Silkworm Genome Informatics Database

Gene

KWMTBOMO13107

Pre Gene Modal

BGIBMGA000313

Annotation

PREDICTED:_neuropeptide_receptor_A23_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr22(+):8453736-8457005 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.165 PlasmaMembrane Reliability : 1.916

CDS

ATGCTCGTACTCGTAGTGGCACTCTTCGCACTTTGCTGGCTTCCCCTTCAGAGTTATTTACTACTGCAGTCCTTCTTCCCCTCCATAAATGAGTACAGATACATAAACGTGATCTTCTTCTGTTTCGACTGGCTCGCCATGAGTAATTCCTGCTATAATCCGTTCATCTACGCCATATACAACGAAAAATTCAAGAAGGAATTTAAACAACGATTCACCTTTGGGAAAAAACCCAATAGATTCGCCAATGACAGTTATGAGGACGGCCAATCCTATAGGACTCGGATTCTGTCTTTCCGCTCAACCAACGACCGATGTTTATACTCAACAAGAAAATCGATTAACATTACACCCGACGATTCTCTTAGGTTGTCGACACATAGCTCTGTCCAATACACGAACAACCAGAGCCGTGAGAACGGCTGTGAATGTACTAAAACCGAAGAAGCACAAGCCCGCATCACAGCAAGGAGGTACGCCAACATGAGAATGGGATGCCGACACCCAAACGCAAGAAAATGCTTCTCGAAGACCAATGAAACTGACGAGATGCCAATAGGCGACGAGAGAGTTAGCGAACTATAA

Protein

MLVLVVALFALCWLPLQSYLLLQSFFPSINEYRYINVIFFCFDWLAMSNSCYNPFIYAIYNEKFKKEFKQRFTFGKKPNRFANDSYEDGQSYRTRILSFRSTNDRCLYSTRKSINITPDDSLRLSTHSSVQYTNNQSRENGCECTKTEEAQARITARRYANMRMGCRHPNARKCFSKTNETDEMPIGDERVSEL

Similarity

Belongs to the G-protein coupled receptor 1 family.

Uniprot

B3XXN6 H9IST6 A0A2H1V4A9 A0A0S1YDH9 A0A3S2NBZ9 A0A1E1WPS7 + More
A0A212EZN3 A0A194PYP8 A0A194R2D5 A0A336K8Z1

Pubmed

18725956 19121390 22118469 26354079

EMBL

AB330444 BAG68422.1 BABH01013133 ODYU01000602 SOQ35678.1 KT031021 + More
ALM88319.1 RSAL01000111 RVE47083.1 GDQN01002029 JAT89025.1 AGBW02011240 OWR46958.1 KQ459586 KPI97874.1 KQ460883 KPJ11410.1 UFQS01000124 UFQT01000124 SSX00108.1 SSX20488.1

Proteomes

UP000005204 UP000283053 UP000007151 UP000053268 UP000053240

PRIDE

B3XXN6 H9IST6

Pfam

PF00001 7tm_1

Interpro

IPR017452   GPCR_Rhodpsn_7TM        + More
IPR000276   GPCR_Rhodpsn
IPR000611   NPY_rcpt

ProteinModelPortal

B3XXN6 H9IST6 A0A2H1V4A9 A0A0S1YDH9 A0A3S2NBZ9 A0A1E1WPS7 + More
A0A212EZN3 A0A194PYP8 A0A194R2D5 A0A336K8Z1

PDB

6HLP E-value=5.38763e-10, Score=150

KEGG

100174934 K14071 leucokinin receptor | (RefSeq) NGR-A23, BNGR-A23; neuropeptide receptor A23

GO

GO:0016021 GO:0004983 GO:0004930 GO:0007186 GO:0005886 GO:0007155 GO:0003824 GO:0008237 GO:0008152 GO:0016491 GO:0015930

SignalP

Position: 1 - 18, Likelihood: 0.569079

Length:

194

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

40.81756

Exp number, first 60 AAs:

40.68972

Total prob of N-in:

0.73032

POSSIBLE N-term signal

sequence

inside

1 - 1

TMhelix

2 - 24

outside

25 - 33

TMhelix

34 - 56

inside

57 - 194

Pi

289.513289

Theta

208.795801

Tajima's D

1.061333

CLR

0

CSRT

0.675766211689416

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics