SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13219  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009985
Annotation
PREDICTED:_BRCA1-A_complex_subunit_BRE-like_[Amyelois_transitella]
Full name
BRISC and BRCA1-A complex member 2      
Alternative Name
BRCA1-A complex subunit BRE
BRCA1/BRCA2-containing complex subunit 45
Brain and reproductive organ-expressed protein
Location in the cell
Cytoplasmic   Reliability : 1.925
 

Sequence

CDS
ATGGGAACTGAAGCTTTTGGATATTTCAAAAATTTATCTCCAGCATTTCGTCCTTACGTACAAACATTATGTGAAGAATTAAAACTTGGCCTCTGCAAGACTAAAATAGATGTTGAAAGAATATCTTGTTTACCTGATGGAGAGGAATGCCAATTCCGTCTGCTATTACCTTATTGTTCTAAGAAATTGAAATGGGAAATATTATTTGATGTATCAATACCATGGTTTGCTCCGGACTTTAAGTTTGATGATGAAAGTTTTTTGATAAGTGAGGATGAAAACTTTCTTGAAGAGAAAGTCCCAAGTCTTGCTAAATGGAATGAAAGTGATCCTAGAGCTTTGAGTAATGTGATATTTGAGTTGGTCAATCTATACAAAAGTCATCAGATTAGAAAACTGAGTGAGGATGATTCTTCAAGGGCTTATTTTGAATACAGTGCATTACTTGGTGATTCACTCATCTCTGAAAGTAACATCGAAGTTTGGGTTGGAACACATGTCGTTGAATTTTTGATAAAACTTAATGTTGACGTTGGAAGATTATCAGAGCTTTATAGTGATGGCATTGAAGAGAATCCCGGCATTGACACAGCATTGTTACTAGTGAGATATCCAAACTCGACAAACGCAGAACTGATACTATCACCTCTTCTTAATAAAGCCCTGGGGAACATTTCATTACCGCAAATGCATCCATCTACTGTTCTTATGGATTATGTACCTATGGTTACCGAACTGCTGAACAGAAAGATACATGATGTACTTGTCAATGAAAAATTGAAAAGGGATTTATTAGCATTTTTGGTTGTTAAATATGAAGGTGCCATATTGGAACACGATATAAACAGTGCTGCCTTTCTATTTGAAATCAATGACTTCCATTGGATTTTAACAGTAGAATTGGGTCAATTTCCAGAAAAATCTCCAATTTTGACCTTAAGATCAGTTTACCACAGCAGTAAAGGAAAACCAAAATACAAAGTTCTCTCTTCTTGTCCATTAAACAACTTTGAAGAATATGTGGAACAACAAGTAGAATTATTCAAAAACGAATGTAAAGGATCAGTAACTAGTAGTCAACTCGTAAGCTTGGAAAATTAA
Protein
MGTEAFGYFKNLSPAFRPYVQTLCEELKLGLCKTKIDVERISCLPDGEECQFRLLLPYCSKKLKWEILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLYKSHQIRKLSEDDSSRAYFEYSALLGDSLISESNIEVWVGTHVVEFLIKLNVDVGRLSELYSDGIEENPGIDTALLLVRYPNSTNAELILSPLLNKALGNISLPQMHPSTVLMDYVPMVTELLNRKIHDVLVNEKLKRDLLAFLVVKYEGAILEHDINSAAFLFEINDFHWILTVELGQFPEKSPILTLRSVYHSSKGKPKYKVLSSCPLNNFEEYVEQQVELFKNECKGSVTSSQLVSLEN

