Gene

KWMTBOMO13235  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009974

Annotation

PREDICTED:_2-oxoglutarate_dehydrogenase?_mitochondrial_isoform_X2_[Papilio_xuthus]

Location

Bomo_Chr22(+):10979365-11022651      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.275 Mitochondrial   Reliability : 1.525

CDS

ATGCATCGAGCAAGGATAGTGTTTAACATCTCTAAATCTGGCCAAAGTGAGAGATTTGCATCATGGCTCCTAAACAAACCACAGACTGCCGCGGTTTCAGTAAATGCCAACAGGCTGAAGAGCTCCACCGCGGCGGAACCCTTCCTTAATGGCTCCAGTTCAGCTTACGTCGAGACCATGTACAATGCATGGCTCGCCGACCCAAACTCCGTACACGCGTCTTGGGATGCATTTTTCCGCAATGCGACAAACGGAGCTCAGCCAGGCGCCGCATACACGCCGCCGCCCAATCTCGCGCCATACAACAAGAATGAGGTCCCGCTCACATCGCTCGTGCCATCTAGCGGCGGAATGCCTTCGATTTCAGCAGGTTCCCCTATAAACGAGAAGATAATCGACGATCACCTCGCCGTGCAGGCTATCATCAGGAGTTACCAGGCTCGCGGTCACCTGGCGGCCGATGTGGACCCGCTCGGCATCACGACGGCCACGCTTCCGGAACTGGGCATGCGTGCACCAAGTTCCGAGCTCATCATGAGGAAATATTTCAATTTCGATGAAGCCGACATGGACAGGGTATTCAAACTACCCTCAACTACGTTTATCGGCGAAAAAGAAAAAGCGCTCCCGTTGAGAGAAATTCTGAATCGTTTGGAGCAAGCGTACTGCAACAACATCGGTATTGAGTTCATGTTCATAAATTCCCTGGAACAATGCAACTGGATCCGACAGCGCATGGAGCCACCGAACGTAACAAAGATGAACGCTGACCAGAAGAGGCTCATCCTGGCTCGTCTAACCAGATCAACTGGGTTCGAGAATTTCCTCGCTAAGAAATGGTCCTCCGAGAAGCGTTTCGGTTTGGAAGGGTGCGAAATTTTGATTCCGGCGATGAAGCAAGTCATCGACGTTTCCACGAAACTCGGAGTCGAATCCATCATTATGGGCATGCCCCATAGAGGGCGCCTCAACGTACTCGCGAACGTGTGCCGTAAGCCTCTGCACCAGCTGTTCACACAGTTCGCCGGTCTCGAAGCTGAGGATGATGGTTCCGGCGACGTGAAATATCACTTGGGCACGTACATCGAGCGTTTGAATCGCGTTACCAACAAGAACATTAGATTGGCTGTTTGCGCGAACCCCTCGCACTTGGAGGCCGTCGACCCCGTGGTGCAGGGCAAGACCAGAGCCGAGCAGTTCTACAGGGGAGACAACGAGGGCAAGAAGGTGATGTCGATCCTGCTGCACGGCGACGCGGCGTTCGCTGGTCAGGGCGTCGTGTTCGAGACGATGCACCTGTCGGACCTGCCCGCCTACACCACGCACGGGACCATACACATCGTCGCCAACAACCAGATCGGGTTCACGACCGACCCCAGGCACTCCAGATCTTCCGCCTACTGTACAGACGTGGCCCGCGTTGTTAACGCTCCGATATTCCACGTGAACGGTGACAATCCTGAGGCTGTAATGCACGTTTGTAACGTGGCTGCCGAATGGAGAGCCACGTTCCACAAGGACGTTGTCATTGACATCGTCAGCTACAGGAGAAACGGACACAACGAAGTTGACGAGCCGATGTTCACTCAGCCCCTCATGTACCAGAAGATTCGTAAGACCAAACCAGTATTGGAGAAATACGCGGACCAGTTGATCGCGGAAGGAGTCGTCACAGCTGAGGAGGTTAAAGACGTGAAGGACAAATACGAAAAGATCTGCGAGGACGCGTACAACCAAGCCAAACAGGAGACCCACATCAAATACAAGGACTGGCTCGACTCGCCCTGGTCGGGCTTCTTCGAGGGGAAGGACCCCCTAAAGATGTCGGCCACCGGTGTAGTGGAGGAGACCCTCGTGCACATCGGGCGTCGGTTCTCATCCCCCCCTCCCAACGCCGCGGAGTTCGAGATCCACAAGGGGCTGCTTCGTATCCTGAAGTCGCGCATGGAGATGGTCGACAACCGTACAGTGGACTGGGCGCTCGCGGAGGCGATGGCCTACGGATCTCTGCTCAAGGAGGGCATCCACGTGCGTCTCTCTGGTGAAGATGTTGAGCGAGGCACATTCTCTCACAGACATCACGTGCTCCACCACCAGAAGGTCGACAAGGCCACTTACTGCGCCTTGGCACATCTGTACCCCGACCAGGCTCCCTACACTGTGTGCAACAGCTCACTGTCTGAGTATGGTGTCCTGGGTTTCGAGGTCGGCTACTCCGTAACGAACCCGAACGCCCTGGTGCTGTGGGAGGCCCAGTTCGGAGACTTCAACAACGTGGCCCAGTGCATCATCGACCAGTTCATCTCCAGCGGACAGGCCAAGTGGGTGCGCCAGTCCGGGATTGTACTGCTGCAGCCTCACGGCATGGAGGGGATGGGCCCCGAGCACTCCTCGGCTCGTTTGGAGAGGTTCTTGCAGATGTGCTCCGACGACCCGGACTACATGCCCCCGGAAAGCCCCGACTATGAAGTGCGTCAGCTTCACGACTGCAACTGGATCGTAGCGAACTGTTCGACTCCGGCGTCGTATTTCCACATTCTGCGTCGCCAGATCGCTCTGCCCTTCCGGAAGCCGCTCATCTTGATGACGCCCAAGTCTCTGCTGCGTCATCCCGAATGTAAATCCTCCTTTGACGACATGAAGGAGGGAACCAATTTCAAGAGAGTGATCCCCGAAGAAGGTCCAGCCTCCGAGAACCCTCAGAATGTACGCAAACTCGCATTCTGTTCCGGACGCGTCTACTACGATCTACTCAAACAGAGACGCGACAAGGGACTCGAAAAGGACATTGCTATTGCTAGACTCGAGCAGATCTCTCCGTTCCCGTACGACCAGGTGAAGGCCGAGATCGCGAAGTACCCGAACGCTCAGCTCGTGTGGAGCCAGGAGGAGCACAAGAACATGGGCTCGTGGAGCTACATCGAGCCGCGCTTCCGCACCCTCCTGCAGAACCAGAAGCAGATTAGCTATAACGGTCGCGCCACAGCCGCCTCTCCAGCGACCGGCTCGAAGGCCGCCCACAACAAGGAACTGAGGAACCTTCTCGAAGAGTTCTGCGTGTTATAA

Protein

MHRARIVFNISKSGQSERFASWLLNKPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPELGMRAPSSELIMRKYFNFDEADMDRVFKLPSTTFIGEKEKALPLREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRMEPPNVTKMNADQKRLILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKLGVESIIMGMPHRGRLNVLANVCRKPLHQLFTQFAGLEAEDDGSGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKVMSILLHGDAAFAGQGVVFETMHLSDLPAYTTHGTIHIVANNQIGFTTDPRHSRSSAYCTDVARVVNAPIFHVNGDNPEAVMHVCNVAAEWRATFHKDVVIDIVSYRRNGHNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAEEVKDVKDKYEKICEDAYNQAKQETHIKYKDWLDSPWSGFFEGKDPLKMSATGVVEETLVHIGRRFSSPPPNAAEFEIHKGLLRILKSRMEMVDNRTVDWALAEAMAYGSLLKEGIHVRLSGEDVERGTFSHRHHVLHHQKVDKATYCALAHLYPDQAPYTVCNSSLSEYGVLGFEVGYSVTNPNALVLWEAQFGDFNNVAQCIIDQFISSGQAKWVRQSGIVLLQPHGMEGMGPEHSSARLERFLQMCSDDPDYMPPESPDYEVRQLHDCNWIVANCSTPASYFHILRRQIALPFRKPLILMTPKSLLRHPECKSSFDDMKEGTNFKRVIPEEGPASENPQNVRKLAFCSGRVYYDLLKQRRDKGLEKDIAIARLEQISPFPYDQVKAEIAKYPNAQLVWSQEEHKNMGSWSYIEPRFRTLLQNQKQISYNGRATAASPATGSKAAHNKELRNLLEEFCVL

Uniprot

A0A3S2P5E2   A0A194R604   A0A194PXD5   H9JKC3   A0A1B6F0F5   A0A1Q3FYS8   + More
U5EV19   D6WJK6   A0A2Z5RE50   A0A2J7PU85   A0A1Q3FJR6   A0A2J7PU90   Q7PIB4   A0A1J1IBJ4   A0A139WI65   V9IK01   A0A1B6CUI7   Q175A4   A0A1Q3FYP1   A0A1Q3FJT4   A0A023EWR1   A0A2J7PU95   A0A1B6DCA9   A0A1Q3FYT9   E9J5Z1   A7UU84   A0A2J7PUA7   A0A026WT47   A0A1J1I656   A0A1Q3G4A1   Q175A3   A0A1I9WLI1   E0W368   A0A067QY88   A7UU87   A0A0A9XVG9   A0A195F0U6   A0A1W4W619   A0A195E7Y8   A0A0A9Y5I8   A0A151I1A3   A0A2J7PUA4   A0A1J1I6B4   E2BLJ0   F4X6J5   A0A0P4VSX8   A0A182V589   A0A3F2YRQ7   A0A2M3ZZ09   A0A3L8DGE5   A0A2Y9D3I1   A0A1Q3FJN9   A0A182YLT3   A0A151ILK9   A0A1Q3FJX6   B0WKA6   A0A224XH74   A0A0N0U2S9   A0A182LL89   A0A2M3ZFE5   A7UU86   A0A2A3EBQ8   A0A1B6CMN4   A0A069DY23   A0A232F6E1   A0A0A9Y5I4   A0A0V0G4G3   A0A1Q3FJD8   A0A182FCB1   A0A151XB70   A0A1B6CX51   A0A182PER0   A0A182HI18   A0A0K8TMF4   A0A0A9XXX8   A0A182WCC0   A0A1J1IA19   A0A158NG15   A0A3F2YRR7   A0A182NJA2   A0A182JC46   A0A0A9XM16   A0A1L8E1Z8   V5SK40   A0A2H8TUK5   A0A310S426   A0A0J9RWY6   A0A0A9XVH4   Q8IQQ0   A0A154P1T4   A0A0J9RWV3   A0A2S2R6R8   J9K7C2   A0A0R1DYI5   A0A1Y1LXZ0   A0A1W4VUI9   A0A0Q5U4S4   A0A1L8E250   A0A0Q9XCB5   A0A0J9RWU4  

Pubmed

26354079    19121390    18362917    19820115    26760975    12364791    + More
14747013    17210077    17510324    24945155    21282665    24508170    27538518    20566863    24845553    25401762    26823975    20798317    21719571    27129103    30249741    25244985    20966253    26334808    28648823    26369729    21347285    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17994087    17550304    28004739    18057021   

EMBL

RSAL01000018    RVE52834.1    KQ460883    KPJ11296.1    KQ459586    KPI97987.1    + More
BABH01036740    BABH01036741    BABH01036742    GECZ01026047    GECZ01008678    JAS43722.1    JAS61091.1    GFDL01002349    JAV32696.1    GANO01002076    JAB57795.1    KQ971342    EFA04760.2    FX983739    BAX07238.1    NEVH01021207    PNF19902.1    GFDL01007319    JAV27726.1    PNF19907.1    AAAB01008960    EAA44209.4    CVRI01000043    CRK95809.1    KYB27599.1    JR048976    AEY60821.1    GEDC01020146    JAS17152.1    CH477404    EAT41627.1    GFDL01002350    JAV32695.1    GFDL01007283    JAV27762.1    GAPW01000081    JAC13517.1    PNF19903.1    GEDC01014018    JAS23280.1    GFDL01002347    JAV32698.1    GL768221    EFZ11740.1    EDO63863.1    EDO63865.1    PNF19908.1    KK107109    EZA59108.1    CRK95807.1    GFDL01000431    JAV34614.1    EAT41628.1    KU932365    APA34001.1    DS235882    EEB20073.1    KK853114    KDR11185.1    EDO63864.1    GBHO01018812    GDHC01007131    JAG24792.1    JAQ11498.1    KQ981864    KYN34200.1    KQ979568    KYN20947.1    GBHO01018809    JAG24795.1    KQ976580    KYM79890.1    PNF19904.1    CRK95808.1    GL449033    EFN83427.1    GL888818    EGI57955.1    GDKW01000311    JAI56284.1    APCN01005863    GGFK01000424    MBW33745.1    QOIP01000008    RLU19242.1    GFDL01007204    JAV27841.1    KQ977104    KYN05775.1    GFDL01007259    JAV27786.1    DS231969    EDS29697.1    GFTR01008494    JAW07932.1    KQ435969    KOX67894.1    GGFM01006437    MBW27188.1    EDO63862.1    KZ288310    PBC28616.1    GEDC01022747    JAS14551.1    GBGD01000262    JAC88627.1    NNAY01000902    OXU26009.1    GBHO01018814    JAG24790.1    GECL01003201    JAP02923.1    GFDL01007348    JAV27697.1    KQ982335    KYQ57597.1    GEDC01019222    JAS18076.1    GDAI01002277    JAI15326.1    GBHO01018810    GBRD01008017    JAG24794.1    JAG57804.1    CRK95806.1    ADTU01014885    ADTU01014886    ADTU01014887    GBHO01021827    GBRD01008018    JAG21777.1    JAG57803.1    GFDF01001346    JAV12738.1    KF647632    AHB50494.1    GFXV01005053    MBW16858.1    KQ794714    OAD47021.1    CM002912    KMZ00162.1    GBHO01018807    JAG24797.1    AE014296    BT012466    AAN11721.1    AAO41241.2    AAS93737.1    KQ434786    KZC05090.1    KMZ00158.1    KMZ00169.1    GGMS01015849    MBY85052.1    ABLF02016166    CM000159    KRK02041.1    KRK02042.1    GEZM01046467    GEZM01046465    JAV77220.1    CH954178    KQS44070.1    KQS44072.1    GFDF01001330    JAV12754.1    CH933809    KRG06207.1    KMZ00159.1   

Proteomes

UP000283053    UP000053240    UP000053268    UP000005204    UP000007266    UP000235965    + More
UP000007062    UP000183832    UP000008820    UP000053097    UP000009046    UP000027135    UP000078541    UP000192223    UP000078492    UP000078540    UP000008237    UP000007755    UP000075903    UP000075840    UP000279307    UP000076407    UP000076408    UP000078542    UP000002320    UP000053105    UP000075882    UP000242457    UP000215335    UP000069272    UP000075809    UP000075885    UP000075920    UP000005205    UP000075884    UP000075880    UP000000803    UP000076502    UP000007819    UP000002282    UP000192221    UP000008711    UP000009192   

