   A0A2S2QDJ8   J9LK68   X1X046   A0A0D6LDM3   A0A0N4XY30   J9JQ12   J9K106   A0A0P4WIX9   X1XRD4   J9LWR0   A0A1B6HG03   A0A0D6LHL4   A0A0N4WU61   A0A023EYN9   J9JVX5   A0A016U6U0   X1XBY4   A0A016V127   A0A016VEZ7   T1I3L1   A0A016VFC3   A0A016VFZ3   S4P9J6   T0MM39   V5GG67   J9LKV2   A0A0N4WS15   W6NB59   A0A1E1WHA1   A0A183F4M8   A0A3P7UFA4   J9JPM8   A0A2S2QUS6   A0A1B6H7X0   A0A2B4SRV7   A0A0N4UUN0   A0A368GTV8   A8J4K6   A0A1B6E873   A8J4K9   A8J4K3   J9KLM1   A0A016T3Q5   A0A090X8N5   J9LP86   H9J421   A0A0D8XH70   A8J4L3   A0A1B6KKZ3   A8J4M5   A0A2H1V5W0   J9KJ14   X1XG64   A0A1B6J0Q3   A0A0N4WGU5   A0A1B6HI21   A0A1A8PBD7   H9IWM5   A0A1A8PXY9   A0A1B6LFF4   A0A2B4SMS7  

KEGG

105842729    no KO assigned | (RefSeq) piggyBac transposable element-derived protein 3-like

GO

GO:0046983   GO:0016021   GO:0003723   GO:0015935   GO:0003735   GO:0006412   GO:0005634   GO:0003677  

Subcellular location

Nucleus  

Length:

557

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.10625

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.03548

outside

1  -  557

 

 

Pi

195.717857

Theta

196.099461

Tajima's D

-0.275926

CLR

0

CSRT

0.298785060746963

Interpretation

Uncertain