Silkworm Genome Informatics Database

Gene

KWMTBOMO13157

Annotation

cuticular_protein_RR-1_motif_29_precursor_[Bombyx_mori]

Location

Bomo_Chr22(+):9310173-9313357 View in EpiBrowser

Location in the cell

Extracellular Reliability : 3.287

CDS

ATGAAACTGGTACTATTATTGTGTTTGATAGCAGTAGCTGTTGCTGCCCAAATTCCGACCTTCGATTCTAACCAAAACGCTCGTATACTTTACCAAAATTACGAAAATAAATTTGGAAGCTACAAATTTGGTTTCAGACAATCCGATGGTATCAGACATGAGCAGGAAGGATTTCTCAATAACTTCGGTCAAGAAAACGAAAACCTATCCGTGAAAGGTAGTTACTCATGGCTAGGACCTGATGGAGTAACTTATGAGATAGACTATACAGCTGGCGAAGATGGTTTCAAACCAGATATTTCTCAGGGACCCGGTGGTGGCATTCCGCCACAAATCCTGGGTTCTATGGCTGGTTAA

Protein

MKLVLLLCLIAVAVAAQIPTFDSNQNARILYQNYENKFGSYKFGFRQSDGIRHEQEGFLNNFGQENENLSVKGSYSWLGPDGVTYEIDYTAGEDGFKPDISQGPGGGIPPQILGSMAG

Uniprot

C0H6M0 C0H6L8 Q5MGQ3

Pubmed

19280704 19121390 16023793

EMBL

BR000530 FAA00531.1 BABH01013045 BR000528 FAA00529.1 AY829733 + More
AAV91347.1

Proteomes

UP000005204

PRIDE

C0H6L8

Pfam

PF00379 Chitin_bind_4

Interpro

IPR031311 CHIT_BIND_RR_consensus + More
IPR000618 Insect_cuticle

ProteinModelPortal

C0H6M0 C0H6L8 Q5MGQ3

KEGG

100379438 no KO assigned | (RefSeq) CPR29, BmorCPR29; cuticular protein RR-1 motif 29

GO

GO:0042302 GO:0008270 GO:0006260 GO:0003824 GO:0005634 GO:0005737 GO:0048869 GO:0003676 GO:0016491 GO:0015930

SignalP

Position: 1 - 16, Likelihood: 0.999175

Length:

118

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.57578999999999

Exp number, first 60 AAs:

5.57561

Total prob of N-in:

0.29564

outside

1 - 118

Pi

126.563423

Theta

127.906181

Tajima's D

0.442266

CLR

0

CSRT

0.498625068746563

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree