Silkworm Genome Informatics Database

Gene

KWMTBOMO13131

Annotation

PREDICTED:_uncharacterized_protein_LOC105842558_[Bombyx_mori]

Location

Bomo_Chr22(-):8948052-8948480 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.37

CDS

ATGCTCAGGGAGGATTCGGTTAGACGTTCAATGCAACCACCTTACTCTGGTCCTCATAGAGTTATATCTAGAGCCGAGGACGGAAAAACGTGGTCGATTGATGTAAAAGGGAAACAGGTGACGGTCAGTGTCGACAGAATTAAGCCAGCTTTCGTCGAGCATTCTTTAGTAGATCTCGTTCCAGCACCAGCACCGCGGGTTTCTGTGCCTCAACCAGCGCAACCGGATGCTACTAATGTCCCTTCATGTCCACTCGTGCCTTCGGCACCTCTAACTGCTACTCCTACACATACACCTCAATATACCACCCGGTCAGGTCGCAGAGTCCACTTCTCCAAACCTTTCGACCTATGA

Protein

MLREDSVRRSMQPPYSGPHRVISRAEDGKTWSIDVKGKQVTVSVDRIKPAFVEHSLVDLVPAPAPRVSVPQPAQPDATNVPSCPLVPSAPLTATPTHTPQYTTRSGRRVHFSKPFDL

Uniprot

A0A0K8TIY3 A0A0L7KVN2 A0A0A9W527 A0A1B6EJH2 A0A1X7V413 W4YUC1 + More
A0A0L7LPS7 A0A2L2YRB9 A0A154NWK6 A0A2J7QNV1 W4YYU0 A0A1X7TF55 A0A0L7QJ10 A0A0R3QJ15 A0A3P7TEH0 A0A232EF23 C7C1Z9 A0A087TS28 K7JT26 A7XDH3 H9IXN9 C5H614 A0A154P0P1 G7YVL4

Pubmed

26227816 25401762 26561354 28648823 20075255 17761848 + More
19121390 22023798

EMBL

GBRD01000337 JAG65484.1 JTDY01005348 KOB67094.1 GBHO01040685 JAG02919.1 + More
GECZ01031692 JAS38077.1 AAGJ04172791 JTDY01000390 KOB77409.1 IAAA01041607 LAA10577.1 KQ434774 KZC04027.1 NEVH01012562 PNF30270.1 AAGJ04156455 LHQN01021927 KOC58627.1 UZAG01006210 VDO18329.1 NNAY01005137 OXU16960.1 FN356213 CAX83702.1 KK116495 KFM67917.1 EF426679 ABP48077.1 BABH01015766 EU780138 ACI45976.1 KQ434791 KZC05421.1 DF144483 GAA56994.1

Proteomes

UP000037510 UP000007879 UP000007110 UP000076502 UP000235965 UP000053825 + More
UP000050602 UP000215335 UP000054359 UP000002358 UP000005204

PRIDE

H9IXN9

Pfam

PF17917   RT_RNaseH        + More
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00078   RVT_1

Interpro

IPR036397   RNaseH_sf        + More
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR041373   RT_RNaseH
IPR041588   Integrase_H2C2
IPR021109   Peptidase_aspartic_dom_sf
IPR001995   Peptidase_A2_cat
IPR041577   RT_RNaseH_2
IPR001969   Aspartic_peptidase_AS
IPR034132   RP_Saci-like
IPR000477   RT_dom

SUPFAM

SSF53098 SSF53098 + More
SSF50630 SSF50630

Gene 3D

3.30.420.10 2.40.70.10

CDD

cd06094 RP_Saci_like

ProteinModelPortal

A0A0K8TIY3 A0A0L7KVN2 A0A0A9W527 A0A1B6EJH2 A0A1X7V413 W4YUC1 + More
A0A0L7LPS7 A0A2L2YRB9 A0A154NWK6 A0A2J7QNV1 W4YYU0 A0A1X7TF55 A0A0L7QJ10 A0A0R3QJ15 A0A3P7TEH0 A0A232EF23 C7C1Z9 A0A087TS28 K7JT26 A7XDH3 H9IXN9 C5H614 A0A154P0P1 G7YVL4

KEGG

105842558 no KO assigned | (RefSeq) uncharacterized LOC105842558

GO

GO:0015074 GO:0003676 GO:0004190 GO:0016021 GO:0005634

Length:

117

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00019

Exp number, first 60 AAs:

0

Total prob of N-in:

0.38140

outside

1 - 117

Pi

197.100519

Theta

126.771406

Tajima's D

1.639035

CLR

0

CSRT

0.816709164541773

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree