Silkworm Genome Informatics Database

Gene

KWMTBOMO13089

Pre Gene Modal

BGIBMGA000309

Annotation

PREDICTED:_synapsin_[Bombyx_mori]

Location

Bomo_Chr22(+):8188955-8196922 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.745

CDS

ATGGTCACAGCGCCCAAGTTCCCCGTGGTGATCAAGATAGGGCACGCACATAGCGGCGTCGCTAAGGTGAAAGTGGACTCCCTGGCCGATTTCCAGGACATTGCTGGTGTTGTAGCAATGCTGGGAACTTATTGCACTGTGGAACCGTACATCGACGCCAAATACGATATTCACATTCAAAAGATCGGCACCAACTACAAAGCATTCATGCGCAAATCTATTTCGGGTAACTGGAAAACGAACCAGGGATCTGCTATGCTCGAGGCCATCGGTATGAATGACAGATATAAAATGTGGATTGACGAGGTGAGCGAAATATTCGGAGGACTTGAGGTTTGCGCTTTGGAACTGGTCGTGGGTAAGGACGGTCGCGAACACATCATCGAACTTAACGACTCTGCTACTTCGTTCATGGGAGACTCACAAGAGGAAGATCGTCGTAATCTCGCTGAACTAGTTCTGCAGCGCATGCAGGCGGTGTGTCGTCCAGGTCTAACAAAGACGACATCTAGGTCATCGGTATCGGGTGTTTCGGCAGCAGGATCTCCTGAGGAACGCGGCGGAGCCCTGCCCGGGACCGGTCCACCAACAGCGCCGCCTCCAGCGCCACTCTCCTCAGCCACCAGCATTGACCGCCCGCTGCCACCAATTCCAGCCGAACCCACTCAGCCACCGCCGCCGCCGCTCACCCGACGTGACTCTCAAGCATCTCAATCGTCGACGGTGTCATCTGCGTCGGCAGCTCCGAGCTCAGGTCCGGCGGGCGGCGTGACTGGAGCCGGGTCTGTGGGTCCGGCGGCTCCGGCTCCGACGTCCGGCCGCGGTGGGTTCGCACGCCAGGGCTCGCTTAGCGCCGCGCTCACTGAAGACGCCGAAGACACCATGAAGAACTTACGGAAAACTTTCGCTGGAATCTTCGGTGACATGTAA

Protein

MVTAPKFPVVIKIGHAHSGVAKVKVDSLADFQDIAGVVAMLGTYCTVEPYIDAKYDIHIQKIGTNYKAFMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDGREHIIELNDSATSFMGDSQEEDRRNLAELVLQRMQAVCRPGLTKTTSRSSVSGVSAAGSPEERGGALPGTGPPTAPPPAPLSSATSIDRPLPPIPAEPTQPPPPPLTRRDSQASQSSTVSSASAAPSSGPAGGVTGAGSVGPAAPAPTSGRGGFARQGSLSAALTEDAEDTMKNLRKTFAGIFGDM

Uniprot

A0A2W1BJ98 A0A2H1W7U1 A0A2A4IV91 H9IST2 A0A194PWX6 A0A212EZS6 + More

Pubmed

28756777 19121390 26354079 22118469

EMBL

KZ150009 PZC75109.1 ODYU01006871 SOQ49103.1 NWSH01006132 PCG63641.1 + More
BABH01013159 BABH01013160 KQ459586 KPI97861.1 AGBW02011240 OWR46944.1

Proteomes

UP000218220 UP000005204 UP000053268 UP000007151

PRIDE

H9IST2

Pfam

PF02750 Synapsin_C + More
PF02078 Synapsin

Interpro

IPR001359   Synapsin        + More
IPR020898   Synapsin_ATP-bd_dom
IPR013815   ATP_grasp_subdomain_1
IPR020897   Synapsin_pre-ATP-grasp_dom
IPR016185   PreATP-grasp_dom_sf

SUPFAM

SSF52440 SSF52440

Gene 3D

3.30.1490.20

ProteinModelPortal

A0A2W1BJ98 A0A2H1W7U1 A0A2A4IV91 H9IST2 A0A194PWX6 A0A212EZS6 + More

PDB

1AUX E-value=6.32338e-58, Score=566

KEGG

101740156 K19941 synapsin | (RefSeq) synapsin

GO

GO:0008021 GO:0007269 GO:0005524 GO:0016020 GO:0019843 GO:0005515 GO:0008237 GO:0008152 GO:0016491 GO:0015930

PANTHER

PTHR10841

Length:

309

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08482

Exp number, first 60 AAs:

0.08258

Total prob of N-in:

0.01177

outside

1 - 309

Pi

164.700203

Theta

165.276413

Tajima's D

0.90044

CLR

0.295042

CSRT

0.627018649067547

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics