SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13138
Pre Gene Modal
BGIBMGA000326
Annotation
cuticular_protein_RR-1_motif_44_precursor_[Bombyx_mori]
Full name
Endocuticle structural glycoprotein SgAbd-2       + More
Endocuticle structural glycoprotein SgAbd-8      
Location in the cell
Extracellular   Reliability : 2.188
 

Sequence

CDS
ATGAAATCTATTGTGTTGGTTTCTATGCTGGTCGCAGTGGCCTTGGCCGCGCCTCAGGGGCCCACCGAGCCTATCCCAATTGTTCGTGACGACAGCCAAATCAACGGCGACGGGTCATACCAGTACGCTTTCGAAACCGGCAACGGTATTAGCGCTGACCAGAAGGGTGAACTGAAGAAGGTTGGCGACGTTGAGGCTCTCGAAGTTCAGGGCGAATTCAAATATCCCGGAGAAAACGGTCAGGACATCTCTCTGACCTACACGGCTGATGAGAATGGCTTCCATCCATCCGGCAGCCACTTGCCAACCAGTCCCCCAATCCCGGAAGCCATCCAGCGCGCTCTCGACTTCATCGCCACCGCCCCTCCTGCCCCTGCAGCCGCTGCCGCACAATAG
Protein
MKSIVLVSMLVAVALAAPQGPTEPIPIVRDDSQINGDGSYQYAFETGNGISADQKGELKKVGDVEALEVQGEFKYPGENGQDISLTYTADENGFHPSGSHLPTSPPIPEAIQRALDFIATAPPAPAAAAAQ

Summary

Keywords
Cuticle   Direct protein sequencing   Glycoprotein   Pyrrolidone carboxylic acid  
Feature
chain  Endocuticle structural glycoprotein SgAbd-2
EMBL
BABH01013076    BR000545    FAA00547.1    KQ459586    KPI97901.1    ODYU01001934    + More
SOQ38826.1    KQ460883    KPJ11381.1    AGBW02011079    OWR47244.1    KPI97902.1    KPJ11380.1    SOQ38825.1    BR000544    FAA00546.1    OWR47245.1    JN082716    AER27814.1    NEVH01006738    PNF36675.1    AXCN02002061    KQ971327    EFA00928.1    NWSH01003986    PCG65593.1    ODYU01013214    SOQ59908.1    AB047488    BR000546    BAB32485.1    FAA00548.1    GALX01000205    JAB68261.1    AXCM01002738    NNAY01000425    OXU28499.1    JN082721    AER27818.1    KPI97900.1    NWSH01003794    PCG65814.1    NWSH01007872    PCG62774.1    SOQ38827.1    LJIG01001715    KRT85225.1    ODYU01006154    SOQ47759.1    AAAB01008980    EAA14443.4    BABH01013051    BABH01013052    BR000533    FAA00535.1    AAZO01007414    KPJ11368.1    DS235882    EEB20215.1    CH477267    EAT45441.1    OWR47243.1    KA644545    AFP59174.1    EFA00924.1    EFA00929.1    EFA00925.1    KPJ11382.1    KQ971343    EFA03208.2    GL762903    EFZ20555.1    PYGN01001152    PSN37138.1    AJVK01059427    RSAL01000374    RVE42117.1    SOQ47758.1    DS232054    EDS33307.1    PNF36608.1    AK401062    BAM17684.1    KPI97914.1    CH940647    EDW68490.2    GL888812    EGI57987.1    JN082719    AER27816.1    KQ980155    KYN17457.1    PYGN01001077    PSN37817.1    KX503041    ASQ42727.1    BR000509    FAA00510.1    BABH01014839    KK855351    PTY22120.1    GAHY01001845    JAA75665.1    KQ414716    KOC62801.1    CVRI01000054    CRK99894.1    GFDF01000889    JAV13195.1    ADTU01018174    KQ976526    KYM81952.1    KZ288251    PBC31051.1    GL448255    EFN85029.1    GFDF01000723    JAV13361.1    EAT45440.1    GECZ01002760    JAS67009.1    KQ982482    KYQ55918.1    PNF36609.1    APCN01001715    KQ976818    KYN08083.1    APGK01052420    KB741212    ENN72716.1   
Pfam
PF00379   Chitin_bind_4
Interpro
IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

Ontologies

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.998699
 
 
Length:
131
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.19718
Exp number, first 60 AAs:
0.19697
Total prob of N-in:
0.08686
outside
1  -  131
 
 

Population Genetic Test Statistics

Pi
375.129352
Theta
243.342009
Tajima's D
1.687667
CLR
0
CSRT
0.823958802059897
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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