Gene

KWMTBOMO13185

Pre Gene Modal

BGIBMGA000355

Annotation

PREDICTED:_general_transcription_factor_IIE_subunit_1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr22(+):9647387-9655993      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.319

CDS

ATGACGGAAGAGCGTTACGTGACTGAAGTTCCTAGTAGTTTAAAACAGCTAGCAAGATTAGTCGTCAGAGGCTTCTACACAATAGAGGATGCACTCATTGTTGATATGCTGGTCAGGAATCCATGTATGAAAGAAGATGATATTTGTGAGTTATTGAAATTTGAAAGAAAAATGCTAAGAGCAAGAATTTCGATTCTCAAAAATGACAAATTCATTCAGGTCAGACTGAAAATGGAGACAGGACTAGACGGAAAAGCACAAAAAGTTAATTATTATTTCATAAACTACAAGACTTTCGTAAACGTCGTGAAATATAAATTAGATCTTATGAGGAAGCGGTTAGAAACAGAGGAGCGCGACGCTACAAGCAGAGCCAGTTTCAAGTGTCCAGCTTGTGGGAAGACCTTTACAGATTTAGAAGCAGATCAGTTATACGATATGGCAACACAAGAATTCCAATGCACGTTCTGCAGTGCAGTTGTGGACGAGGACATGTCGGCGCTACCAAAAAAAGACTCCAGATTATTGTTGGCCAAGTTCAATGAGCAGCTGGAAACGCTTTACATATTGTTGCGAGAGGTCGAAGGCATCAAACTGGCTCCAGAGATACTGGAACCAGAACCGGTCGATATTAACACAATACGAGGATTGACGTCAAAGCAGTCTGCATTGCGTCCGGGCGGCGAGCAATGGTCGGGTGAGGCGACGCGCAACCAGGGCATGCTGGTCGAGGAGACACGAGTCGACGTCACCATCGGAGACGACAAGCCCGCGCGGGACGCCGGCGCGCTACGCAAGGAGCGGCCCGTCTGGATGGTCGAGAGCACCATTGCCTCCAACGAACAGAGCGACAGCGCGCACTCGACGGACGCGGCCCTCGAGAAGGCGGCCAGTACTGCTGCGAGCGTCAAGACCGCAGGGAAGGAGAAGAACGACGACATTATGTCCGTCCTGCTCGCACACGAGAAACAACCGAGCGCAGGAAACCCTGTCTCAAACGCTGTTAAGGGTCTCGAAGCAGAGAGCTCGGACTCCAGCGACAACGAATCGAAAGATCCGTACAAACTCAAAGATGAACTTGCAGCTGTCGCTGAAATGGAAAGCGATGATTCGGATTCTGATGATAACGCGCCCTCGGTTATGGTGAACGGTAAGACGGTGCCATTGACCAGTGTCGACGACGACGTTATCGCACAGATGACGCCCACTGAGAAGGAAACGTACATCCAAATATATCAGGAATATTACAGCCACATGTACGATTAG

Protein

MTEERYVTEVPSSLKQLARLVVRGFYTIEDALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKDSRLLLAKFNEQLETLYILLREVEGIKLAPEILEPEPVDINTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTIGDDKPARDAGALRKERPVWMVESTIASNEQSDSAHSTDAALEKAASTAASVKTAGKEKNDDIMSVLLAHEKQPSAGNPVSNAVKGLEAESSDSSDNESKDPYKLKDELAAVAEMESDDSDSDDNAPSVMVNGKTVPLTSVDDDVIAQMTPTEKETYIQIYQEYYSHMYD

Similarity

Belongs to the protein kinase superfamily. Tyr protein kinase family.

Uniprot

H9ISX7   A0A3S2N5F5   S4PX37   A0A194R1E4   A0A194PX63   A0A1E1WTZ6   + More
A0A212EV90   A0A2P8XFX5   A0A067R446   A0A2J7RJG8   A0A195E7X5   A0A0L7RIC2   E2AHX6   A0A0J7L5E1   A0A026WSV4   A0A154PS60   A0A151ILM8   F4X6I2   A0A195F0V6   A0A088AHJ8   A0A2A3EAT4   E2BAG8   A0A0M9A5Y7   A0A232FAQ2   A0A158NG07   K7IUT8   A0A0C9RTJ8   A0A182QFA2   A0A1Q3F3P8   A0A1W4X097   E9J600   A0A182IWW3   A0A182KCC6   N6UBP6   Q16MT1   U4U9V1   A0A182NK98   A0A182YR26   B0XL91   A0A182PQ94   W5JJE3   A0A182FH78   A0A1B6H7P4   A0A182HI07   A0A182ULP3   A0A182TRI2   A0A182LL95   A0A182WTR1   Q5TR07   A0A182WCC9   A0A182MMI2   D6WNN0   A0A084WEK2   B4J2J0   E0VIK4   A0A1B6KQ19   B4N4M3   B3M4A6   T1IC26   Q2LZ72   A0A1W4W7E9   B4LCQ5   A0A1B6E3X9   B4PFM4   B3NGY8   A0A023F9G6   A0A3B0J506   A0A151XB62   A0A1Y1K3V1   A0A0K8TW87   B4HEW9   B4QQ94   A0A1B0CWW6   A0A0M4F183   A0A1L8DH09   A0A2J7RJH0   A0A069DTZ9   O96880   A0A0P4VKM9   B4KUS0   A0A0A1XSZ6   A0A1B6G783   A0A182GXH3   R4FRA4   A0A182RI94   A0A0L0CE92   W8ARR2   A0A0A9Y1I7   A0A1A9URP5   A0A1B0A6Y4   A0A224XPY1   A0A1B0GG71   A0A336M2K2   A0A336LQN2   A0A1A9XB47   A0A1B0B8T4   A0A1I8PU33   A0A1I8MGX1  