Summary

Description
Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integrity and modulating the E3 ubiquitin ligase activity of the BRCA1-BARD1 heterodimer. Component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Within the BRISC complex, acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integrity. The BRISC complex is required for normal mitotic spindle assembly and microtubule attachment to kinetochores via its role in deubiquitinating NUMA1. The BRISC complex plays a role in interferon signaling via its role in the deubiquitination of the interferon receptor IFNAR1; deubiquitination increases IFNAR1 activity by enhancing its stability and cell surface expression. Down-regulates the response to bacterial lipopolysaccharide (LPS) via its role in IFNAR1 deubiquitination. May play a role in homeostasis or cellular differentiation in cells of neural, epithelial and germline origins. May also act as a death receptor-associated anti-apoptotic protein, which inhibits the mitochondrial apoptotic pathway. May regulate TNF-alpha signaling through its interactions with TNFRSF1A; however these effects may be indirect.
Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the brca1-bard1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the interaction between babam1/nba1 and the rest of the complex, thereby being required for the complex integrity and modulating the E3 ubiquitin ligase activity of the brca1-bard1 heterodimer. Component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Within the BRISC complex, acts as an adapter that bridges the interaction between babam1/nba1 and the rest of the complex, thereby being required for the complex integrity. The BRISC complex is required for normal mitotic spindle assembly and microtubule attachment to kinetochores via its role in deubiquitinating numa1. The BRISC complex plays a role in interferon signaling via its role in the deubiquitination of the interferon receptor ifnar1; deubiquitination increases ifnar1 activity by enhancing its stability and cell surface expression. Down-regulates the response to bacterial lipopolysaccharide (LPS) via its role in ifnar1 deubiquitination. May play a role in homeostasis or cellular differentiation in cells of neural, epithelial and germline origins. May also act as a death receptor-associated anti-apoptotic protein, which inhibits the mitochondrial apoptotic pathway.
Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX (PubMed:17525341, PubMed:19261746, PubMed:19261749, PubMed:19261748). In the BRCA1-A complex, it acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integrity and modulating the E3 ubiquitin ligase activity of the BRCA1-BARD1 heterodimer (PubMed:21282113, PubMed:19261748). Component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates (PubMed:19214193, PubMed:24075985, PubMed:25283148, PubMed:26195665). Within the BRISC complex, acts as an adapter that bridges the interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integrity (PubMed:21282113). The BRISC complex is required for normal mitotic spindle assembly and microtubule attachment to kinetochores via its role in deubiquitinating NUMA1 (PubMed:26195665). The BRISC complex plays a role in interferon signaling via its role in the deubiquitination of the interferon receptor IFNAR1; deubiquitination increases IFNAR1 activity by enhancing its stability and cell surface expression (PubMed:24075985). Down-regulates the response to bacterial lipopolysaccharide (LPS) via its role in IFNAR1 deubiquitination (PubMed:24075985). May play a role in homeostasis or cellular differentiation in cells of neural, epithelial and germline origins. May also act as a death receptor-associated anti-apoptotic protein, which inhibits the mitochondrial apoptotic pathway. May regulate TNF-alpha signaling through its interactions with TNFRSF1A; however these effects may be indirect (PubMed:15465831).
Subunit
Component of the ARISC complex, at least composed of UIMC1/RAP80, ABRAXAS1, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1. Component of the BRCA1-A complex, at least composed of BRCA1, BARD1, UIMC1/RAP80, ABRAXAS1, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1. In the BRCA1-A complex, interacts directly with ABRAXAS1, BRCC3/BRCC36 and BABAM1/NBA1. Binds polyubiquitin. Component of the BRISC complex, at least composed of ABRAXAS2, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1.
Component of the ARISC complex, at least composed of uimc1/rap80, abraxas1, brcc3/brcc36, babam2 and babam1/nba1. Component of the BRCA1-A complex, at least composed of brca1, bard1, uimc1/rap80, abraxas1, brcc3/brcc36, babam2 and babam1/nba1. In the BRCA1-A complex, interacts directly with abraxas1, brcc3/brcc36 and babam1/nba1. Binds polyubiquitin. Component of the BRISC complex, at least composed of abraxas2, brcc3/brcc36, babam2 and babam1/nba1.
Component of the ARISC complex, at least composed of UIMC1/RAP80, ABRAXAS1, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1. Component of the BRCA1-A complex, at least composed of BRCA1, BARD1, UIMC1/RAP80, ABRAXAS1, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1. In the BRCA1-A complex, interacts directly with ABRAXAS1, BRCC3/BRCC36 and BABAM1/NBA1. Binds polyubiquitin. Component of the BRISC complex, at least composed of ABRAXAS2, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1. Identified in a complex with SHMT2 and the other subunits of the BRISC complex. Component of the BRCA1/BRCA2 containing complex (BRCC), which also contains BRCA1, BRCA2, BARD1, BRCC3/BRCC36 and RAD51. BRCC is a ubiquitin E3 ligase complex that enhances cellular survival following DNA damage. May interact with FAS and TNFRSF1A.
