Gene

KWMTBOMO13147

Pre Gene Modal

BGIBMGA000334

Annotation

cuticular_protein_RR-1_motif_37_precursor_[Bombyx_mori]

Location

Bomo_Chr22(+):9176613-9188285      View in EpiBrowser

Full name

Endocuticle structural glycoprotein ABD-4       + More
Endocuticle structural glycoprotein SgAbd-4      

Location in the cell

Cytoplasmic   Reliability : 1.347 Extracellular   Reliability : 1.713

CDS

ATGACGATGAAGTCGATCTTCTTGTTTGGTTTGGTGGCAGCAGCGCTCGCAGCTCCTCAGCCTCAAAAATCAGACCAGACAGCGGAAATCATCAAGCAAGATTTTGATCAGCAAGTTGACGGTTCATACCAGTTCAGCTATGAAACAGACAACGGTATAAAAGCGGAGGAAACGGGCTCTCTGAAAAAGGCAAGCGGCCCGGACGCGAGTGACGTGATCATTGCTCAAGGGGCTTTCAGCTATACAGCACCAGATGGCACCGTCATCTCTCTGAACTACGTTGCTGACGACGACGGTGGCTTCAAGCCTGAGGGTGCTCATTTACCAACGCCGCCGCCGATACCGCCAGCAATCCAGAAGGCCTTAGACTTCCTTGCAACCGCGCCTCCTCCACCATCCTCACGGAACTGA

Protein

MTMKSIFLFGLVAAALAAPQPQKSDQTAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGGFKPEGAHLPTPPPIPPAIQKALDFLATAPPPPSSRN

Keywords

Amidation   Cuticle   Direct protein sequencing   Glycoprotein   Pyrrolidone carboxylic acid  

Feature

chain  Endocuticle structural glycoprotein ABD-4

Uniprot

C0H6M9   A0A3S2NA82   A0A212FBD0   A0A194R0Q1   A0A194PYT6   I4DJP2   + More
A0A182JMG3   B4P5B5   B4NN92   Q17G16   A0A182YDM4   B3NS21   W5JB35   A0A182T7W2   T1E7H0   B4HPB0   B4QCV0   Q95RB2   A0A182V2U4   A0A1W4U6S7   A0A3B0JFU0   A0A182Q5V7   B3MCJ3   A0A182NUJ7   Q290D1   B4GCF1   A0A1A9VUT7   A0A182X789   A0A084W213   A0A182U7B6   A0A182KTN2   Q7Q1B2   A0A182HRL0   A0A0M4EVF5   A0A336M3T7   U5ERP1   A0A182PFJ0   A0A023EGF7   A0A1B0G6Q2   A0A1A9Y1V8   A0A1B0AM99   A0A1B0ABQ2   A0A2H1VNS6   A0A1A9X163   A0A182MSH2   W8BMH3   A0A0A1XCC6   A0A222NTA6   B0WRC2   B4KRV6   A0A034W0D7   A0A0K8VUW7   P21799   B4LLT1   A0A182WGU1   A0A023EDL5   B4J718   A0A336MMY9   A0A0L0CCY2   A0A1I8MQ56   A0A1I8PB46   A0A1Q3FRI9   A0A1Q3FRE6   E0VR57   Q7M4F1   A0A182RHF8   A0A2P8Y5M7   A0A1W4XP74   A0A182F696   A0A023EDG7   D6WNK6   A0A1Y1LMF0   A0A1L8E3R2   A0A224XSV9   T1GT21   A0A161MSD9   R4G2W3   A0A1B0GJ94   B0ZYQ2   A0A3Q8HIK7   B4LLT8   N6TWE4   B4KRW3   B4GCE4   D6WNU5   A0A194Q3B6   A0A182IU01   Q290D7   A0A2H1VDC4   Q17G30   A0A1S4N1V2   B4J726   B3MCI5   A0A222NT99   U4UFY9   A0A0T6BD43   A0A2A4J2S0   A0A2A4IU20  

Pubmed

19121390    19280704    22118469    26354079    22651552    17994087    + More
17550304    17510324    25244985    20920257    23761445    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    24438588    20966253    12364791    14747013    17210077    24945155    24495485    25830018    25348373    1997327    26108605    25315136    20566863    9692242    29403074    18362917    19820115    28004739    23537049   

EMBL

BABH01013061    BR000538    FAA00540.1    RSAL01000156    RVE45630.1    AGBW02009345    + More
OWR51052.1    KQ460883    KPJ11373.1    KQ459586    KPI97909.1    AK401510    BAM18132.1    CM000158    EDW90777.1    CH964282    EDW85831.1    CH477267    EAT45454.1    CH954179    EDV56323.1    ADMH02002020    ETN59974.1    GAMD01003062    JAA98528.1    CH480816    EDW47559.1    CM000362    CM002911    EDX06761.1    KMY93188.1    AE013599    AY061515    KX531749    AAF58518.2    AAL29063.1    ANY27559.1    OUUW01000001    SPP74200.1    AXCN02002063    CH902619    EDV36227.1    CM000071    EAL25431.3    CH479181    EDW32428.1    ATLV01019473    KE525272    KFB44257.1    AAAB01008980    EAA14421.4    APCN01001718    CP012524    ALC41595.1    UFQT01000134    SSX20658.1    GANO01002726    JAB57145.1    GAPW01005869    JAC07729.1    CCAG010018758    CCAG010018759    JXJN01000377    ODYU01003544    SOQ42456.1    AXCM01008802    GAMC01011979    JAB94576.1    GBXI01006179    JAD08113.1    KX503038    ASQ42724.1    DS232054    EDS33312.1    CH933808    EDW09397.1    GAKP01011332    JAC47620.1    GDHF01023862    GDHF01009643    JAI28452.1    JAI42671.1    CH940648    EDW61954.1    GAPW01006010    JAC07588.1    CH916367    EDW01006.1    UFQT01001422    SSX30489.1    JRES01000678    KNC29324.1    GFDL01004868    JAV30177.1    GFDL01004845    JAV30200.1    DS235451    EEB15863.1    PYGN01000899    PSN39556.1    GAPW01006130    JAC07468.1    KQ971343    EFA03215.1    GEZM01057662    JAV72177.1    GFDF01000723    JAV13361.1    GFTR01002232    JAW14194.1    CAQQ02175411    CAQQ02175412    GEMB01000891    JAS02249.1    ACPB03023185    GAHY01002236    JAA75274.1    AJWK01019926    AJWK01019927    EU407178    ABZ04123.1    MG601680    AYA50005.1    EDW61961.1    APGK01052420    KB741212    ENN72716.1    EDW09404.1    EDW32421.1    EFA03211.1    KPI97900.1    EAL25425.3    ODYU01001934    SOQ38827.1    EAT45440.1    AAZO01007414    EDW01014.1    EDV36219.1    KX503041    ASQ42727.1    KB632279    ERL91283.1    LJIG01001715    KRT85225.1    NWSH01003794    PCG65814.1    NWSH01007872    PCG62774.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000053268    UP000075880    + More
UP000002282    UP000007798    UP000008820    UP000076408    UP000008711    UP000000673    UP000075901    UP000001292    UP000000304    UP000000803    UP000075903    UP000192221    UP000268350    UP000075886    UP000007801    UP000075884    UP000001819    UP000008744    UP000078200    UP000076407    UP000030765    UP000075902    UP000075882    UP000007062    UP000075840    UP000092553    UP000075885    UP000092444    UP000092443    UP000092460    UP000092445    UP000091820    UP000075883    UP000002320    UP000009192    UP000008792    UP000075920    UP000001070    UP000037069    UP000095301    UP000095300    UP000009046    UP000075900    UP000245037    UP000192223    UP000069272    UP000007266    UP000015102    UP000015103    UP000092461    UP000019118    UP000030742    UP000218220   

PRIDE

C0H6M9    Q95RB2   

Pfam

PF00379   Chitin_bind_4

Interpro

IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

ProteinModelPortal

C0H6M9   A0A3S2NA82   A0A212FBD0   A0A194R0Q1   A0A194PYT6   I4DJP2   + More
A0A182JMG3   B4P5B5   B4NN92   Q17G16   A0A182YDM4   B3NS21   W5JB35   A0A182T7W2   T1E7H0   B4HPB0   B4QCV0   Q95RB2   A0A182V2U4   A0A1W4U6S7   A0A3B0JFU0   A0A182Q5V7   B3MCJ3   A0A182NUJ7   Q290D1   B4GCF1   A0A1A9VUT7   A0A182X789   A0A084W213   A0A182U7B6   A0A182KTN2   Q7Q1B2   A0A182HRL0   A0A0M4EVF5   A0A336M3T7   U5ERP1   A0A182PFJ0   A0A023EGF7   A0A1B0G6Q2   A0A1A9Y1V8   A0A1B0AM99   A0A1B0ABQ2   A0A2H1VNS6   A0A1A9X163   A0A182MSH2   W8BMH3   A0A0A1XCC6   A0A222NTA6   B0WRC2   B4KRV6   A0A034W0D7   A0A0K8VUW7   P21799   B4LLT1   A0A182WGU1   A0A023EDL5   B4J718   A0A336MMY9   A0A0L0CCY2   A0A1I8MQ56   A0A1I8PB46   A0A1Q3FRI9   A0A1Q3FRE6   E0VR57   Q7M4F1   A0A182RHF8   A0A2P8Y5M7   A0A1W4XP74   A0A182F696   A0A023EDG7   D6WNK6   A0A1Y1LMF0   A0A1L8E3R2   A0A224XSV9   T1GT21   A0A161MSD9   R4G2W3   A0A1B0GJ94   B0ZYQ2   A0A3Q8HIK7   B4LLT8   N6TWE4   B4KRW3   B4GCE4   D6WNU5   A0A194Q3B6   A0A182IU01   Q290D7   A0A2H1VDC4   Q17G30   A0A1S4N1V2   B4J726   B3MCI5   A0A222NT99   U4UFY9   A0A0T6BD43   A0A2A4J2S0   A0A2A4IU20  

KEGG

100379430    no KO assigned | (RefSeq) CPR37, BmorCPR37; cuticular protein RR-1 motif 37

GO

GO:0042302   GO:0016021   GO:0040003   GO:0008010   GO:0031012   GO:0008270   GO:0006260   GO:0003824   GO:0005634   GO:0005737   GO:0048869   GO:0003676   GO:0016491   GO:0015930  

SignalP

Position:   1 - 17,         Likelihood:  0.990420

 

 

Length:

136

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18215

Exp number, first 60 AAs:

0.15476

Total prob of N-in:

0.06066

outside

1  -  136

 

 

Pi

249.179627

Theta

187.028011

Tajima's D

1.169285

CLR

0.004331

CSRT

0.697865106744663

Interpretation

Uncertain