SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13118
Pre Gene Modal
BGIBMGA000316
Annotation
broad_complex_isoform_7_[Helicoverpa_armigera]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.314
 

Sequence

CDS
ATGGCCGACCAATTTTGTTTACGCTGGAACAATTTTCAATCGAATATTGTGAGTGCATTGGATTCCTTAAAATGTTCTGAAGATTTAGTTGATGTGACGCTTACTTGTGAAGGTAGAAATATCAAGGCCCACAAAGTCATTTTGTCAGCGTGCAGTCCGTACTTCAGGAATGTGTTCAAGGAAAACCCATGTCAGCATCCAGTGATCATTTTGAAAGATGTGTCTGCAGATGATATTGTGAGCTTGTTGTCATACATGTACCAAGGTGAAGTTTTCATTGAAGAGAGTAAATTGTCTTCATTTCTTCACACTGCTGCCTTATTGCAAGTGAAAGGACTGACTGGAGTAACTCAACAGAAAGAAAACTTTACATCACCTAATACATCAAACAAACTATACACTCAGTTAACAATTTCATCAAGACCACACCACAATGCCTCCCACAAGGATGCAAAGTTACCAGGACTAAAGAAACGCAGAAGCAGCACTTCAGACAAGCCAAATGATGTGTCAGTCGGTGACAGTTACAAAAAAACCAAGGTCCTGGATACATGTGATATTCCTAGATTAAACAATTTTTCACAATCTTCCAAAATTGACAATGTGCTTCCTGTTGAAAACAATGTTGACAAGAAATGTGATGGAAAAAATGACTCTCCACTAATAACTGCCAATGGGAAAAGTACATCATCTCAGGTGCATGATTGTTCAATACCAATGAAAACCGAAGTGCTTGATGATAATTCAACTGAATTATCAACTGCCATTCTATCAGAACAAGATGACAGCCTTCCAGATTATGAAAACAGCATGCTTGCAAGGTCCTTGTTATCAGGAATTAATCCTTCAAAAAGTGACAGTGCCAGTAATTTATCAGGAAAAAAACCAGTTAATATTGGAGAAATAGGTCCCAGTAGATCAAAAGATTCAAACACTGAAACTGTTTCACACAATAATTCATCTAGGAGTCCAATAAAAAACACATCTGATGAAGTACAAGTAAAACCAGAAAGACAGTCACCAAAATCTGATGTGGAGTATGAACCAGAAGTACTTCTCTCTGAACATCAAGATGGTGATACAGAGAACACATATAATCAAGAACAATCGCAGGCTTTATTACTACTTGCTGGCATGTCCACTGTACCAGGTTTGGGAGGTGGAGCTTCAACATCGCAAATAATGTCCCACCAACAATCTAACCATGCTGCTATTTGTGGGGATTGCCCGCATTGTGGAATGAAATATTCTAATCAGTCAGCACTCAAATATCATGTAAGGTTAATGCATTCAGATTTAACGAATAGATTGTGTTGCTATTTGTGTCCAAGATCGTTCACAATGCGTGAAACTTTTAAGGAGCACATGTGGACAAGTCATGGTCAAAGAAACTAA
Protein
MADQFCLRWNNFQSNIVSALDSLKCSEDLVDVTLTCEGRNIKAHKVILSACSPYFRNVFKENPCQHPVIILKDVSADDIVSLLSYMYQGEVFIEESKLSSFLHTAALLQVKGLTGVTQQKENFTSPNTSNKLYTQLTISSRPHHNASHKDAKLPGLKKRRSSTSDKPNDVSVGDSYKKTKVLDTCDIPRLNNFSQSSKIDNVLPVENNVDKKCDGKNDSPLITANGKSTSSQVHDCSIPMKTEVLDDNSTELSTAILSEQDDSLPDYENSMLARSLLSGINPSKSDSASNLSGKKPVNIGEIGPSRSKDSNTETVSHNNSSRSPIKNTSDEVQVKPERQSPKSDVEYEPEVLLSEHQDGDTENTYNQEQSQALLLLAGMSTVPGLGGGASTSQIMSHQQSNHAAICGDCPHCGMKYSNQSALKYHVRLMHSDLTNRLCCYLCPRSFTMRETFKEHMWTSHGQRN

Summary

Pfam
PF00651   BTB        + More
PF00096   zf-C2H2
Interpro
IPR011333   SKP1/BTB/POZ_sf        + More
IPR036236   Znf_C2H2_sf       
IPR000210   BTB/POZ_dom       
IPR013087   Znf_C2H2_type       
SUPFAM
SSF57667   SSF57667        + More
SSF54695   SSF54695       
PDB
4HXI     E-value=2.33299e-08,     Score=141

Ontologies

Topology

Length:
464
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.06687
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00816
outside
1  -  464
 
 

Population Genetic Test Statistics

Pi
253.572998
Theta
225.346211
Tajima's D
0.403111
CLR
0.000278
CSRT
0.486775661216939
Interpretation
Uncertain
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