Gene

KWMTBOMO13192  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000360

Annotation

PREDICTED:_zinc_finger_matrin-type_protein_2-like_[Amyelois_transitella]

Location

Bomo_Chr22(-):9759206-9760416      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.74

CDS

ATGAGTATGCGCCCCGATGACCACCGAAGAAAATGGGACAAAGAGGAATTCGAGAAAATTGCAGCCGAGCGTTTGAAAGCAGAGCTAGAAGAAGAAGAAAAATCCAAGAAGAAAGCCACTCCAGTCAAACGTGAACTTCTCAAACAACGTGAATATAAAGTAGATTTGGACTCGAGACTCGGGAAGAGTGTAGTAATCAATAAGAATACGCCAACGTCCCAATCTGGAGGATATTATTGTAATGTTTGTGACTGTGTTGTTAAAGATTCAATAAATTTCCTTGATCACATCAATGGTAAAAAACATCAGAGGAATCTGGGAATGTCCATGAAAATAGAAAGGAGCAGCTTAGATCAGGTAAAAGCAAGATTTGCACTCAATAAACGAAAGTTGGAAGAGAAAAAGCGTGAATATGAATTAGACACAAGATTAAAGGAAGCCGCTGAAGAAGAAGCTCGTGTGAAAGAGCTACGTAGGGAGAGACGTCGGGACAAGAAACGGAAGTTAATGGAGAATGATGAAATAGATGATACACCAGCACCTTCTGAATTAGCACAAATTATGGGGTTTTCTGGCTTTGGAGGATCTAAAAAATGA

Protein

MSMRPDDHRRKWDKEEFEKIAAERLKAELEEEEKSKKKATPVKRELLKQREYKVDLDSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARFALNKRKLEEKKREYELDTRLKEAAEEEARVKELRRERRRDKKRKLMENDEIDDTPAPSELAQIMGFSGFGGSKK

Uniprot

H9ISY2   A0A212EV93   A0A2A4J136   A0A1E1WQS4   S4PMJ2   A0A194R0L3   + More
A0A0N1PGJ2   A0A194PX97   A0A3S2N9W5   I4DP74   B3M901   B4L9B0   U5EU68   B0WRY4   J3JUJ8   N6T2T8   U4URI9   B4LBQ2   A0A3B0JWS4   A0A1Q3F7Q2   Q29D58   B4H7X8   A0A0M5J124   A0A151WGR9   K7J4D9   F4WNL4   A0A0J7K7Z7   A0A087ZRS0   U4V0K5   A0A1Q3F7R0   B4NLZ2   E2AFL2   A0A195B8D2   A0A158NUP4   A0A1B0DLN2   A0A0L0BQX9   A0A182PJW6   A0A182G8L7   A0A195FW61   A0A182US96   A0A182UJ08   A0A182X8M0   Q5TR27   A0A182I152   B4HU34   Q9VZF0   B3NC10   A0A1B0GJN4   A0A182NH23   W8C3Z7   A0A1W4VVF1   V5I7E6   B4PHT0   B4J1H3   A0A182LLI5   A0A0A1XQM7   A0A182YPX8   A0A2M3ZJI6   A0A2M4AVC7   W5JVU7   A0A026X0D1   A0A182F9Q8   A0A2M4C0L3   D6X2W1   A0A2S2Q7L8   A0A182QIA3   A0A1I8PRE9   A0A0K8U080   A0A034W9J7   A0A182MNU4   A0A0A9WQU5   A0A182WCJ9   B4QQJ0   A0A195EBZ4   A0A2A3EQF7   A0A154PDZ4   A0A310SUA1   A0A182JMK5   A0A182RDF4   E9ITR2   A0A0L7R5S3   A0A0M9A5F5   A0A182K2B5   A0A026WSR3   A0A1I8N930   A0A336MHZ9   A0A151IM76   A0A224XPQ6   A0A069DX36   A0A1W4WM73   A0A1Y1M551   A0A1A9XGS4   A0A1A9UTQ8   A0A1B0AR60   A0A1A9ZG26   A0A1B6FBX6   A0A2J7PFM4   A0A1B0FRD2  

