SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13091
Pre Gene Modal
BGIBMGA000310
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC106132723_[Amyelois_transitella]
Location
Bomo_Chr22(+):8210545-8223848      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.983
 

Sequence

CDS
ATGGAAACAATAAGTGTGAATCAACCGATAAATTTAAAAGTGGTACGATTTGAGTTGGATTTTAGCAAATTACTCCCAGAAGAGCCGATACGAGAGAAGAAAAGCAAGAAAATTCGTGTACCGAAACCCAAAAGTAGAAAACGATCCATTGTACCACCCCCACCAGCAATCAATTGCTCTCAGAAACGAGATGTAAAGGAACTCGTGGAAGAATTACTTGAAGAACTTTACTCTGATCAACGAGACTGGAGCTGCCACAGTACTGTAGACTGCAGCCGCGGGTCTACTTCGGCGGCGTCCTTGACATCTTTGCAATCCAATTATGTAGAAACCGAAGCAATTGAAAGGAATTACTTGGAGTGCTTAGAGATTGAAGAGCTGAGAGAGCAAACAGCAGAATGTCAAATGAGATTTCAGTATTTCGGAGATAGATTAGCAAGATGTGTGAAAACCCGCGATAGATTACGTCGCAAACAGAAGAGATTTTGCGCAGCCCTCACTATATTATTACGGCATATAAGAAAAACCACTACAGCGGGAGAGAGCGGTGCGCGCTTTAGCGTAACGCCTGGGGGAAGCGGCGACGGACCCGGAGAAGGCGGATATGCGGAATGGCTCCATGCTATGAGACTTGTGGCCCGTCTGCCTGCTGGAGTCCCCCAACATTTTCGTAAGAAGCTATGGTTGACCTTGGCCGAGAGAAATTTAACCGCACGCGGCGTGGATTGGCTGGTAGCAGAGCGAGCTTGCTTCCGAGGAACTGCCCAACCAGATGACACTGAACTTGGGGCACAAATACTTAAAGACTTACATCGAACGGGATGCTCTTTATTTTGTGGTGCCGAAGGAAGAGAAAATCAAGCTATGCTTCGGAGAGTTTTGTTAGCATACGCGAGGTGGAATAAGGAGGTTGGGTACTGTCAAGGCTTTAATATGTTAGCAGCGATCATTCTGGAAGTTATGGATAAATCCGAATCGGATTCTCTAAAGGTAATGATATACTTAGTGGAAGCGGTTCTACCCGAAGGATATTTCGCAGATGACCTTCGAGGACTTTCAGCAGATATGGCAGCGTTCAGAGATTTACTACGGCTACGTTTACCGCGACTGGCACATCACATGGATCATCTACAGAGAATATCGGATGGTGGCGGCATAGAACCTCCACTGCCTGATGTGTTTACTATGCAATGGTTTTTAACATTATATGCAACATGGCTACCTCGCGAGTCACTCCTTAGGATATGGGATTTAATACTTCTCGATGGAAATGAAGTTTTACTGTTAACAGCACTCGCTATATGGGACATGCTACAAGACCGGATCTTGTCTGCGCGTTCAGCTGACGAATTTTACAGCTGTATGGGTGGTGGTGCCGGTGCAGTTTGGGAAGCTGGAGACTCCCTTGTCGCTAGAGTCGTGGCATTTGGCTCTGCACCAGAACTACCCAGATTACGAAGCCTTCATCGCTACAGAGTTGCTCCGCCAGCACCACCGACAACAGCTCCCATATATTATCCACCCATACAATCTGCGATGCAATCAATGACTAAAAGAGGATTACGATTATTTTATTCAGAGGATGAAGGTGATTCCAGTGATGATGGAAACAAAATGGCACTAGCAACGGTGATGCCAAGAAAAGAAGAACGCATAGGTGCAGGAGATAGACTGACTTTAGATATAGGTGCTTTGAAACGCCAGTACGCTCGCTTGCGTGAGCGACAAAGACAAGCTCATGTGATATTGGCTGCTGCGTGTGCCAGACATGCGGCAGTTGGAGTGCCCACTTCGCCGACTTCCCTGACAGTTAATAATCTTCTACTGGGAAAAAGTGCCATTGTTAGTTCACGAGGACGACGATTAGGAGCCCCGCCCGGAGCAATACCACCTTTACGGCAGTCAAAGATAGTTGAAAAAAGTCCAGAAGTTGGACCACGAGCTCGTTCGAATGAAACAATTAGTTGGAATGAAGAAAAGAGCCGTAAATCACTTAGCAGAAGGAATTCTGTTAAGTGGAAGGATATCAGAAAAGATAAATCATTTGAACGTAAGAGAAAAACGTCAATAGATTTAGACGAAATTGGAGGTGGGGTAATTGTGTCTGAAATTGAAGCTAATCAAATGATAGCATCGATAAGATCAAGGAGTTCTAGTGAAACTTCCACTTATTCTTCAAACACTTCGAGTACCGATACAAGTCTTTGTGATGAAAATGAACGCGGTAGTGATTCTGAACCGGATATTTCAGATGACGGTAAAGAAAAAAGAAAAGAATCTTCCGGGATAAAGGGCACTCATTTGCATAAAGGGTACCCGATGGTTTTGAAAGAAACAAAAATTGCACCCTGCAATCCTTTGAAAGAAGAATCTGGGTTCAATAATGATAACAACAAACTCTACAATTGCAGTGAACAATCTATAAAATCTATAACAGAATATCTTGACTCTGCTGCAGGGAAACCTCTTCGTACTTACATTGGCGGGTTTGAAACTAAACTAAAAGATAGCTTGAATATAGATAATGAATGTGACGATTCTCTTAAAAGAAATGTTTTACCACAATCTTCTAGTCTAGTTTCAGATAAAAGTGACATTTTACAAAGAAACTGTTCCATGAATTCATCAGATTTAATGCCGCCTACAAATATTCCCAAAACTGCTAACAATTTTACTGACCTAAGTCCTATTGACTTGTCGCCTTATAATTACAATAAGTCACCATTTGACTACGATTTTGCATCCAACTTTATACGTCCAGTAAATACGGAAGCTTCACCATCTATAAGACCCCCGGACATAATTGATTCTTTTACTATGTATCCTAACTTCGTACCTGATATAGATTTATCTGATAAGAATATATCGGATGTAGACAGTCCTCCAAAAAGCCCCGGTGCTGAAAGTATCATAGTGAGTGAAGATGAGCCACCCATACCATTAAAGATTGACAAATATTTTGAACACAGTCCAGAGTTTTTCGGTGCTCGAATCACTGACCCAAACAGCACAGAAATACCGAACAGACGAGCTACAAGAAGACTTTCACGGCAACCTAAAAAACCTGATTCCTTAACATTACAAAGTAACCTAAATGATAGAAAATTTAAAGAGGAAACCGAAAGAGCTTCTTCGTTGCCTCAAAGTCATAGTTTTCAAAATAAATCTTGCGACCTAGTAGAAATCATACCTAAAGTACAAGTGCTTGAGTTGACTGATCAAACAAAATACGATCAAAGTTCTAATTCTCCAAAAGAATATCTTTCAACAATCGGTAGGAAAAATAGTGAAAGAGCTTTACAAATTATTCAAGAAAATTCTAAAATTTTAAGTAGAATATTAACAAAACAAAACATTTCTGAAACTCCATATTTTAATCAAAGCCTCAGTCCTAATGTAAGCGAAGAAAAATCAGATAAACTCACAAGTTTGCAATGTTATAAAATACCAGAAAAAACTACTCTACTAAAAGAATCTACCTCAGACTCATTGATTGGATACCGGAAAAGGTATTCAAAAAATGATCATAACGATAACGACTTTATGAGAATAAGACCGATATCCATTGATGATCCATTTTCTTTAGAATCTCGAAACGTAGCATTAGCAAAAACAGAAGACTTTAAAACAACAAAAAGTCCGAGTAGTGAATGCTTAGGTAATAAAACAGATTGTTATGGATGGGAAAATAAAGCTTTTTTAGGTAAATGTGAATTAAATAAAATCATAGAAAAGTCAGAAATTAACTCCATAAACAATCCTGGTCAGAAAGGAAACGAATTATCCAGTCAGAGTGACTATAAAAAAGAAATAAATTCTTCCACAACTCCAGTCTGGATGAAGCGATCTTTTTCGCGTGAATCGAAAACTTCGGTGACGTTGCCATCAACGGAAACGAGAGATACTTCCTATGACCGTAAATTTGGTTCGGATGAATATAGTTATCCACTGTCCAAAAAATATAATGACTTTGTTATTTCTAGGGCTAGTGATATATGTAGTGAAACGGTCAACGAAGGACCAAAAATCTGTGAAAAAATATCTAAGACTGAAAACAGCCAAGTTAGTGATTTTGCTCATGTTGTGACTTCTTCTATTAGTTTCACTTATGAACCTTCCTTAGACGACGATTCTGGTGGGGCAAAAAGTAATTCGAGTGACACTTTGTGTCAAATTACTTCACTTGATCAAGTTTCTACTCCAATCTCACCTAAAATATTCCCAAAGGATACCTCATCTATGCCAAGAGAACAGTGCGAGCGGGTAGATAAAACCAAAGCAGACTCTGACGATACGTGTAGTGCAATAACTTCTCTTATAGAAACAGACACACTATCTTCTCTTTCATACCCTCAGAGTCCGTCAACAGGTTCTTACCACCCATTCCCTGCACGTCCAGTCATGCGTATGCCTAAAGAAATTGGAGTGAAACTTGGAATGTATCCAAAAGATGTCATTAGTTCTCCACCAAAACAATGA
Protein
METISVNQPINLKVVRFELDFSKLLPEEPIREKKSKKIRVPKPKSRKRSIVPPPPAINCSQKRDVKELVEELLEELYSDQRDWSCHSTVDCSRGSTSAASLTSLQSNYVETEAIERNYLECLEIEELREQTAECQMRFQYFGDRLARCVKTRDRLRRKQKRFCAALTILLRHIRKTTTAGESGARFSVTPGGSGDGPGEGGYAEWLHAMRLVARLPAGVPQHFRKKLWLTLAERNLTARGVDWLVAERACFRGTAQPDDTELGAQILKDLHRTGCSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLPEGYFADDLRGLSADMAAFRDLLRLRLPRLAHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRILSARSADEFYSCMGGGAGAVWEAGDSLVARVVAFGSAPELPRLRSLHRYRVAPPAPPTTAPIYYPPIQSAMQSMTKRGLRLFYSEDEGDSSDDGNKMALATVMPRKEERIGAGDRLTLDIGALKRQYARLRERQRQAHVILAAACARHAAVGVPTSPTSLTVNNLLLGKSAIVSSRGRRLGAPPGAIPPLRQSKIVEKSPEVGPRARSNETISWNEEKSRKSLSRRNSVKWKDIRKDKSFERKRKTSIDLDEIGGGVIVSEIEANQMIASIRSRSSSETSTYSSNTSSTDTSLCDENERGSDSEPDISDDGKEKRKESSGIKGTHLHKGYPMVLKETKIAPCNPLKEESGFNNDNNKLYNCSEQSIKSITEYLDSAAGKPLRTYIGGFETKLKDSLNIDNECDDSLKRNVLPQSSSLVSDKSDILQRNCSMNSSDLMPPTNIPKTANNFTDLSPIDLSPYNYNKSPFDYDFASNFIRPVNTEASPSIRPPDIIDSFTMYPNFVPDIDLSDKNISDVDSPPKSPGAESIIVSEDEPPIPLKIDKYFEHSPEFFGARITDPNSTEIPNRRATRRLSRQPKKPDSLTLQSNLNDRKFKEETERASSLPQSHSFQNKSCDLVEIIPKVQVLELTDQTKYDQSSNSPKEYLSTIGRKNSERALQIIQENSKILSRILTKQNISETPYFNQSLSPNVSEEKSDKLTSLQCYKIPEKTTLLKESTSDSLIGYRKRYSKNDHNDNDFMRIRPISIDDPFSLESRNVALAKTEDFKTTKSPSSECLGNKTDCYGWENKAFLGKCELNKIIEKSEINSINNPGQKGNELSSQSDYKKEINSSTTPVWMKRSFSRESKTSVTLPSTETRDTSYDRKFGSDEYSYPLSKKYNDFVISRASDICSETVNEGPKICEKISKTENSQVSDFAHVVTSSISFTYEPSLDDDSGGAKSNSSDTLCQITSLDQVSTPISPKIFPKDTSSMPREQCERVDKTKADSDDTCSAITSLIETDTLSSLSYPQSPSTGSYHPFPARPVMRMPKEIGVKLGMYPKDVISSPPKQ

