Gene

KWMTBOMO13123

Pre Gene Modal

BGIBMGA000377

Annotation

hypothetical_protein_KGM_16662_[Danaus_plexippus]

Location

Bomo_Chr22(-):8768749-8773475      View in EpiBrowser

Full name

Protein lin-28 homolog      

Transcription factor

CSD

Location in the cell

Nuclear   Reliability : 3.427

CDS

ATGAAACTTAATATGTTTAAATTACATTCAGGTGTCGAGGGCGCAAGCGGCAGCGGCAGCGGCGTGACAGGGGTGAAGCGGCGCGGGCGATGCAAGTGGTTCAACGTGGCGAAGGGATGGGGGTTCATTACCCCCGATGACGGCGGCCAAGATGTTTTCGTTCACCAGAGTGTGCTACAAATGCCAGGGTTCAGGTCTCTTGGTGATGAGGAAGTAGAGTTTGAGTGCAAGGAGTCAGATAAGGGCCTGGAAGCGACACGTGTTACAGGTCCCAATGGAACCGATTGTCATGGTTCCGATCGACGACCCTTGTCTAAGATCAGATTCAGGAAGATACGTTGCTACAACTGTGGGGAGTTCGCTAATCACATAGCGGCAAAGTGTAGCATTGGGCCACAACCAAAGAGATGTCACAACTGCAAAAGCGAAGACCACCTCGTTGCTGACTGCCCGATAAAGGTCGAAAAGAAAAAGGATGAACAACAAATGGCTCCGGGCAGCTCCCAAGGAGGAAGCTCACAACAACAAGCGTAA

Protein

MKLNMFKLHSGVEGASGSGSGVTGVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKKKDEQQMAPGSSQGGSSQQQA

Similarity

Belongs to the lin-28 family.

Keywords

Complete proteome   Cytoplasm   Metal-binding   Reference proteome   Repeat   Zinc   Zinc-finger  

Feature

chain  Protein lin-28 homolog

Uniprot

H9ISZ8   A0A212EV37   A0A2H1UZW7   A0A0T6BH99   D6WJ86   A0A2P8XTY7   + More
A0A194R1J8   A0A3S2KZH5   A0A194PXY7   T1JDB5   T1I7Y1   A0A0N7Z9Q0   A0A1B0CV62   T1KM74   K1Q061   A0A1I8MEC8   A0A210QTB8   A0A0L0BTU7   A0A182KGA3   A0A182Y2L5   A0A182FEX1   A0A336K3K3   A0A182MRC5   A0A0Q9XEQ4   A0A0Q9WUJ8   A0A084WMR9   A0A182WBS3   A0A182QNL6   A0A182NIB4   A0A182R8U5   A0A1D2NM73   A0A182JLK4   B0WZK9   A0A0N8ES87   A0A1I8PJ06   Q17DB8   A0A226E215   V3ZTE7   A0A1S3H0S6   A0A1S3H391   A0A1S3H0Y7   A0A034VUL3   A0A0K8V591   A0A0K8W453   R7TPA2   W5JSW1   A0A0P4WYW5   A0A0P5DMH9   A0A0P5EU40   E9GLE5   Q9VRN5   A0A0J9RPV3   A0A1A9W4U5   A0A0P5KSS6   A0A1B0FDU7   A0A1A9Z964   A0A2S2PM89   A0A1A9XSE9   A0A2S2NN77   A0A0P5FUQ7   A0A3B3CG14   A0A3B3DRU1   A0A3B3DSF4   A0A3P9LDG3   A0A3B3IE93   A0A3P9H8U1  

Pubmed

19121390    22118469    18362917    19820115    29403074    26354079    + More
22992520    25315136    28812685    26108605    25244985    17994087    24438588    27289101    26999592    17510324    23254933    25348373    20920257    23761445    21292972    12798299    10731132    12537572    22936249    29451363    17554307   