Pubmed

19121390    22118469    23622113    26354079    22651552    17994087    + More
22516182    23537049    18057021    15632085    20075255    21719571    20798317    21347285    26108605    26483478    12364791    14747013    17210077    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    17550304    20966253    25830018    25244985    20920257    23761445    24508170    30249741    18362917    19820115    25348373    25401762    26823975    22936249    21282665    25315136    26334808    28004739   

EMBL

BABH01013015    AGBW02012225    OWR45420.1    NWSH01004448    PCG65093.1    GDQN01001679    + More
JAT89375.1    GAIX01003525    JAA89035.1    KQ460883    KPJ11333.1    KQ458594    KPJ05671.1    KQ459586    KPI97947.1    RSAL01000378    RVE42077.1    AK403455    BAM19714.1    CH902618    EDV38945.1    CH933816    EDW17285.1    GANO01002458    JAB57413.1    DS232062    EDS33594.1    BT126913    AEE61875.1    APGK01054673    KB741251    ENN71868.1    KI207694    ERL95722.1    CH940647    EDW68679.1    KRF83971.1    OUUW01000002    SPP77171.1    GFDL01011463    JAV23582.1    CH379070    EAL30556.1    CH479219    EDW34768.1    CP012525    ALC44011.1    KQ983150    KYQ47030.1    GL888237    EGI64207.1    LBMM01012245    KMQ86331.1    KI210204    ERL96190.1    GFDL01011434    JAV23611.1    CH964278    EDW85360.1    GL439118    EFN67763.1    KQ976565    KYM80502.1    ADTU01002857    ADTU01002858    AJVK01036544    JRES01001494    KNC22490.1    JXUM01008038    KQ560252    KXJ83545.1    KQ981215    KYN44557.1    AAAB01008960    EAL40036.3    APCN01000031    CH480817    EDW50455.1    AE014296    AY061480    BT125921    AAF47873.1    AAL29028.1    ADX35900.1    AGB94105.1    CH954178    EDV50898.1    AJWK01021990    GAMC01009897    GAMC01009895    GAMC01009891    JAB96664.1    GALX01006570    JAB61896.1    CM000159    EDW93389.1    CH916366    EDV95864.1    GBXI01007266    GBXI01001444    JAD07026.1    JAD12848.1    GGFM01007996    MBW28747.1    GGFK01011428    MBW44749.1    ADMH02000262    ETN67200.1    KK107064    QOIP01000008    EZA60854.1    RLU19269.1    GGFJ01009560    MBW58701.1    KQ971372    EFA10635.1    GGMS01004398    MBY73601.1    AXCN02000346    GDHF01032383    JAI19931.1    GAKP01008489    GAKP01008488    GAKP01008487    JAC50463.1    AXCM01012579    GBHO01036389    GBRD01009395    GDHC01004698    JAG07215.1    JAG56429.1    JAQ13931.1    CM000363    CM002912    EDX09196.1    KMY97548.1    KQ979074    KYN22748.1    KZ288202    PBC33502.1    KQ434886    KZC10105.1    KQ759874    OAD62369.1    GL765664    EFZ16035.1    KQ414648    KOC66164.1    KQ435740    KOX76836.1    KK107109    EZA59072.1    UFQS01001251    UFQT01001251    SSX09922.1    SSX29645.1    KQ977063    KYN05987.1    GFTR01003362    JAW13064.1    GBGD01003000    JAC85889.1    GEZM01041772    GEZM01041770    GEZM01041769    GEZM01041768    GEZM01041767    GEZM01041766    GEZM01041765    GEZM01041764    GEZM01041763    GEZM01041762    JAV80178.1    JXJN01002265    GECZ01022047    JAS47722.1    NEVH01025655    PNF15132.1    CCAG010014067   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053240    UP000053268    UP000283053    + More
UP000007801    UP000009192    UP000002320    UP000019118    UP000030742    UP000008792    UP000268350    UP000001819    UP000008744    UP000092553    UP000075809    UP000002358    UP000007755    UP000036403    UP000005203    UP000007798    UP000000311    UP000078540    UP000005205    UP000092462    UP000037069    UP000075885    UP000069940    UP000249989    UP000078541    UP000075903    UP000075902    UP000076407    UP000007062    UP000075840    UP000001292    UP000000803    UP000008711    UP000092461    UP000075884    UP000192221    UP000002282    UP000001070    UP000075882    UP000076408    UP000000673    UP000053097    UP000279307    UP000069272    UP000007266    UP000075886    UP000095300    UP000075883    UP000075920    UP000000304    UP000078492    UP000242457    UP000076502    UP000075880    UP000075900    UP000053825    UP000053105    UP000075881    UP000095301    UP000078542    UP000192223    UP000092443    UP000078200    UP000092460    UP000092445    UP000235965    UP000092444   

PRIDE

H9ISY2    Q9VZF0   

Pfam

PF12171   zf-C2H2_jaz

Interpro

IPR022755   Znf_C2H2_jaz        + More
IPR036236   Znf_C2H2_sf       
IPR040107   Snu23       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR000690   Matrin/U1-C_Znf_C2H2       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9ISY2   A0A212EV93   A0A2A4J136   A0A1E1WQS4   S4PMJ2   A0A194R0L3   + More
A0A0N1PGJ2   A0A194PX97   A0A3S2N9W5   I4DP74   B3M901   B4L9B0   U5EU68   B0WRY4   J3JUJ8   N6T2T8   U4URI9   B4LBQ2   A0A3B0JWS4   A0A1Q3F7Q2   Q29D58   B4H7X8   A0A0M5J124   A0A151WGR9   K7J4D9   F4WNL4   A0A0J7K7Z7   A0A087ZRS0   U4V0K5   A0A1Q3F7R0   B4NLZ2   E2AFL2   A0A195B8D2   A0A158NUP4   A0A1B0DLN2   A0A0L0BQX9   A0A182PJW6   A0A182G8L7   A0A195FW61   A0A182US96   A0A182UJ08   A0A182X8M0   Q5TR27   A0A182I152   B4HU34   Q9VZF0   B3NC10   A0A1B0GJN4   A0A182NH23   W8C3Z7   A0A1W4VVF1   V5I7E6   B4PHT0   B4J1H3   A0A182LLI5   A0A0A1XQM7   A0A182YPX8   A0A2M3ZJI6   A0A2M4AVC7   W5JVU7   A0A026X0D1   A0A182F9Q8   A0A2M4C0L3   D6X2W1   A0A2S2Q7L8   A0A182QIA3   A0A1I8PRE9   A0A0K8U080   A0A034W9J7   A0A182MNU4   A0A0A9WQU5   A0A182WCJ9   B4QQJ0   A0A195EBZ4   A0A2A3EQF7   A0A154PDZ4   A0A310SUA1   A0A182JMK5   A0A182RDF4   E9ITR2   A0A0L7R5S3   A0A0M9A5F5   A0A182K2B5   A0A026WSR3   A0A1I8N930   A0A336MHZ9   A0A151IM76   A0A224XPQ6   A0A069DX36   A0A1W4WM73   A0A1Y1M551   A0A1A9XGS4   A0A1A9UTQ8   A0A1B0AR60   A0A1A9ZG26   A0A1B6FBX6   A0A2J7PFM4   A0A1B0FRD2  

PDB

6AHD     E-value=4.16728e-37,     Score=384

KEGG

101742122    K12848 U4/U6.U5 tri-snRNP component SNU23 | (RefSeq) zinc finger matrin-type protein 2

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0008270   GO:0003676   GO:0005681   GO:0000398   GO:0046872   GO:0046540   GO:0005634   GO:0016887   GO:0005737   GO:0048869   GO:0016491   GO:0015930  

PANTHER

PTHR45986  

Subcellular location

Nucleus  

Length:

198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00037

Exp number, first 60 AAs:

0

Total prob of N-in:

0.29182

outside

1  -  198

 

 

Pi

246.38757

Theta

181.928226

Tajima's D

1.114819

CLR

0.059663

CSRT

0.684315784210789

Interpretation

Uncertain