PRIDE

H9JKC3    Q8IQQ0   

Pfam

PF02779   Transket_pyr        + More
PF00676   E1_dh
PF16078   2-oxogl_dehyd_N
PF16870   OxoGdeHyase_C
PF02099   Josephin

Interpro

IPR011603   2oxoglutarate_DH_E1        + More
IPR032106   2-oxogl_dehyd_N       
IPR029061   THDP-binding       
IPR042179   KGD_C_sf       
IPR031717   KGD_C       
IPR001017   DH_E1       
IPR005475   Transketolase-like_Pyr-bd       
IPR006155   Josephin       

SUPFAM

SSF52518   SSF52518       

Gene 3D

3.40.50.11610    

ProteinModelPortal

A0A3S2P5E2   A0A194R604   A0A194PXD5   H9JKC3   A0A1B6F0F5   A0A1Q3FYS8   + More
U5EV19   D6WJK6   A0A2Z5RE50   A0A2J7PU85   A0A1Q3FJR6   A0A2J7PU90   Q7PIB4   A0A1J1IBJ4   A0A139WI65   V9IK01   A0A1B6CUI7   Q175A4   A0A1Q3FYP1   A0A1Q3FJT4   A0A023EWR1   A0A2J7PU95   A0A1B6DCA9   A0A1Q3FYT9   E9J5Z1   A7UU84   A0A2J7PUA7   A0A026WT47   A0A1J1I656   A0A1Q3G4A1   Q175A3   A0A1I9WLI1   E0W368   A0A067QY88   A7UU87   A0A0A9XVG9   A0A195F0U6   A0A1W4W619   A0A195E7Y8   A0A0A9Y5I8   A0A151I1A3   A0A2J7PUA4   A0A1J1I6B4   E2BLJ0   F4X6J5   A0A0P4VSX8   A0A182V589   A0A3F2YRQ7   A0A2M3ZZ09   A0A3L8DGE5   A0A2Y9D3I1   A0A1Q3FJN9   A0A182YLT3   A0A151ILK9   A0A1Q3FJX6   B0WKA6   A0A224XH74   A0A0N0U2S9   A0A182LL89   A0A2M3ZFE5   A7UU86   A0A2A3EBQ8   A0A1B6CMN4   A0A069DY23   A0A232F6E1   A0A0A9Y5I4   A0A0V0G4G3   A0A1Q3FJD8   A0A182FCB1   A0A151XB70   A0A1B6CX51   A0A182PER0   A0A182HI18   A0A0K8TMF4   A0A0A9XXX8   A0A182WCC0   A0A1J1IA19   A0A158NG15   A0A3F2YRR7   A0A182NJA2   A0A182JC46   A0A0A9XM16   A0A1L8E1Z8   V5SK40   A0A2H8TUK5   A0A310S426   A0A0J9RWY6   A0A0A9XVH4   Q8IQQ0   A0A154P1T4   A0A0J9RWV3   A0A2S2R6R8   J9K7C2   A0A0R1DYI5   A0A1Y1LXZ0   A0A1W4VUI9   A0A0Q5U4S4   A0A1L8E250   A0A0Q9XCB5   A0A0J9RWU4  

PDB

2JGD     E-value=0,     Score=1699

KEGG

101736848    K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] | (RefSeq) 2-oxoglutarate dehydrogenas

PATHWAY

00020    Citrate cycle (TCA cycle) - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)

GO

GO:0030976   GO:0006099   GO:0004591   GO:0005739   GO:0045252   GO:0016579   GO:0004843   GO:0009353   GO:0008152   GO:0016624   GO:0005737   GO:0048869   GO:0003676   GO:0016491   GO:0015930   GO:0055114  

PANTHER

PTHR23152  

Length:

1021

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00373000000000001

Exp number, first 60 AAs:

0.00073

Total prob of N-in:

0.00017

outside

1  -  1021

 

 

Pi

232.50422

Theta

174.211962

Tajima's D

1.20744

CLR

0.01981

CSRT

0.713264336783161

Interpretation

Uncertain