SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13137
Pre Gene Modal
BGIBMGA000325
Annotation
cuticular_protein_RR-1_motif_45_precursor_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.103
 

Sequence

CDS
ATGAAGTACATCATTATTGTAGCTACCCTGGTGTCCGTGGGCTTAGCTGATGTAAGCAGCTTCCAGCAGTTTCAACATCAACCGAATTATCTACAACAAGTTCAGCCAATCAATTCATTATATGCAAAACAACAACAACTACAGCCAACCTACCAACAACAAACAGTGCATAATACCGAACCTATTCCCATAGTTAATCAGGAACAGGTCATCAACCCCGATGGATCATATAAGTGGAGTTACGAGACAGGAAACGGAATTTCAGCTGAAGAGCAGGGCTACATAAAAAACCAGGGAATACCTGAACAAGAGGCGCAGACGGCACAGGGCCAATATCAATATACTGCGCCTGACGGTCAAGTTATACACGTCCAATATCTGGCGGATGAAAATGGGTTCCAGCCACAAGGTGCCCACTTGCCAACAGCACCGCCGGTCCCAGCCGAGATACAAAAAGCTCTAGACTTCTTGGCCACGCTACCACCTCCGGCACATGACACTAGAGAATACATCAGACATCCTTGA
Protein
MKYIIIVATLVSVGLADVSSFQQFQHQPNYLQQVQPINSLYAKQQQLQPTYQQQTVHNTEPIPIVNQEQVINPDGSYKWSYETGNGISAEEQGYIKNQGIPEQEAQTAQGQYQYTAPDGQVIHVQYLADENGFQPQGAHLPTAPPVPAEIQKALDFLATLPPPAHDTREYIRHP

Summary

Pfam
PF00379   Chitin_bind_4
Interpro
IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

Ontologies

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.989156
 
 
Length:
174
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.94427
Exp number, first 60 AAs:
0.94427
Total prob of N-in:
0.16524
outside
1  -  174
 
 

Population Genetic Test Statistics

Pi
200.161028
Theta
144.057052
Tajima's D
1.572692
CLR
0.026167
CSRT
0.804159792010399
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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