EMBL

BABH01013109    AGBW02012251    OWR45346.1    ODYU01000037    SOQ34131.1    LJIG01000299    + More
KRT86641.1    KQ971343    EFA04440.2    PYGN01001353    PSN35472.1    KQ460883    KPJ11394.1    RSAL01000365    RVE42179.1    KQ459586    KPI97888.1    JH432102    ACPB03018176    GDRN01136331    JAI56664.1    AJWK01030137    CAEY01000239    JH818227    EKC24739.1    NEDP02002011    OWF51984.1    JRES01001347    KNC23505.1    UFQS01000040    UFQT01000040    SSW98138.1    SSX18524.1    AXCM01010638    CH933809    KRG06137.1    CH940647    KRF84542.1    ATLV01024504    KE525352    KFB51513.1    AXCN02000879    LJIJ01000007    ODN06337.1    DS232209    EDS37523.1    GDUN01000154    JAN95765.1    CH477297    EAT44372.1    LNIX01000009    OXA50516.1    KB203566    ESO84181.1    GAKP01013180    JAC45772.1    GDHF01032750    GDHF01028964    GDHF01018220    GDHF01016360    GDHF01015680    JAI19564.1    JAI23350.1    JAI34094.1    JAI35954.1    JAI36634.1    GDHF01007118    GDHF01006443    JAI45196.1    JAI45871.1    AMQN01002400    KB309137    ELT95392.1    ADMH02000462    ETN66383.1    GDIP01250544    JAI72857.1    GDIP01155206    JAJ68196.1    GDIP01155205    JAJ68197.1    GL732551    EFX79498.1    AF521096    AE014296    AY118360    CM002912    KMY97772.1    GDIQ01185332    JAK66393.1    CCAG010018873    GGMR01017904    MBY30523.1    GGMR01006031    MBY18650.1    GDIQ01251556    JAK00169.1   

Proteomes

UP000005204    UP000007151    UP000007266    UP000245037    UP000053240    UP000283053    + More
UP000053268    UP000015103    UP000092461    UP000015104    UP000005408    UP000095301    UP000242188    UP000037069    UP000075881    UP000076408    UP000069272    UP000075883    UP000009192    UP000008792    UP000030765    UP000075920    UP000075886    UP000075884    UP000075900    UP000094527    UP000075880    UP000002320    UP000095300    UP000008820    UP000198287    UP000030746    UP000085678    UP000014760    UP000000673    UP000000305    UP000000803    UP000091820    UP000092444    UP000092445    UP000092443    UP000261560    UP000265180    UP000001038    UP000265200   

PRIDE

H9ISZ8    Q9VRN5   

Pfam

PF00098   zf-CCHC        + More
PF00313   CSD

Interpro

IPR002059   CSP_DNA-bd        + More
IPR011129   CSD       
IPR012340   NA-bd_OB-fold       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR019844   CSD_1       

SUPFAM

SSF50249   SSF50249        + More
SSF57756   SSF57756       

CDD

cd04458  CSP_CDS

ProteinModelPortal

H9ISZ8   A0A212EV37   A0A2H1UZW7   A0A0T6BH99   D6WJ86   A0A2P8XTY7   + More
A0A194R1J8   A0A3S2KZH5   A0A194PXY7   T1JDB5   T1I7Y1   A0A0N7Z9Q0   A0A1B0CV62   T1KM74   K1Q061   A0A1I8MEC8   A0A210QTB8   A0A0L0BTU7   A0A182KGA3   A0A182Y2L5   A0A182FEX1   A0A336K3K3   A0A182MRC5   A0A0Q9XEQ4   A0A0Q9WUJ8   A0A084WMR9   A0A182WBS3   A0A182QNL6   A0A182NIB4   A0A182R8U5   A0A1D2NM73   A0A182JLK4   B0WZK9   A0A0N8ES87   A0A1I8PJ06   Q17DB8   A0A226E215   V3ZTE7   A0A1S3H0S6   A0A1S3H391   A0A1S3H0Y7   A0A034VUL3   A0A0K8V591   A0A0K8W453   R7TPA2   W5JSW1   A0A0P4WYW5   A0A0P5DMH9   A0A0P5EU40   E9GLE5   Q9VRN5   A0A0J9RPV3   A0A1A9W4U5   A0A0P5KSS6   A0A1B0FDU7   A0A1A9Z964   A0A2S2PM89   A0A1A9XSE9   A0A2S2NN77   A0A0P5FUQ7   A0A3B3CG14   A0A3B3DRU1   A0A3B3DSF4   A0A3P9LDG3   A0A3B3IE93   A0A3P9H8U1  

PDB

3TS2     E-value=3.44465e-28,     Score=306

KEGG

101746159    K18754 protein lin-28 | (RefSeq) protein lin-28 homolog

GO

GO:0003676   GO:0008270   GO:2000648   GO:0098724   GO:0005829   GO:0046628   GO:0048477   GO:0003729   GO:2000632   GO:0016021   GO:0003677   GO:0006355   GO:0007165   GO:0005085   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

Subcellular location

Cytoplasm  

Length:

177

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00112

Exp number, first 60 AAs:

0.00112

Total prob of N-in:

0.07943

outside

1  -  177

 

 

Pi

194.22664

Theta

179.524264

Tajima's D

-0.980412

CLR

0.853754

CSRT

0.143092845357732

Interpretation

Uncertain