Summary

Uniprot
A0A3S2NXJ9   A0A2W1BQC5   A0A194R6D1   A0A212EZQ9   A0A194PYN8   A0A2A4IWN8   + More
A0A2H1X3C5   A0A1E1W010  
Pubmed
28756777    26354079    22118469   
EMBL
RSAL01000111    RVE47094.1    KZ150009    PZC75106.1    KQ460883    KPJ11421.1    + More
AGBW02011240    OWR46947.1    KQ459586    KPI97864.1    NWSH01006060    PCG63704.1    ODYU01013141    SOQ59831.1    GDQN01010782    JAT80272.1   
Proteomes
UP000283053    UP000053240    UP000007151    UP000053268    UP000218220   
Pfam
PF15733   DUF4682        + More
PF00566   RabGAP-TBC
Interpro
IPR032738   Tbc1d30_C        + More
IPR035969   Rab-GTPase_TBC_sf       
IPR000195   Rab-GTPase-TBC_dom       
SUPFAM
SSF47923   SSF47923       
ProteinModelPortal
A0A3S2NXJ9   A0A2W1BQC5   A0A194R6D1   A0A212EZQ9   A0A194PYN8   A0A2A4IWN8   + More
A0A2H1X3C5   A0A1E1W010  
PDB
3QYE     E-value=3.87373e-13,     Score=187

Ontologies

KEGG
NA   
GO

Topology

Length:
1492
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00755999999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00020
outside
1  -  1492
 
 

Population Genetic Test Statistics

Pi
254.409404
Theta
192.707693
Tajima's D
0.886049
CLR
0.076068
CSRT
0.626468676566172
Interpretation
Uncertain
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