Component of the ARISC complex, at least composed of UIMC1/RAP80, ABRAXAS1, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1 (PubMed:21282113, PubMed:24075985). Component of the BRCA1-A complex, at least composed of BRCA1, BARD1, UIMC1/RAP80, ABRAXAS1, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1. In the BRCA1-A complex, interacts directly with ABRAXAS1, BRCC3/BRCC36 and BABAM1/NBA1. Binds polyubiquitin. Component of the BRISC complex, at least composed of ABRAXAS2, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1 (PubMed:19214193, PubMed:21282113, PubMed:24075985, PubMed:25283148). Identified in a complex with SHMT2 and the other subunits of the BRISC complex (PubMed:24075985). Component of the BRCA1/BRCA2 containing complex (BRCC), which also contains BRCA1, BRCA2, BARD1, BRCC3/BRCC36 and RAD51. BRCC is a ubiquitin E3 ligase complex that enhances cellular survival following DNA damage. May interact with FAS and TNFRSF1A (PubMed:15465831).
Similarity
Belongs to the BABAM2 family.
Keywords
Apoptosis   Cell cycle   Cell division   Chromatin regulator   Complete proteome   Cytoplasm   DNA damage   DNA repair   Mitosis   Nucleus   Reference proteome   Repeat   Ubl conjugation pathway   Acetylation   Phosphoprotein   Alternative splicing  
Feature
chain  BRISC and BRCA1-A complex member 2
splice variant  In isoform 3.
EMBL
GDQN01002227    JAT88827.1    ODYU01002682    SOQ40491.1    JTDY01004644    KOB67916.1    + More
RSAL01000040    RVE50957.1    KQ460883    KPJ11314.1    AGBW02008829    OWR52447.1    KQ459586    KPI97966.1    GAIX01003448    JAA89112.1    FX985788    BBA93675.1    NEVH01011897    PNF31170.1    KK853582    KDR06501.1    NEDP02005114    OWF43366.1    GACK01009918    JAA55116.1    GFPF01006385    MAA17531.1    GACK01006938    JAA58096.1    GEDV01008932    JAP79625.1    GFAA01002213    JAU01222.1    GFAC01002399    JAT96789.1    KB203660    ESO83491.1    GL441149    EFN65095.1    JO841566    AEO33183.1    KK107652    QOIP01000003    EZA48279.1    RLU24605.1    GEFH01002988    JAP65593.1    PYGN01002696    PSN30085.1    KQ981276    KYN43586.1    ABEP02001063    GL888668    EGI58587.1    AMQN01000776    KB295623    ELU12901.1    JH816684    EKC27637.1    ADTU01004416    KQ982821    KYQ50194.1    GEFM01004842    JAP70954.1    AGCU01036885    AGCU01036886    AGCU01036887    AGCU01036888    AGCU01036889    AGCU01036890    AGCU01036891    AGCU01036892    AGCU01036893    AGCU01036894    KK113841    KFM61137.1    AAGJ04016893    KK500912    KFP11536.1    BC075305    KQ414596    KOC70040.1    KL218170    KFP02932.1    KL536765    KFO94676.1    KL471104    KFV18873.1    KL411537    KFR08788.1    KK734339    KFR06465.1    KL216591    KFV70282.1    KL224848    KFW64939.1    KL206405    KFV81989.1    KL226263    KFM10531.1    KK573690    KFW09095.1    GADI01004616    JAA69192.1    KL761277    KFW89023.1    MUZQ01000117    OWK57766.1    ABQF01049147    ABQF01049148    ABQF01049149    ABQF01049150    KZ505646    PKU48825.1    AKCR02000024    PKK26730.1    AJ719374    KL870842    KGL89713.1    KL447916    KFO78657.1    AY454160    GFWV01005428    MAA30158.1    KK719710    KFO65215.1    AGTO01020624    CM004474    OCT79529.1    LMAW01002680    KQK78217.1    AAEX03010805    PNF31169.1    CABD030013680    CABD030013681    CABD030013682    CABD030013683    CABD030013684    CABD030013685    CABD030013686    CABD030013687    CABD030013688    CABD030013689    L38616    AF420605    AY438031    AF015767    AF420602    AF420603    AK000097    AK291086    AC021171    AC093690    AC096552    CH471053    BC001251    AAA64231.1    AAB69387.1    AAH01251.1    AAL17818.1    AAR30499.1    BAA90943.1    ADFV01011340    ADFV01011341    ADFV01011342    ADFV01011343    ADFV01011344    ADFV01011345    ADFV01011346    ADFV01011347    ADFV01011348    ADFV01011349    AJFE02095233    AJFE02095234    AJFE02095235    AJFE02095236    AJFE02095237    AJFE02095238    AJFE02095239    AJFE02095240    AJFE02095241    AJFE02095242    AACZ04002049    GABC01008590    GABF01001101    GABD01010119    GABE01004557    JAA02748.1    JAA21044.1    JAA22981.1    JAA40182.1    CR857384    ABGA01135681    ABGA01135682    ABGA01135683    ABGA01135684    ABGA01135685    ABGA01135686    ABGA01135687    ABGA01135688    ABGA01135689    ABGA01135690    GAMT01005345    GAMS01009383    GAMR01006517    GAMQ01007266    GAMP01002110    JAB06516.1    JAB13753.1    JAB27415.1    JAB34585.1    JAB50645.1    GABC01008592    GABC01008589    GABF01001103    GABD01010121    GABE01004559    JAA02749.1    JAA21042.1    JAA22979.1    JAA40180.1    AF440753    LSYS01007194    OPJ72399.1    GBZA01000078    JAG69690.1    KQ971372    EFA10575.1   
Pfam
PF06113   BRE
Interpro
IPR010358   BRE        + More
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR000608   UBQ-conjugat_E2       
SUPFAM
SSF54495   SSF54495       
PDB
6R8F     E-value=7.72119e-11,     Score=161

Ontologies

Topology

Subcellular location
Cytoplasm   Localizes at sites of DNA damage at double-strand breaks (DSBs).   With evidence from 1 publications.
Nucleus   Localizes at sites of DNA damage at double-strand breaks (DSBs).   With evidence from 1 publications.
Length:
366
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000930000000000002
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00526
outside
1  -  366
 
 

Population Genetic Test Statistics

Pi
250.927422
Theta
168.641013
Tajima's D
1.202973
CLR
0.502026
CSRT
0.709814509274536
Interpretation
Uncertain
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