SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13100
Pre Gene Modal
BGIBMGA000388
Annotation
Collagen_[Bombyx_mori]
Location
Bomo_Chr22(-):8315266-8341964      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.124
 

Sequence

CDS
ATGGGACCCGGAATAATGATTAAATTTTGTATCTTGGCGGTGCTAGCATTGTCACTGGTTAGCGCCGATAAGCCAAAAACTGAGACAACTTCAACGACCGCGAAAAAGGCAACTGAAGTACCCGCGAAGAAGACAGTCGAAGTACCTTTGAAGAAGGCATCTGAAGTGCCCGTGAAGAAGGCATCAGAAGTGCCAACAAAGAAGCCCCATGTAGAACCCGCGCGTGAAGGAAGGCAGTTGAGTCCTTACCCTGGACAACAAGACAACGAAGTGGTGGTCGACATTCAGGACGACGAAAAGAAGCAGTACTACGAAACCAACTATGACACAAGTGCGTATGGTTTCGGATACGATGTCGGCCCAAACGGACAGTTTCATCACGAGAACCGCGGTCCCGATGGTGTCGTCTACGGATGTTATGGTTACGTCGACACCGAGGGCTACCTCCGCGCCACCCACTACGTTGCCGACAGCCACGGCTACCGAGTCGTAGAACCAGAAAAACCTGTCGAAGTTTTCCCCGATGAGAAATACGAATATGACGAAAATTACGAACCCACGCCATCCGCGACGGGTCAAACCATTCCGTGGAATAAGTTATTCTTCCCCCAGGGATGCGGTCGCACTCCTGGCGGAGTTCCACCCCAACCGTTCAAACCAAAACCTAAACCTAAACCCCCTGTAGATAGCACCGGACAAACTAGCAACCCCAGTCCTGGCGTCGCATACCCTGGTCAAGGCCCTAATGGCCCTTACGGTCCTGGCGGCTCCGGCGGCTCCGGCGGCCCTGGTGGTCCCGGAGGACCAAATGGACCTTACGGACCTGGTGGTCCCGGAGGACCAAATGGACCTTACGGACCCGGCGGTACTGGCGGACCTAATGGTCCTTATGGCCCAGGTGGTCAAGATGGCTCATACAGACCAGACGGCTCCTACGGTCCAGACGGATCTTATCAACCGGAAGGTTCCTACGGACCCGACGGATCATGGCAAGGTGGTTACTATCCTGGCACTCCTGGATCGCCTGGAACTCCTGGGTCGCCTGGCAGCCCTGGATCCCCTGGTAGCCCGGGTACTCCTGGTTCTCCAGGCACACCAGGAACACCTGGTTCAGGCGGTGGATACTATCCTGGACAAGACGGAACAGGGGGACCGACTGGTCCTTCAGGCGGGGGAGGTGGCTACTATCCAGGTAGTCCCGGCAGTCCTGGAACCCCCGGCACTCCAGGCACACCCGGAACACCAGGTGGCCCTGGGGGTCCAGGTGGACCAGGTGGACCAGGTGGTCCAGGAGGGCCAAACGGTCCAAATGGGCCTGGAGGATCTGACGGCGGTCAATATTATCCTGCACTGCCCGGTAGTCCCGGTACACCCGGCTCCCCAGGCACTCCTGGTGGACCTGGTGGACCTGGTGGTCCCGGAGGCCCTGGGGGACCAGGCGGCCCAGGCGGCCCGGGAGGTCCAGATCAACCAAGCTACCCTGGACAGCCAGGACAGCCTGGTACACCAGGATATCCAGGACAACCAGGATACCCAGGACAACCCGGTACACCAGGACAACCAGGAACACCAGGCCAGCCAGGCTATCCAGGACAAGGTGGACAACCTATAAATCCTGGTCAACCAGGATACCCAGGCCAGCCCGGACAACCAGGATACCCGGGACAACCAGGTCAGCCAGGAACACCAGGACAACCCGGAACGCCTGGACAACCAGGAACGCCAGGACAACCAGGACAACCCGGCTATCCAGGAACTCCTGGGCAACCAGGGCAATCCGGATATCCAGGACAGGGTGGACCACAACAGGGAGGTCAGCCTATAAATCCTAGTCAACCCGGATACCCAGGTCAACCAGGACAACCTGGATATCCAGGCCAGCCCGGACAACCAGGAACACCAGGTCAACCCGGAACACCAGGTCAGCCTGGAACACCAGGACAACCAGGACAGCCCGGAACACCAGGACAACCAGGAACACCAGGACAACCAGGACAAGGTGGACAACCGATAAAACCTGGTCAGTCTGGATACCCAGGCCAGTCAGGTCAACCAGGATATCCAGGACAACCAGGACAGCCAGGAACACCAGGCCAGCCCGGAACACCAGGGCAGCCAGGTCAACCGGGACAGCCAGGGACTCCAGGCCAGCCCGGAACACCAGGGCAGCCAAGCTATCCAGGACAAGGTGGACAACCTATAAAGCCTGGTCAGCCAGGATACCCAGGTCAGCCAGGCCAGCCGGGATACCCAGGACAAGCAGGACAGCCAGGAACACCAGGATACCCAGGACAGCCAGGGACTACAGGCCAGCCCGGAACACCAGGGCAGCCAAGCTATCCAGGACAAGGTGGACAACCTATAAAGCCTGGTCAGCCAGGATACCCAGGTCAGCCAGGCCAGCCGGGATACCCAGGACAACCAGGACAGCCAGGAACACCAGGACAGCCAGGAACACCAGGACAGCCAGGAACACCAGGCCAGCCCGGAACACCAGGACAACCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAGCCTGTAAATCCTGCTCAGCCGGGATACCCAGGACAGCCAGGTCAGCCAGGATACCCAGGACAACCAGGACAGCCAGGAACTCCAGGACAGCCCGGAACACCAGGACAGCCCGGAACACCAGGACAACCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAGCCTGTAAATCCTGCTCAGCCGGGATACCCAGGTCAGCCAAGTCAGCCGGGATACCCAGGACAACCAGGACAGCCAGGAACACCAGGACAGCCAGGAACACCAGGACAACCAGGGCAGCCCGGAACACCAGGACAACCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAGCCTATAAAGCCTGGTCAGACAGGATACCCAGGTCAGCCAGGCCAGCCGGGATACCCAGGACAACCAGGCCAGCCAGGAACACCAGGACAGCCAGGAACACCAGGACAGCCAGGCCAACCAGGCTACCCAGGACAAGGTGGACAGCCTATAAAGCCTGGTCAGACAGGATACCCAGGTCAGCCAGGCCAGCCGGGATACCCAGGACAACCAGGACAGCCAGGAACACCAGGACAGCCAGGCCAACCGGGACAACCCGGTACACCAGGCCAGCCCGGAACACCAGGACAACCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAGCCTGTAAATCCTGCTCAGCCGGGATACCCAGGACAGCCAGGTCAGCCAGGATACCCAGGACAACCAGGACAGCCAGGAACTCCAGGACAGCCCGGAACACCAGGACAGCCCGGAACACCAGGACAACCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAGCCTGTAAATCCTGCTCAGCCGGGATACCCAGGTCAGCCAAGTCAGCCGGGATACCCAGGACAACTAGGACAACCAGGAACTCCAGGACAACCAGGACAGCCCGGAACACCAGGACAGCCCGGAACACCAGGACAACCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAGCCTATAAATCCTACTCAGCCGGGATCCCCAGGTCAGCTAGGTCAGCCAGGATACCCAGGACAACCAGGACAGCCAGGTACTCCAGGACAACCAGGTCAACCAGGAACACCAGGACAACCAGGAACACCAGGACAACCAGGACAAGGTGGACAACCGATAAAACCTGGTCAGTCTGGATACCCAGGCCAGCCAGGTCAACCAGGATACCCAGGACAATCAGGACAGCCAGGTACACCAGGCCAGCCCGGAACACCAGGGCAGCCAGGACAACCGGGGCAGCCAGGAACACCAGGACAGCCAGGTCAACCGGGACAGCCCGGTACACCAGGACAACCAGGCTATCCAGGACAAGGTGGACCACAACAGGGCGGTCAACCCATGAATCCTAGTCAACCTGGATACCCCGGCCAACCAGGGCCACCCGGATACCCAGGACAACCAGGTCAACCAGGACAACCAGGGCAGCCCGGAACACCAGGACAACCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAGCCTATAAAGCCTGGTCAGACAGGATACCCAGGTCAACCAGGCCAGCCGGGATACCCAGGACAACCAGGCCAGCCAGGAACACCAGGACAGCCAGGAACACCAGGACAGCCAGGCCAACCAGGCTACCCAGGACAAGGTGGACAGCCTATAAAGCCTGGTCAGACAGGATACCCAGGTCAGCCAGGCCAGCCGGGATACCCAGGACAACCAGGACAGCCAGGAACACCAGGACAGCCAGGCCAACCGGGACAACCCGGTACACCAGGACAGCCAGGACAACCAGGCTATCCAGGACAAGGTGGACCACAACAGGGCGGTCAACCCATGAATCCTAGTCAACCTGGATACCCCGGCCAACCAGGACAACCAGGATACCCAGGACAACCAGGACAACCAGGCCAGACCGGAACACCAGGACAACCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAACCTATAAAGCCTGGTCAGCCAGGATACCCAGGTCAGCCAGGACAAGGTGGACCACAACAGAGCGGTCAACCAATGAATCCTAGTCAACCTGGATACCCCGGCCAACCAGGACAACCAGGATACCCAGGACAACCAGGTCAACCAGGACAACCTGGACAACCGGGTCAACCGGGGCAGCCCGGTACAGCAGGACAACCAGGCTATCCCGGACAAGGTGGACAACAACAGGGCGGTCAGCCCATTAATCCTAGTCAACCTGGATACCCCAGCCATCCAGGACAACCAGGATACCCAGGACAACCAGGTCAACCAGGACAACCAGGCCAGCCCGGAACACCAGGACAACCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAGCCTATAAAGCCTGGTCAGCCAGGATACCCAGGTCAGCCAGGCCAGCCGGGATACCCTGGACAACCAGGACAGCCAGGAGCACCAGGCCAACCGGGTCAGCCAGGACAACCAGTGCAGCCCGGAACACCAGGACAAGCAGGTCAACCAGGCTACCCAGGACAAGGTGGACAACCTATAAAGCCTGCTCAGCCGGGACACCCAGGCCAGCCTGGACAACCAGGGCAGCCCGGAACACCAGGACAACCAGGTCAACCAGGATACCCAGGGCAACCGGGTCAGCCAGGACAACCAGGGCAACCAGGACAACAAGGCTATCCAGGACAAGGTGGACCACAACAGGGCGGTCAGCCTATTAATCCTAGTCAACCTGGTTACCCAGGCCAGTCAGGACAACCAGGTTACCCTGGACAACCGGTTCAGCCAGGACAACCAGGGCAGCCCGGAACACCAGGGGAACCGGGACAGCCCGGTACACCAGGACAACCTGGCTATCCAGGACAAGGTGGACCACAACAGGGCGGTCAGCCTATGAATCCTAGTCAACCCGAATACCCAAGCCAGCCAGGACAACCAGGACAGCCAGGAACACCGGGACAAGCAGGACACCCAGGACAACCTGGACACCCAGGCGCACCAGGACAACCAGGTTACCCAGGACAACCCGGACAGCCGGGCGCACCAGGACAAGCAGGTTACCCAGGACAAGGTGGACCGCAACAGGGCGGTCAGCCTATAAATCCTAGTCAACCAGGACATCCAGGGCAGCCAGGACAGCCGGGTCAACCAGGGCAGCCAGGAAAACCCGGGCAACCTGGTACACCAGGGCAGCCTGGAGCTCCAGGGCAACCTGGAACACCAGGACAACCAGGCTATCCAGGACAAAATGGACCACAACAAGGCGGTCAGCCTATTAAACCTGATCAACCCGGATACCCAGGCCAACCGGGAGCACCAGGGCAGCCTGGAACACCAGGACAACCCGGACAGCCAGGAACACCAGGACAACCCGGATATCCAGGACAAGGCGGACCACAACAGGGCGGTCAGCCTATCAATCCCGATCAGCCCGGACAGCCAGGTCCACCAGGATATCCAGGGCAAGGCGGACAACCCATAAATCCTAGTCAATCAGGCTACCCGGGACAACCAGGACAAGGAGGCGATTCCGTCTCGTCGGGAACTGGTGTGCAGCCACCGACATATGTTCCATCAACTCAAATGCCACCTTTCCCAATTTATGTCATACCTTTTCCATTGCCTATCGTACCAAGTCCAGGATCATGTCCCTGCTATTTATTAAATCCTGGAAATAACGGTACAGCAACGAACGAAATGCAAGCATCCTCACATCCCGCAAATGGACAGAGTCAAGGATATGCTCCGTACGGTATTATAGGATTCATACCTGTTGTTTTCGTTCCCTATTGTCCAGGAAATGGGAGTGCGATGAACACTGCACAACAAAACTTCCCTCAAGCAGTACCGGTGCAATACAATTGTGCCCAATGTCAGGCCAATCGAGATGTCTACAGATTCGCAGGCCGACACAATGGCGCCAGAGCGTTCAAAGAGCTTAAAGAACTTAAATCGCTGGACGAACTTAACGATCTCATTCGAAATAGAATAAAACCTACCAAGAGGACATTACGTCAAATTGCAGCACATCCAAAAATACTTGAAACAAAACACTAG
Protein
MGPGIMIKFCILAVLALSLVSADKPKTETTSTTAKKATEVPAKKTVEVPLKKASEVPVKKASEVPTKKPHVEPAREGRQLSPYPGQQDNEVVVDIQDDEKKQYYETNYDTSAYGFGYDVGPNGQFHHENRGPDGVVYGCYGYVDTEGYLRATHYVADSHGYRVVEPEKPVEVFPDEKYEYDENYEPTPSATGQTIPWNKLFFPQGCGRTPGGVPPQPFKPKPKPKPPVDSTGQTSNPSPGVAYPGQGPNGPYGPGGSGGSGGPGGPGGPNGPYGPGGPGGPNGPYGPGGTGGPNGPYGPGGQDGSYRPDGSYGPDGSYQPEGSYGPDGSWQGGYYPGTPGSPGTPGSPGSPGSPGSPGTPGSPGTPGTPGSGGGYYPGQDGTGGPTGPSGGGGGYYPGSPGSPGTPGTPGTPGTPGGPGGPGGPGGPGGPGGPNGPNGPGGSDGGQYYPALPGSPGTPGSPGTPGGPGGPGGPGGPGGPGGPGGPGGPDQPSYPGQPGQPGTPGYPGQPGYPGQPGTPGQPGTPGQPGYPGQGGQPINPGQPGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGQPGYPGTPGQPGQSGYPGQGGPQQGGQPINPSQPGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGQPGTPGQPGTPGQPGQGGQPIKPGQSGYPGQSGQPGYPGQPGQPGTPGQPGTPGQPGQPGQPGTPGQPGTPGQPSYPGQGGQPIKPGQPGYPGQPGQPGYPGQAGQPGTPGYPGQPGTTGQPGTPGQPSYPGQGGQPIKPGQPGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGTPGQPGQPGYPGQGGQPVNPAQPGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGQPGYPGQGGQPVNPAQPGYPGQPSQPGYPGQPGQPGTPGQPGTPGQPGQPGTPGQPGQPGYPGQGGQPIKPGQTGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGQPGYPGQGGQPIKPGQTGYPGQPGQPGYPGQPGQPGTPGQPGQPGQPGTPGQPGTPGQPGQPGYPGQGGQPVNPAQPGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGQPGYPGQGGQPVNPAQPGYPGQPSQPGYPGQLGQPGTPGQPGQPGTPGQPGTPGQPGQPGYPGQGGQPINPTQPGSPGQLGQPGYPGQPGQPGTPGQPGQPGTPGQPGTPGQPGQGGQPIKPGQSGYPGQPGQPGYPGQSGQPGTPGQPGTPGQPGQPGQPGTPGQPGQPGQPGTPGQPGYPGQGGPQQGGQPMNPSQPGYPGQPGPPGYPGQPGQPGQPGQPGTPGQPGQPGYPGQGGQPIKPGQTGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGQPGYPGQGGQPIKPGQTGYPGQPGQPGYPGQPGQPGTPGQPGQPGQPGTPGQPGQPGYPGQGGPQQGGQPMNPSQPGYPGQPGQPGYPGQPGQPGQTGTPGQPGQPGYPGQGGQPIKPGQPGYPGQPGQGGPQQSGQPMNPSQPGYPGQPGQPGYPGQPGQPGQPGQPGQPGQPGTAGQPGYPGQGGQQQGGQPINPSQPGYPSHPGQPGYPGQPGQPGQPGQPGTPGQPGQPGYPGQGGQPIKPGQPGYPGQPGQPGYPGQPGQPGAPGQPGQPGQPVQPGTPGQAGQPGYPGQGGQPIKPAQPGHPGQPGQPGQPGTPGQPGQPGYPGQPGQPGQPGQPGQQGYPGQGGPQQGGQPINPSQPGYPGQSGQPGYPGQPVQPGQPGQPGTPGEPGQPGTPGQPGYPGQGGPQQGGQPMNPSQPEYPSQPGQPGQPGTPGQAGHPGQPGHPGAPGQPGYPGQPGQPGAPGQAGYPGQGGPQQGGQPINPSQPGHPGQPGQPGQPGQPGKPGQPGTPGQPGAPGQPGTPGQPGYPGQNGPQQGGQPIKPDQPGYPGQPGAPGQPGTPGQPGQPGTPGQPGYPGQGGPQQGGQPINPDQPGQPGPPGYPGQGGQPINPSQSGYPGQPGQGGDSVSSGTGVQPPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHPANGQSQGYAPYGIIGFIPVVFVPYCPGNGSAMNTAQQNFPQAVPVQYNCAQCQANRDVYRFAGRHNGARAFKELKELKSLDELNDLIRNRIKPTKRTLRQIAAHPKILETKH

Summary

Uniprot
NA  
ProteinModelPortal
NA  

Ontologies

KEGG
693056    K06237 collagen, type IV, alpha | (RefSeq) CPR146, BmorCPR146; collagen
PATHWAY
04512    ECM-receptor interaction - Bombyx mori (domestic silkworm)
04933    AGE-RAGE signaling pathway in diabetic complications - Bombyx mori (domestic silkworm)
GO
GO:0042302   GO:0007165   GO:0004375   GO:0006546   GO:0006544   GO:0003824   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

Topology

SignalP
Position:   1 - 22,         Likelihood:  0.995819
 
 
Length:
2191
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.21061
Exp number, first 60 AAs:
0.24668
Total prob of N-in:
0.01359
outside
1  -  2191
 
 

Population Genetic Test Statistics

Pi
207.835968
Theta
173.434135
Tajima's D
0.539605
CLR
0.09103
CSRT
0.523573821308935
Interpretation
Uncertain
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