Pubmed

19121390    23622113    26354079    22118469    29403074    24845553    + More
20798317    24508170    30249741    21719571    28648823    21347285    20075255    21282665    23537049    17510324    25244985    20920257    23761445    20966253    12364791    14747013    17210077    18362917    19820115    24438588    17994087    20566863    15632085    17550304    25474469    28004739    22936249    26334808    9012800    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    27129103    25830018    26483478    26108605    24495485    25401762    26823975    25315136   

EMBL

BABH01013026    RSAL01000387    RVE42022.1    GAIX01005718    JAA86842.1    KQ460883    + More
KPJ11339.1    KQ459586    KPI97941.1    GDQN01000535    JAT90519.1    AGBW02012225    OWR45412.1    PYGN01002284    PSN30913.1    KK852716    KDR17841.1    NEVH01002992    PNF40978.1    KQ979568    KYN20937.1    KQ414583    KOC70717.1    GL439602    EFN66966.1    LBMM01000666    KMQ97841.1    KK107109    QOIP01000008    EZA59120.1    RLU19849.1    KQ435119    KZC14742.1    KQ977104    KYN05787.1    GL888818    EGI57942.1    KQ981864    KYN34210.1    KZ288310    PBC28584.1    GL446721    EFN87330.1    KQ435727    KOX77907.1    NNAY01000550    OXU27735.1    ADTU01014874    AAZX01002635    GBYB01010846    JAG80613.1    AXCN02000423    GFDL01012865    JAV22180.1    GL768221    EFZ11691.1    APGK01041378    KB740993    ENN76067.1    CH477850    EAT35649.1    KB632256    ERL90714.1    DS234361    EDS33725.1    ADMH02000991    ETN64492.1    GECU01036959    GECU01029636    JAS70747.1    JAS78070.1    APCN01005860    AAAB01008960    EAL40056.3    AXCM01004658    KQ971342    EFA03759.1    ATLV01023220    KE525341    KFB48646.1    CH916366    EDV97075.1    DS235200    EEB13210.1    GEBQ01026429    JAT13548.1    CH964095    EDW79097.1    CH902618    EDV39376.1    ACPB03017886    CH379069    EAL29636.1    CH940647    EDW70947.1    GEDC01004668    GEDC01002118    JAS32630.1    JAS35180.1    CM000159    EDW94173.1    CH954178    EDV51445.1    GBBI01000687    JAC18025.1    OUUW01000002    SPP76777.1    KQ982335    KYQ57587.1    GEZM01099042    JAV53537.1    GDHF01033979    GDHF01031666    JAI18335.1    JAI20648.1    CH480815    EDW41138.1    CM000363    CM002912    EDX10112.1    KMY99038.1    AJWK01032930    AJWK01032931    AJWK01032932    AJWK01032933    CP012525    ALC45050.1    GFDF01008346    JAV05738.1    PNF40976.1    GBGD01001643    JAC87246.1    U72892    AE014296    AY119499    AAD00187.1    AAF50029.1    AAM50153.1    GDKW01000941    JAI55654.1    CH933809    EDW19326.1    GBXI01000126    JAD14166.1    GECZ01011477    JAS58292.1    JXUM01095289    JXUM01095290    KQ564186    KXJ72607.1    GAHY01000014    JAA77496.1    JRES01000502    KNC30570.1    GAMC01015050    JAB91505.1    GBHO01016687    GBRD01008864    GDHC01018239    JAG26917.1    JAG56957.1    JAQ00390.1    GFTR01005916    JAW10510.1    CCAG010023484    UFQT01000448    SSX24442.1    UFQT01000118    SSX20384.1    JXJN01010055   

Proteomes

UP000005204    UP000283053    UP000053240    UP000053268    UP000007151    UP000245037    + More
UP000027135    UP000235965    UP000078492    UP000053825    UP000000311    UP000036403    UP000053097    UP000279307    UP000076502    UP000078542    UP000007755    UP000078541    UP000005203    UP000242457    UP000008237    UP000053105    UP000215335    UP000005205    UP000002358    UP000075886    UP000192223    UP000075880    UP000075881    UP000019118    UP000008820    UP000030742    UP000075884    UP000076408    UP000002320    UP000075885    UP000000673    UP000069272    UP000075840    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075920    UP000075883    UP000007266    UP000030765    UP000001070    UP000009046    UP000007798    UP000007801    UP000015103    UP000001819    UP000192221    UP000008792    UP000002282    UP000008711    UP000268350    UP000075809    UP000001292    UP000000304    UP000092461    UP000092553    UP000000803    UP000009192    UP000069940    UP000249989    UP000075900    UP000037069    UP000078200    UP000092445    UP000092444    UP000092443    UP000092460    UP000095300    UP000095301   

PRIDE

H9ISX7    O96880   

Pfam

PF11521   TFIIE-A_C        + More
PF02002   TFIIE_alpha
PF08271   TF_Zn_Ribbon
PF00051   Kringle
PF01392   Fz
PF07714   Pkinase_Tyr
PF01230   HIT
PF10253   PRCC

Interpro

IPR021600   TFIIE_asu_C        + More
IPR002853   TFIIE_asu       
IPR024550   TFIIEa/SarR/Rpc3_HTH_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR017919   TFIIE/TFIIEa_HTH       
IPR039997   TFE       
IPR013137   Znf_TFIIB       
IPR018056   Kringle_CS       
IPR020067   Frizzled_dom       
IPR017441   Protein_kinase_ATP_BS       
IPR013806   Kringle-like       
IPR000001   Kringle       
IPR011009   Kinase-like_dom_sf       
IPR038178   Kringle_sf       
IPR001245   Ser-Thr/Tyr_kinase_cat_dom       
IPR000719   Prot_kinase_dom       
IPR020635   Tyr_kinase_cat_dom       
IPR036790   Frizzled_dom_sf       
IPR008266   Tyr_kinase_AS       
IPR036265   HIT-like_sf       
IPR011146   HIT-like       
IPR001310   Histidine_triad_HIT       
IPR018800   PRCC       
IPR019808   Histidine_triad_CS       

SUPFAM

SSF56112   SSF56112        + More
SSF57440   SSF57440       
SSF54197   SSF54197       

Gene 3D

3.30.40.10     1.10.2000.10     2.40.20.10     3.30.428.10    

CDD

cd00108  KR

ProteinModelPortal

H9ISX7   A0A3S2N5F5   S4PX37   A0A194R1E4   A0A194PX63   A0A1E1WTZ6   + More
A0A212EV90   A0A2P8XFX5   A0A067R446   A0A2J7RJG8   A0A195E7X5   A0A0L7RIC2   E2AHX6   A0A0J7L5E1   A0A026WSV4   A0A154PS60   A0A151ILM8   F4X6I2   A0A195F0V6   A0A088AHJ8   A0A2A3EAT4   E2BAG8   A0A0M9A5Y7   A0A232FAQ2   A0A158NG07   K7IUT8   A0A0C9RTJ8   A0A182QFA2   A0A1Q3F3P8   A0A1W4X097   E9J600   A0A182IWW3   A0A182KCC6   N6UBP6   Q16MT1   U4U9V1   A0A182NK98   A0A182YR26   B0XL91   A0A182PQ94   W5JJE3   A0A182FH78   A0A1B6H7P4   A0A182HI07   A0A182ULP3   A0A182TRI2   A0A182LL95   A0A182WTR1   Q5TR07   A0A182WCC9   A0A182MMI2   D6WNN0   A0A084WEK2   B4J2J0   E0VIK4   A0A1B6KQ19   B4N4M3   B3M4A6   T1IC26   Q2LZ72   A0A1W4W7E9   B4LCQ5   A0A1B6E3X9   B4PFM4   B3NGY8   A0A023F9G6   A0A3B0J506   A0A151XB62   A0A1Y1K3V1   A0A0K8TW87   B4HEW9   B4QQ94   A0A1B0CWW6   A0A0M4F183   A0A1L8DH09   A0A2J7RJH0   A0A069DTZ9   O96880   A0A0P4VKM9   B4KUS0   A0A0A1XSZ6   A0A1B6G783   A0A182GXH3   R4FRA4   A0A182RI94   A0A0L0CE92   W8ARR2   A0A0A9Y1I7   A0A1A9URP5   A0A1B0A6Y4   A0A224XPY1   A0A1B0GG71   A0A336M2K2   A0A336LQN2   A0A1A9XB47   A0A1B0B8T4   A0A1I8PU33   A0A1I8MGX1  

PDB

6O9L     E-value=4.01363e-83,     Score=785

KEGG

101742954    K03136 transcription initiation factor TFIIE subunit alpha | (RefSeq) general transcription factor I

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0006367   GO:0043565   GO:0016021   GO:0004713   GO:0005524   GO:0003824   GO:0003743   GO:0005673   GO:0000993   GO:0001097   GO:0001113   GO:0045944   GO:0005634   GO:0006468   GO:0016887   GO:0005737   GO:0048869   GO:0003676   GO:0016491   GO:0015930  

PANTHER

PTHR13097  

Length:

421

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0887100000000001

Exp number, first 60 AAs:

0.08525

Total prob of N-in:

0.02270

outside

1  -  421

 

 

Pi

207.675317

Theta

163.008804

Tajima's D

0.737776

CLR

0.145193

CSRT

0.586620668966552

Interpretation

Uncertain