Silkworm Genome Informatics Database

Gene

KWMTBOMO13231

Pre Gene Modal

BGIBMGA009971

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_MARCH8-like_[Bombyx_mori]

Location

Bomo_Chr22(+):10908555-10924929 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 1.906

CDS

ATGCCCGTTCAACAAATAAGTGTGAAGAATTCATCGGAAATTGAAAGTTGGGAATGGGGCGGTGGTTGTGGTAGAGAAACTGTACGGACTGGGTCTGGGAGCAGTCAAACATCATGCAGCAACTGCAGCGGAGATATTTGTCGTATATGCCATTGTGAGAGTGAACCACAGAACCCATTGTTGGCCCCATGTTATTGTTCAGGAAGCCTTAAATACGTACACCAGAGTTGCTTGCAGCAGTGGTTGACGGCATCCGAGACAAGATCTTGTGAGCTATGCAAATTTAACTTCATCATGCACACTAAAATCAAACCGTTCAATGAGTGGCGTTTGCTGGAGATGTCCGGTGTTGAGCGGAGACGTCTGTGCTGCGCGGTTCTTTTCCACTGTGTGGCGGCCCTCTGCGTCATGTGGTCTCTGTTCGTACTTATCGAACGGGCCGTTGAGGAAGTCAATCGCGGTCTTATCGCGTGGCCGTTCTGGACTAAACTGGTCGTGGTGGCGGTCGGGTTCACGGGGGGGGCGGTCTTTATGTACATACAGTGCCGGCAGTATTTGCACCTATGTAATCGTTGGAGAGCTCACAATAGGATACTATTAATACAAAATGCACCGGAGAAGATGGCGGTATGTGGTGGGTCGCCTCCGGTGGTGGCGATGCGGGGGCCGCGGGGCGTGCGGGGTCAGGTGGTTGCCAACATTGAGCCCTCGCCGCCCCCCGCCGCCTTCCACGAGGAGGACGAGAGCGGAGGCTTCGAGACCTACCGCCCCCCGCCGCCCCGCCGCCTTGCGCCCCCCGACGAGCGCATCCCGCCGCGCCGAGCCTCAGACCCGCGCCTCGCCGCGCCCCCAGCCGCGCCACCAGCCCTGCCATCCGTCGCACCACTCGCCATACACGGCGTGTACCATATCGCGGTGGATCCGCTGGAGGCCGACATCAGGTCGCTGCTGGCGCTAGAGGCGCAGCGCCAGACTGCCCGCTCGCTGCCGAACCTGCGCGCCTCTCGAGAGAGTCTCCTGCCGCCTGCCTCCTGA

Protein

MPVQQISVKNSSEIESWEWGGGCGRETVRTGSGSSQTSCSNCSGDICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTASETRSCELCKFNFIMHTKIKPFNEWRLLEMSGVERRRLCCAVLFHCVAALCVMWSLFVLIERAVEEVNRGLIAWPFWTKLVVVAVGFTGGAVFMYIQCRQYLHLCNRWRAHNRILLIQNAPEKMAVCGGSPPVVAMRGPRGVRGQVVANIEPSPPPAAFHEEDESGGFETYRPPPPRRLAPPDERIPPRRASDPRLAAPPAAPPALPSVAPLAIHGVYHIAVDPLEADIRSLLALEAQRQTARSLPNLRASRESLLPPAS

Uniprot

A0A212ER62 A0A2H1V2M6 A0A194Q3J1 A0A194R221 A0A1A9UGE1 A0A0Q9XPX2 + More
A0A1A9YI91 B4L108

Pubmed

22118469 26354079 17994087 18057021

EMBL

AGBW02013113 OWR43965.1 ODYU01000392 SOQ35098.1 KQ459586 KPI97980.1 + More
KQ460883 KPJ11300.1 CH933809 KRG06018.1 KRG06019.1 EDW18165.2

Proteomes

UP000007151 UP000053268 UP000053240 UP000078200 UP000009192 UP000092443 + More

Pfam

PF12906 RINGv

Interpro

IPR013083 Znf_RING/FYVE/PHD + More
IPR011016 Znf_RING-CH

Gene 3D

3.30.40.10

ProteinModelPortal

A0A212ER62 A0A2H1V2M6 A0A194Q3J1 A0A194R221 A0A1A9UGE1 A0A0Q9XPX2 + More
A0A1A9YI91 B4L108

PDB

2D8S E-value=4.28082e-19, Score=232

KEGG

101741807 K10656 E3 ubiquitin-protein ligase MARCH1/8 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase MAR

GO

GO:0008270 GO:0016021 GO:0016874 GO:0005515 GO:0051536 GO:0016491 GO:0016829 GO:0005737 GO:0048869 GO:0003676 GO:0015930

Length:

344

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

44.78494

Exp number, first 60 AAs:

0

Total prob of N-in:

0.97457

inside

1 - 121

TMhelix

122 - 144

outside

145 - 158

TMhelix

159 - 181

inside

182 - 344

Pi

258.579482

Theta

177.62356

Tajima's D

0.344808

CLR

14.809175

CSRT

0.464276786160692

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics