Gene

KWMTBOMO13223

Pre Gene Modal

BGIBMGA009966

Annotation

PREDICTED:_D-2-hydroxyglutarate_dehydrogenase?_mitochondrial_[Papilio_machaon]

Location

Bomo_Chr22(+):10792027-10799669      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.717 Mitochondrial   Reliability : 1.152

CDS

ATGTTGAAATCAGTTGTGTTTTTATTGAGGTGTAATAGTAATAGAATCATTCGCGATCAAGTAAGGTATGCTTCACAAGCACTACCACAACTTTCTTCGGAAAAATACAACGTTAAGAGGAAACAATTTGGAACGGTTCAAGAGTCTGATATAAATTACTTTAAATCGATACTCAGCGAAGAAAGAGTGTTAACTGACGAAAATGATGTTTTGCCATTTAATATCGACTGGATTAAAAATTGCCGAGGGCAGTCAAAAGTTGTTTTAAAACCCAGAAGCACAGAGGAGGTTTCGAAAATTGTCAAGTATTGTAATGACAAACATTTGGCGGTATGTCCGCAAGGCGGGAACACTGGACTGGTGGGAGGCTCAGTGCCGGTCTTCGATGAAGTCGTTCTTTGTCTTGGTCTTCTGAACAAAATAATAAGTTTGGATGAAATATCTGGTGTTCTCATTTGTGAAGCGGGATGCATCCTTGAAAGCTTAGATACATGTGTCCGTGAGCGCAATCTAATAATGCCACTGGACTTAGGGGCAAAAGGTACTTGTCAAATTGGTGGTAATGCCAGCACCAATGCAGGAGGTCTGAGACTTCTCCGATACGGAAACTTACATGGTTCTATACTAGGCATTGAAGCGGTAAAAGCTGATGGCACCGTGATCGATTGTCTCACTACAATGAAGAAAGACAACACAGGATACCATTTAAAACATTTGTTTATCGGATCTGAGGGTACTCTAGGAATCGTCACTAAAGTTTCCATTAATTGCCCGGTTTTACCTAAAGCGGTCACGGTGGGATTCTTCGGGGTTAAAGATTTTCAAAGCGTCCTCAAACTGTACAAAAGCGCAAAACTTTCTTTAGGCGAAATATTGTCAGCATTTGAGATGGCCGATTTCAATGCGATCAATTCATCAGTTACGAATCTCAATTTACCGAACCCCATAGACGAATATCCCTTCTACGTGCTGGTCGAAACTCACGGTAGCGATGAAGGTCACGACGCCGAAAAATTAAATCGATTCCTTGATAAAGAAATGGAAAGTGGACTAATTATCGACGGTACTGTAACATCCGAACCCGCCAAAATGCAGACCATCTGGAACCTTCGAGAGAGTATAGCCGGCTCGAGTCTAACCCGAGGCTACGTTTTTAAATACGACGTGTCTATACCACTCGGAAATTATTATGATTTAGTTCCAATGCTACGAAAGAAACTGGGCAATAAGGCCCTCGATGTATACGGATATGGACATATAGGGGATAGCAATATTCATATAAACATCGTAGTACCGGAATATACGAAAGAAATAGGCTCTCAAATAGAACCTTATGTGTTTGAAGAAGTGAGCAAATTGAACGGGTCGATTAGCGCAGAGCACGGCGTCGGTTTTCGCAAGCCACAGTACATTCATTACAGTAAAAATGAATCTGCCCTTGATCTCATGAGGGAACTGAAGACGCTTATGGACCCGAAGGGAATATTGAACCCATATAAAGTTCTACCTGAGAAATAA

Protein

MLKSVVFLLRCNSNRIIRDQVRYASQALPQLSSEKYNVKRKQFGTVQESDINYFKSILSEERVLTDENDVLPFNIDWIKNCRGQSKVVLKPRSTEEVSKIVKYCNDKHLAVCPQGGNTGLVGGSVPVFDEVVLCLGLLNKIISLDEISGVLICEAGCILESLDTCVRERNLIMPLDLGAKGTCQIGGNASTNAGGLRLLRYGNLHGSILGIEAVKADGTVIDCLTTMKKDNTGYHLKHLFIGSEGTLGIVTKVSINCPVLPKAVTVGFFGVKDFQSVLKLYKSAKLSLGEILSAFEMADFNAINSSVTNLNLPNPIDEYPFYVLVETHGSDEGHDAEKLNRFLDKEMESGLIIDGTVTSEPAKMQTIWNLRESIAGSSLTRGYVFKYDVSIPLGNYYDLVPMLRKKLGNKALDVYGYGHIGDSNIHINIVVPEYTKEIGSQIEPYVFEEVSKLNGSISAEHGVGFRKPQYIHYSKNESALDLMRELKTLMDPKGILNPYKVLPEK

Uniprot

H9JKB5   A0A2A4J6D8   A0A194R231   A0A2H1V529   A0A194PX94   A0A3S2LSC6   + More
A0A212EM57   A0A1Y1L3M7   A0A2J7QG50   A0A2J7QG54   A0A1B6DRW9   A0A1B6CTR9   A0A067QYH9   D6WE94   A0A2M4AHA9   A0A2M4AHF7   A0A182FSC3   A0A1Q3FJQ0   B0W312   W5J8Q1   K7J9X2   A0A232F3B9   A0A182H4A8   Q178E1   A0A1B0GIE0   A0A1L8E0B9   A0A1L8E0H0   A0A182P6Q8   A0A182NLE3   A0A084VNS6   A0A1A9X1G3   A0A182UN40   A0A182QXF0   A0A182W1F7   A0A182MKB9   A0A182I7Q2   A0A182XJ58   A0A182L792   Q7QB44   A0A182ISZ3   A0A182RYR0   A0A1B6H6E0   A0A1B6E3S3   A0A1B6C7D9   A0A1J1HQ30   A0A1B0AEB3   A0A1I8P1Z4   A0A0L7RBM8   A0A1B6H1T9   C3ZLK3   A0A336KFA2   V4BQX2   D3TMR5   A0A1A9UL97   A0A0A1WLC2   E2C5C8   A0A195D861   A0A158NRY9   A0A226EPN0   A0A195BPW6   A0A0L0C422   A0A1A9YNU9   F4WQQ2   A0A1B0APM5   D6WE92   A0A034VBG7   A0A1W4WY92   A0A0K8WEH3   A0A034VTF1   H3A1S5   A0A1I8NGT2   A0A0K8W8C2   A0A1S3IE10   A0A1S3IG95   A0A1B6FGW0   A0A3L8D3F0   A0A1S3IEB0   A0A1S3IF60   A0A026W6H1   A0A210R5A8   A0A0N0BG86   G1K8L8   E4Z4C4   A0A1V4KQU7   A0A0K8RU31   A0A1D2MZC9   H0Z684   F6PH88   A0A1Y1M291   A0A1W2WPB0   A0A3P8PF93   H0Z689   G1Q363   S7MGC0   A0A3B4GCP3   A0A3P9ATN6   F6W0L1   A0A218UBZ6   A0A3Q2V2A8   A0A1U7SFV0  

Pubmed

19121390    26354079    22118469    28004739    24845553    18362917    + More
19820115    20920257    23761445    20075255    28648823    26483478    17510324    24438588    20966253    12364791    14747013    17210077    18563158    23254933    20353571    25830018    20798317    21347285    26108605    21719571    25348373    9215903    25315136    30249741    24508170    28812685    21097902    25727380    27289101    20360741    17495919    21993624    25186727    12481130    15114417   

EMBL

BABH01036767    NWSH01002706    PCG67645.1    KQ460883    KPJ11310.1    ODYU01000696    + More
SOQ35899.1    KQ459586    KPI97971.1    RSAL01000018    RVE52823.1    AGBW02013899    OWR42580.1    GEZM01066100    JAV68184.1    NEVH01014835    PNF27569.1    PNF27570.1    GEDC01008925    JAS28373.1    GEDC01020675    GEDC01007325    JAS16623.1    JAS29973.1    KK853191    KDR10015.1    KQ971326    EEZ99904.2    GGFK01006843    MBW40164.1    GGFK01006856    MBW40177.1    GFDL01007194    JAV27851.1    DS231830    EDS30720.1    ADMH02001952    ETN60341.1    AAZX01018770    NNAY01001148    OXU24980.1    JXUM01109092    KQ565289    KXJ71128.1    CH477365    EAT42562.1    AJWK01013775    GFDF01001904    JAV12180.1    GFDF01001905    JAV12179.1    ATLV01014857    ATLV01014858    KE524991    KFB39620.1    AXCN02000130    AXCM01012580    APCN01002523    APCN01002524    AAAB01008880    EAA08571.4    GECU01037475    JAS70231.1    GEDC01004737    JAS32561.1    GEDC01028138    JAS09160.1    CVRI01000009    CRK88582.1    KQ414617    KOC68161.1    GECZ01018543    GECZ01014147    GECZ01001161    JAS51226.1    JAS55622.1    JAS68608.1    GG666641    EEN46640.1    UFQS01000108    UFQT01000108    SSW99730.1    SSX20110.1    KB202283    ESO91314.1    CCAG010004528    EZ422717    ADD18993.1    GBXI01014625    JAC99666.1    GL452770    EFN76861.1    KQ981153    KYN09061.1    ADTU01024334    LNIX01000002    OXA59575.1    KQ976424    KYM88562.1    JRES01000940    KNC27030.1    GL888275    EGI63415.1    JXJN01001483    EFA01450.2    GAKP01019103    JAC39849.1    GDHF01002870    JAI49444.1    GAKP01013847    JAC45105.1    AFYH01255629    AFYH01255630    GDHF01004928    JAI47386.1    GECZ01020354    JAS49415.1    QOIP01000014    RLU14766.1    KK107405    EZA51226.1    NEDP02000262    OWF56209.1    KQ435793    KOX74198.1    FN657273    CBY42552.1    LSYS01002180    OPJ86783.1    GBKC01001669    JAG44401.1    LJIJ01000375    ODM98174.1    ABQF01030504    GEZM01042829    JAV79561.1    AAPE02004541    AAPE02004542    KE161207    EPQ02370.1    EAAA01000360    MUZQ01000464    OWK51111.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000283053    UP000007151    + More
UP000235965    UP000027135    UP000007266    UP000069272    UP000002320    UP000000673    UP000002358    UP000215335    UP000069940    UP000249989    UP000008820    UP000092461    UP000075885    UP000075884    UP000030765    UP000091820    UP000075903    UP000075886    UP000075920    UP000075883    UP000075840    UP000076407    UP000075882    UP000007062    UP000075880    UP000075900    UP000183832    UP000092445    UP000095300    UP000053825    UP000001554    UP000030746    UP000092444    UP000078200    UP000008237    UP000078492    UP000005205    UP000198287    UP000078540    UP000037069    UP000092443    UP000007755    UP000092460    UP000192223    UP000008672    UP000095301    UP000085678    UP000279307    UP000053097    UP000242188    UP000053105    UP000001646    UP000190648    UP000094527    UP000007754    UP000002280    UP000265100    UP000001074    UP000261460    UP000265160    UP000008144    UP000197619    UP000264840    UP000189705   

PRIDE

H9JKB5   

Pfam

PF01565   FAD_binding_4        + More
PF02913   FAD-oxidase_C

Interpro

IPR006094   Oxid_FAD_bind_N        + More
IPR016166   FAD-bd_PCMH       
IPR016164   FAD-linked_Oxase-like_C       
IPR016171   Vanillyl_alc_oxidase_C-sub2       
IPR004113   FAD-linked_oxidase_C       
IPR036318   FAD-bd_PCMH-like_sf       
IPR016169   FAD-bd_PCMH_sub2       
IPR016167   FAD-bd_PCMH_sub1       

SUPFAM

SSF56176   SSF56176        + More
SSF55103   SSF55103       

Gene 3D

1.10.45.10     3.30.43.10     3.30.465.10    

ProteinModelPortal

H9JKB5   A0A2A4J6D8   A0A194R231   A0A2H1V529   A0A194PX94   A0A3S2LSC6   + More
A0A212EM57   A0A1Y1L3M7   A0A2J7QG50   A0A2J7QG54   A0A1B6DRW9   A0A1B6CTR9   A0A067QYH9   D6WE94   A0A2M4AHA9   A0A2M4AHF7   A0A182FSC3   A0A1Q3FJQ0   B0W312   W5J8Q1   K7J9X2   A0A232F3B9   A0A182H4A8   Q178E1   A0A1B0GIE0   A0A1L8E0B9   A0A1L8E0H0   A0A182P6Q8   A0A182NLE3   A0A084VNS6   A0A1A9X1G3   A0A182UN40   A0A182QXF0   A0A182W1F7   A0A182MKB9   A0A182I7Q2   A0A182XJ58   A0A182L792   Q7QB44   A0A182ISZ3   A0A182RYR0   A0A1B6H6E0   A0A1B6E3S3   A0A1B6C7D9   A0A1J1HQ30   A0A1B0AEB3   A0A1I8P1Z4   A0A0L7RBM8   A0A1B6H1T9   C3ZLK3   A0A336KFA2   V4BQX2   D3TMR5   A0A1A9UL97   A0A0A1WLC2   E2C5C8   A0A195D861   A0A158NRY9   A0A226EPN0   A0A195BPW6   A0A0L0C422   A0A1A9YNU9   F4WQQ2   A0A1B0APM5   D6WE92   A0A034VBG7   A0A1W4WY92   A0A0K8WEH3   A0A034VTF1   H3A1S5   A0A1I8NGT2   A0A0K8W8C2   A0A1S3IE10   A0A1S3IG95   A0A1B6FGW0   A0A3L8D3F0   A0A1S3IEB0   A0A1S3IF60   A0A026W6H1   A0A210R5A8   A0A0N0BG86   G1K8L8   E4Z4C4   A0A1V4KQU7   A0A0K8RU31   A0A1D2MZC9   H0Z684   F6PH88   A0A1Y1M291   A0A1W2WPB0   A0A3P8PF93   H0Z689   G1Q363   S7MGC0   A0A3B4GCP3   A0A3P9ATN6   F6W0L1   A0A218UBZ6   A0A3Q2V2A8   A0A1U7SFV0  

PDB

3PM9     E-value=1.67794e-81,     Score=772

KEGG

101739171    K18204 D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39] | (RefSeq) D-2-hydroxyglutarate dehydrogena

GO

GO:0071949   GO:0016491   GO:0019516   GO:0031234   GO:0005739   GO:0004458   GO:0022904   GO:0051990   GO:0016021   GO:0050660   GO:0003824   GO:0016614   GO:0016829   GO:0005737   GO:0048869   GO:0003676   GO:0015930   GO:0055114  

Length:

505

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00565999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00066

outside

1  -  505

 

 

Pi

236.23898

Theta

175.888312

Tajima's D

1.063229

CLR

0.159813

CSRT

0.678866056697165

Interpretation

Uncertain