Silkworm Genome Informatics Database

Gene

KWMTBOMO13133

Pre Gene Modal

BGIBMGA000322

Annotation

PREDICTED:_T-related_protein_[Amyelois_transitella]

Location

Bomo_Chr22(+):8982071-8991662 View in EpiBrowser

Transcription factor

T-box

Location in the cell

Nuclear Reliability : 3.375

CDS

ATGGCTGCATCGCACATTCTAAGCGCGGTGGAGCCGACCGTCGGCGGCGGAGGTTCTCGAAGTGGTCGTGAGCGTGAGGTTTCCGTGGCACTCGACGACAGGGAACTATGGGTTCGCTTTCAGACCCTTACAAATGAGATGATCGTTACTAAAAATGGAAGACGAATGTTTCCCGTCGTAAAAGTAACCGCTAGTGGCCTAGATCCAACAGCAATGTATACTGTTTTACTGGAATTTGTACAAGTTGATTCGCATCGATGGAAATACGTGAACGGCGAATGGGTTCCTGGGGGAAAAGCAGAAGTTCCACCTTCGAACGCGATCTACATCCATCCCGAGAGTCCAAACTTCGGAGCCCATTGGATGAAAGAGCCGATTTCATTCGCTAAAGTCAAACTTACAAACAAAACGAACGGCAACGGACAGATAATGCTGAACAGCCTGCACAAATACGAGCCGCGAGTTCACCTAGTTAAAGTCGGTACCGACCTTCGTCGGATCATGACCTATCCTTTTCCCGAGACACAGTTCATCGCAGTCACAGCGTATCAAAACGAAGAAGTTACGTCGCTGAAAATCAAATATAATCCATTCGCAAAAGCGTTTCTCGACGCCAAGGAGCGACCGGAGGGCTATTATCAACGAGATTTTGTGGGAACCCACTATCCGCAGCAAAGTTCCTCGCCACATCAGTACTCACAATTTGGCGGTTGGTTCGTTACGTCTCAGTCTCTGTATGGGGGCGGCGGCACAGCTTCGCGGAGGCCAGCGCCTTACCCTTCAAGGCCACCTTCCCGACCAAGAACCTTGTCGCCGCCCTCTGCGTACAGTAATTCTGAGCGCACGACCGCTGCGCCGAATGGAAGTAGTAGCTATACGTGGTCGAGTAGTAGCGGATATTGGAGTGCTGCGCAGGGCGGCAGTTCGCCTCAGCCCAGCACCTCGCCGGCTCCGTACCGTACACCGCCTCATGCGTACCCTGCCCCCTTGGAATACGCGTCGGCGCCCCCAACCAGTACCTCAGCCCCGACGTCCGCACCGGCGCCTCTGTACCCCATACAATACGAAGCGCCCCCACAGCATCATTCGCCGTATTATCAACACGCGTATGCTCCCTATGCACATCACGCCATCGAGGATATTTCGTATTGGCCTAACAGTTTAAACACTTATGGTTACCAGCCTTCAGAATATGTGGGTACTGGTGAAGCTGCTTACAGTACCGAAGGCATGCAATTTGGTCCTACTGGCCCCGCATTAGAAGCAGCGGGACATAGTGCCGAAGGCCGAGCCTCCCCATCAGGGCAGGACCATTCCACATCTGATAGAGAATACAAATTTAGCACAGACGAGACCCGTCATTCCCCTTGTGAAGAATCTTCAATACCTCCACGTTCCCCCGCACAGTGA

Protein

MAASHILSAVEPTVGGGGSRSGREREVSVALDDRELWVRFQTLTNEMIVTKNGRRMFPVVKVTASGLDPTAMYTVLLEFVQVDSHRWKYVNGEWVPGGKAEVPPSNAIYIHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQIMLNSLHKYEPRVHLVKVGTDLRRIMTYPFPETQFIAVTAYQNEEVTSLKIKYNPFAKAFLDAKERPEGYYQRDFVGTHYPQQSSSPHQYSQFGGWFVTSQSLYGGGGTASRRPAPYPSRPPSRPRTLSPPSAYSNSERTTAAPNGSSSYTWSSSSGYWSAAQGGSSPQPSTSPAPYRTPPHAYPAPLEYASAPPTSTSAPTSAPAPLYPIQYEAPPQHHSPYYQHAYAPYAHHAIEDISYWPNSLNTYGYQPSEYVGTGEAAYSTEGMQFGPTGPALEAAGHSAEGRASPSGQDHSTSDREYKFSTDETRHSPCEESSIPPRSPAQ

Uniprot

H9ISU5 A0A2A4IWX8 A0A194PX15 A0A194R1I8 A0A2H1V6U5

Pubmed

19121390 26354079

EMBL

BABH01013081 NWSH01005810 PCG63928.1 KQ459586 KPI97896.1 KQ460883 + More
KPJ11384.1 ODYU01000983 SOQ36570.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240

PRIDE

H9ISU5

Pfam

PF00907 T-box

Interpro

IPR002070   TF_Brachyury        + More
IPR008967   p53-like_TF_DNA-bd
IPR001699   TF_T-box
IPR018186   TF_T-box_CS
IPR036960   T-box_sf

SUPFAM

SSF49417 SSF49417

Gene 3D

2.60.40.820

CDD

cd00182 TBOX

ProteinModelPortal

H9ISU5 A0A2A4IWX8 A0A194PX15 A0A194R1I8 A0A2H1V6U5

PDB

1XBR E-value=2.43692e-79, Score=753

KEGG

101738764 K10172 brachyury protein | (RefSeq) T-related protein

GO

GO:0005634 GO:0003677 GO:0003700 GO:0006355 GO:0003824 GO:0005737 GO:0048869 GO:0003676 GO:0016491 GO:0015930

PANTHER

PTHR11267

Subcellular location

Nucleus

Length:

469

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0578300000000001

Exp number, first 60 AAs:

0.00968

Total prob of N-in:

0.00441

outside

1 - 469

Pi

216.080941

Theta

188.97195

Tajima's D

0.800905

CLR

0.118542

CSRT

0.607969601519924

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics