Silkworm Genome Informatics Database

Gene

KWMTBOMO13155

Pre Gene Modal

BGIBMGA000339

Annotation

Flexible_cuticle_protein_12_[Papilio_machaon]

Location

Bomo_Chr22(+):9278813-9284906 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.492 PlasmaMembrane Reliability : 1.88

CDS

ATGTATTGCACGATGAACGTGCCTTTTCTGTTTGTTCTTGTAGTTTGTATTGTCCAAAGCTTAACTGAAGGACAACCCTTAGACGGTGCCCATGGAAATGATATAATTTATAATGAATTCGTAAATGAAAACATCGACAAAGGAGAATACAGCTATCGTTTTAAAACAATAGACGAAACCGAGAAAGACGAGACCGCATATTTCAACGAAGATGGCGATTTGGTTGTCGTTGGATATTATTCATACGTTGATCCAGAAGGGAAAATACATTATGTACCGTATAGAGCTGACAAAACTGGCTTTCATATCGAAAAAATATCCAGCGGATCTTTTAATTTGCCTAACGCAATAGTTGCATCACTCCTCGATTTCGCAGTCTATTTAGATACACGTCAATGTAGAACGGTGACAATTATGGTTAAGAATAGTTGGCTGCTCACCATATTGTCATTTATGGCACTCGTCTTTTTTTTGCAAGCCAGTTCCAATGAAAAACAACTTAAAAGATTCGTGATCAATAATAATGGCTTTGGGACTTATAGTTTCGAATACGAAACATCGGAAGGATCGTTCAGGAAAGAAGAAGGCGGACTCTTGGGTAATTCTGGGGGCTCTCTCGTTGTCCGAGGTGAATACGGATATATAGATCCAAGTGGACACAGACATGCCATTAAATATATCGCCGACGTCAACGGGTTTCAACCGCAGTTTGGCGAAGATCATGTTAGATATAATGACAGAAGAATAATATAG

Protein

MYCTMNVPFLFVLVVCIVQSLTEGQPLDGAHGNDIIYNEFVNENIDKGEYSYRFKTIDETEKDETAYFNEDGDLVVVGYYSYVDPEGKIHYVPYRADKTGFHIEKISSGSFNLPNAIVASLLDFAVYLDTRQCRTVTIMVKNSWLLTILSFMALVFFLQASSNEKQLKRFVINNNGFGTYSFEYETSEGSFRKEEGGLLGNSGGSLVVRGEYGYIDPSGHRHAIKYIADVNGFQPQFGEDHVRYNDRRII

Uniprot

A0A194R287 A0A194Q3C9 A0A182P5L1 A0A1J1IWP8 A0A182WKK5 A0A182KCU6 + More
A0A182YCY1 A0A182WGU5 A0A182NII2 A0A182RHG2 A0A182HRK7 A0A182WKK7 A0A151WY68 A0A182NUJ4 A0A182X759 A0A182PJH7 A0A182YDM7 A0A0L0CR75 A0A182X758 A0A182F693 A0A0M3QVY7 A0A2H1VIV9 T1GUQ0 A0A182FCP3 A0A1J1IV07 W5JPT7 A0A0L7KDA8 A0A182P5L0 A0A182REH8 A0A182NII6

Pubmed

26354079 25244985 26108605 20920257 23761445 26227816 + More

EMBL

KQ460883 KPJ11365.1 KQ459586 KPI97915.1 CVRI01000059 CRL02977.1 + More
APCN01001715 KQ982651 KYQ52842.1 JRES01000128 KNC33929.1 CP012525 ALC43219.1 ODYU01002809 SOQ40763.1 CAQQ02092866 CRL02974.1 ADMH02000458 ETN66397.1 JTDY01010080 KOB61318.1

Proteomes

UP000053240 UP000053268 UP000075885 UP000183832 UP000075920 UP000075881 + More
UP000076408 UP000075884 UP000075900 UP000075840 UP000075809 UP000037069 UP000069272 UP000092553 UP000015102 UP000000673 UP000037510

Pfam

PF00379 Chitin_bind_4

Interpro

IPR000618 Insect_cuticle + More
IPR031311 CHIT_BIND_RR_consensus

ProteinModelPortal

A0A194R287 A0A194Q3C9 A0A182P5L1 A0A1J1IWP8 A0A182WKK5 A0A182KCU6 + More
A0A182YCY1 A0A182WGU5 A0A182NII2 A0A182RHG2 A0A182HRK7 A0A182WKK7 A0A151WY68 A0A182NUJ4 A0A182X759 A0A182PJH7 A0A182YDM7 A0A0L0CR75 A0A182X758 A0A182F693 A0A0M3QVY7 A0A2H1VIV9 T1GUQ0 A0A182FCP3 A0A1J1IV07 W5JPT7 A0A0L7KDA8 A0A182P5L0 A0A182REH8 A0A182NII6

KEGG

101744480 no KO assigned | (RefSeq) larval cuticle protein 16/17

GO

GO:0016021 GO:0042302 GO:0008270 GO:0006260 GO:0003824 GO:0005634 GO:0005737 GO:0048869 GO:0003676 GO:0016491 GO:0015930

SignalP

Position: 1 - 24, Likelihood: 0.998757

Length:

250

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

34.31326

Exp number, first 60 AAs:

7.28181

Total prob of N-in:

0.76577

inside

1 - 137

TMhelix

138 - 160

outside

161 - 250

Pi

196.265203

Theta

188.239068

Tajima's D

0.304485

CLR

1.600246

CSRT

0.459327033648318

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics