Gene

KWMTBOMO13127

Pre Gene Modal

BGIBMGA000320

Annotation

PREDICTED:_programmed_cell_death_protein_2_[Papilio_polytes]

Location

Bomo_Chr22(+):8885251-8892064      View in EpiBrowser

Full name

Programmed cell death protein 2      

Alternative Name

Zinc finger protein Rp-8

Location in the cell

Nuclear   Reliability : 2.824

CDS

ATGGAGCCCAGAAAAGTGGATATAGGCGTTTTAGAAGAAAAACCTAGTTGGCTTTTACATCCAAGGTTCTTTCCAAGCAAAATTGGCGGAAAACCATCCTGGCTTAATCTGCAGGATCTACCGAAATCTAGTGAGCTTTTGTGTAAAAAATGCCAGGATCCTACAGTTTTCTTGTGTCAAGTTTATGCTCCGTTTGAAGATGTAGAAGATTGCTTTCATAGAACTATATTTATTTTCATTTGTAAAAATGGAAATTGTTGCAGTAAAAACCACACTGATAACTTTATTGTACTACGCTGTCAGCTTCCTAGAACGAATGATTTCTATTCCTATCAACCATATGAAGAAAAAGATGAGGAATTCCCAATGGACAACTGGACAAAATTGTGTGATGTATGTGGTGCTAGAGGACCTGCTCATTGTTCAAGGTGTAAGAAAGTGTACTACTGTAGTAGGAAACATCAAATTATTGACTGGCAAAAGGGCCATAAAGAACAATGTCCGCAACTGCAGTCTGGTGATATTGTGAGTACAAATAACTTCAAAATTACAAAGGCTGGACAGTCAGTACTGTTTAAAGAATGGGAACTGATTGTTGATGAAGAAGATGAGGAAGATCCAAATAACACTGATATAAATCAAGAGATGGAGAAGCTGAACAAAATGATGCAAGAAAAAAAAGTTGGCTCATTGAACAATATTAGCGAAAGTGAATTAGAAGAATACACAAGAACAGTACCTAATGACAAAGTGTTTAATAAATTTAGTAAAAGGGTTGCTAGACACCCAGAACAAGTTCTAAGGTATGACAGAGGAGGTGTACCCTTATGGATTACTAGTAATAATGACAGCTTAGTTCATATACCCAAATGTGAATATTGCAATGGTGAAAGGCAATTTGAATTCCAAATAATGCCACAACTGCTGAATTTCTTAGATGTTGGTGTAGAATTGAACAGCATAGACTGGGGAGTACTAGCTATTTATACTTGCAAAGCTAGTTGTAACAAAGGATCTGCATACATGTTGGAGTATATGATAAAACAAGATTTATCTGATTGA

Protein

MEPRKVDIGVLEEKPSWLLHPRFFPSKIGGKPSWLNLQDLPKSSELLCKKCQDPTVFLCQVYAPFEDVEDCFHRTIFIFICKNGNCCSKNHTDNFIVLRCQLPRTNDFYSYQPYEEKDEEFPMDNWTKLCDVCGARGPAHCSRCKKVYYCSRKHQIIDWQKGHKEQCPQLQSGDIVSTNNFKITKAGQSVLFKEWELIVDEEDEEDPNNTDINQEMEKLNKMMQEKKVGSLNNISESELEEYTRTVPNDKVFNKFSKRVARHPEQVLRYDRGGVPLWITSNNDSLVHIPKCEYCNGERQFEFQIMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYMIKQDLSD

Description

May be a DNA-binding protein with a regulatory function. May play an important role in cell death and/or in regulation of cell proliferation (By similarity).

Keywords

Apoptosis   Complete proteome   DNA-binding   Metal-binding   Nucleus   Reference proteome   Ubl conjugation   Zinc   Zinc-finger  

Feature

chain  Programmed cell death protein 2

Uniprot

H9ISU3   A0A2H1VLM9   A0A194PX42   A0A1E1WAF6   A0A194R1J2   S4NN47   + More
A0A212EV34   A0A0L7LJM6   A0A2J7Q908   A0A0L7RIE1   A0A195ET93   A0A195E5Q8   K7J8T4   A0A195B456   A0A232F343   A0A195CJN0   A0A0M9A6G9   A0A2A3EDM6   A0A088ARK9   F4W489   A0A026VVI9   A0A1B6CI05   A0A348G6C9   A0A182RMI8   A0A154P6H0   A0A336L768   A0A336M3S8   A0A1Q3F0F6   Q16HU1   A0A1Y1MM28   A7RJA7   T1DNT4   A0A182FEI0   A0A2M4BSI1   B0X7J1   A0A2M4BST4   A0A1W4WIH1   A0A182M8V9   A0A182HDF6   W5J8U2   E2C856   A0A182QED0   A0A2M3ZAN6   A0A1D2NAA6   A0A2M3ZAR7   A0A182PHH1   A0A2M4AT30   A0A2M4ASL1   A0A2M4AT13   A0A087TTI2   V3ZRJ0   A0A1L8DJ95   A0A182ILC0   A0A226EQY3   A0A3S1B9M3   Q1MTH6   A0A3R7SVI2   W8BJZ6   A0A182Y149   Q7Q6Z9   A0A182LJA8   Q7SZ55   A0A182VE32   A0A182HWY1   A0A1U7R0C9   A0A034W5C5   A0A131Y6L9   D2A1C0   A0A2Y9KZ62   A0A182K644   A0A182U3Y8   A0A0K8W318   B7QG91   A0A3L7I7X1   F6XH12   A0A2L2Y6Z8   A0A182X505   T1J6L8   Q2YDC9   A0A224Z1S9   A0A1A6GE23   A0A210QEY5   A0A0R4J0N5   A0A3B4DXP4   L7M8J2   A0A131YHP9   P46718   A0A2D0QIL1   A0A2G8LQA3   A0A2K6F073   P47816   A0A2K5QS43   A0A2C9JHM2   H3AAF0   A0A1U7U6G1   W5K7T6   E3TGL4   A0A2U4CPL6   B3NQF8   T1FJ96  

Pubmed

19121390    26354079    23622113    22118469    26227816    20075255    + More
28648823    21719571    24508170    30249741    17510324    28004739    17615350    26483478    20920257    23761445    20798317    27289101    23254933    23594743    24495485    25244985    12364791    14747013    17210077    20966253    25348373    18362917    19820115    29704459    19892987    26561354    28797301    28812685    12040188    19468303    25576852    26830274    7880439    16141072    29023486    15057822    2072913    15562597    9215903    25329095    20634964    17994087   

EMBL

BABH01013092    BABH01013093    ODYU01003232    SOQ41723.1    KQ459586    KPI97892.1    + More
GDQN01007072    JAT83982.1    KQ460883    KPJ11389.1    GAIX01012379    JAA80181.1    AGBW02012251    OWR45352.1    JTDY01000826    KOB75753.1    NEVH01016945    PNF25053.1    KQ414584    KOC70635.1    KQ981979    KYN31453.1    KQ979609    KYN20184.1    KQ976625    KYM79047.1    NNAY01001167    OXU24908.1    KQ977642    KYN00923.1    KQ435726    KOX78220.1    KZ288282    PBC29584.1    GL887491    EGI71085.1    KK107796    QOIP01000013    EZA47660.1    RLU15574.1    GEDC01024192    GEDC01006916    JAS13106.1    JAS30382.1    FX986045    BBF98002.1    KQ434826    KZC07423.1    UFQS01002182    UFQT01002182    SSX13440.1    SSX32871.1    UFQT01000523    SSX24932.1    GFDL01014009    JAV21036.1    CH478141    EAT33823.1    GEZM01027469    JAV86729.1    DS469513    EDO48548.1    GAMD01002590    JAA99000.1    GGFJ01006905    MBW56046.1    DS232452    EDS42003.1    GGFJ01006912    MBW56053.1    AXCM01004530    JXUM01034321    KQ561019    KXJ80014.1    ADMH02002097    ETN59219.1    GL453568    EFN75859.1    AXCN02000375    GGFM01004832    MBW25583.1    LJIJ01000122    ODN02177.1    GGFM01004886    MBW25637.1    GGFK01010437    MBW43758.1    GGFK01010438    MBW43759.1    GGFK01010586    MBW43907.1    KK116674    KFM68421.1    KB202954    ESO86952.1    GFDF01007546    JAV06538.1    LNIX01000002    OXA59006.1    RQTK01000746    RUS75389.1    AL772388    QCYY01001567    ROT77113.1    GAMC01004910    JAC01646.1    AAAB01008960    EAA11866.4    BC054132    AAH54132.1    APCN01001593    GAKP01009974    JAC48978.1    GEFM01002090    JAP73706.1    KQ971338    EFA01552.1    GDHF01006832    JAI45482.1    ABJB010370345    DS929843    EEC17863.1    RAZU01000095    RLQ73681.1    IAAA01008290    IAAA01008291    LAA03080.1    JH431879    BC110283    GFPF01010763    MAA21909.1    LZPO01097184    OBS64483.1    NEDP02003955    OWF47269.1    AC154378    CH466630    EDL20458.1    GACK01005600    JAA59434.1    GEDV01010557    JAP78000.1    U10903    AK045985    MRZV01000012    PIK62439.1    CH474033    M80601    AFYH01046599    AFYH01046600    AFYH01046601    GU589500    ADO29450.1    CH954179    EDV56961.1    AMQM01008628    KB095818    ESO11397.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000037510    UP000235965    + More
UP000053825    UP000078541    UP000078492    UP000002358    UP000078540    UP000215335    UP000078542    UP000053105    UP000242457    UP000005203    UP000007755    UP000053097    UP000279307    UP000075900    UP000076502    UP000008820    UP000001593    UP000069272    UP000002320    UP000192223    UP000075883    UP000069940    UP000249989    UP000000673    UP000008237    UP000075886    UP000094527    UP000075885    UP000054359    UP000030746    UP000075880    UP000198287    UP000271974    UP000000437    UP000283509    UP000076408    UP000007062    UP000075882    UP000075903    UP000075840    UP000189706    UP000007266    UP000248482    UP000075881    UP000075902    UP000001555    UP000273346    UP000002281    UP000076407    UP000009136    UP000092124    UP000242188    UP000000589    UP000261440    UP000221080    UP000230750    UP000233160    UP000002494    UP000233040    UP000076420    UP000008672    UP000189704    UP000018467    UP000245320    UP000008711    UP000015101   

PRIDE

H9ISU3    Q2YDC9    P46718    P47816   

Pfam

PF01753   zf-MYND        + More
PF04194   PDCD2_C

Interpro

IPR007320   PDCD2_C        + More
IPR002893   Znf_MYND       

ProteinModelPortal

H9ISU3   A0A2H1VLM9   A0A194PX42   A0A1E1WAF6   A0A194R1J2   S4NN47   + More
A0A212EV34   A0A0L7LJM6   A0A2J7Q908   A0A0L7RIE1   A0A195ET93   A0A195E5Q8   K7J8T4   A0A195B456   A0A232F343   A0A195CJN0   A0A0M9A6G9   A0A2A3EDM6   A0A088ARK9   F4W489   A0A026VVI9   A0A1B6CI05   A0A348G6C9   A0A182RMI8   A0A154P6H0   A0A336L768   A0A336M3S8   A0A1Q3F0F6   Q16HU1   A0A1Y1MM28   A7RJA7   T1DNT4   A0A182FEI0   A0A2M4BSI1   B0X7J1   A0A2M4BST4   A0A1W4WIH1   A0A182M8V9   A0A182HDF6   W5J8U2   E2C856   A0A182QED0   A0A2M3ZAN6   A0A1D2NAA6   A0A2M3ZAR7   A0A182PHH1   A0A2M4AT30   A0A2M4ASL1   A0A2M4AT13   A0A087TTI2   V3ZRJ0   A0A1L8DJ95   A0A182ILC0   A0A226EQY3   A0A3S1B9M3   Q1MTH6   A0A3R7SVI2   W8BJZ6   A0A182Y149   Q7Q6Z9   A0A182LJA8   Q7SZ55   A0A182VE32   A0A182HWY1   A0A1U7R0C9   A0A034W5C5   A0A131Y6L9   D2A1C0   A0A2Y9KZ62   A0A182K644   A0A182U3Y8   A0A0K8W318   B7QG91   A0A3L7I7X1   F6XH12   A0A2L2Y6Z8   A0A182X505   T1J6L8   Q2YDC9   A0A224Z1S9   A0A1A6GE23   A0A210QEY5   A0A0R4J0N5   A0A3B4DXP4   L7M8J2   A0A131YHP9   P46718   A0A2D0QIL1   A0A2G8LQA3   A0A2K6F073   P47816   A0A2K5QS43   A0A2C9JHM2   H3AAF0   A0A1U7U6G1   W5K7T6   E3TGL4   A0A2U4CPL6   B3NQF8   T1FJ96  

PDB

2D8Q     E-value=0.0197184,     Score=88

KEGG

101745585    K14801 pre-rRNA-processing protein TSR4 | (RefSeq) programmed cell death protein 2

GO

GO:0046872   GO:0005737   GO:0030218   GO:0007088   GO:0060218   GO:1901532   GO:0006919   GO:0019899   GO:1902035   GO:0006915   GO:0005634   GO:0003677   GO:0012501   GO:0043065   GO:0048103   GO:2000765   GO:0035162   GO:0043024   GO:0042274   GO:0048477   GO:0008283   GO:0017150   GO:0050660   GO:0003824   GO:0048869   GO:0003676   GO:0016491   GO:0015930  

Subcellular location

Nucleus  

Length:

353

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0304

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01469

outside

1  -  353

 

 

Pi

224.979058

Theta

177.935143

Tajima's D

0.970519

CLR

0.004436

CSRT

0.656817159142043

Interpretation

Uncertain