Gene

KWMTBOMO13087

Pre Gene Modal

BGIBMGA000308

Annotation

PREDICTED:_synapsin_[Bombyx_mori]

Location

Bomo_Chr22(+):8105235-8130475      View in EpiBrowser

Full name

Synapsin      

Location in the cell

Nuclear   Reliability : 3.411

CDS

ATGAAGATTAGTTCTTTATATTTAATAGATAACTTTGGTAGGATTAAAAGTTATAGGTGTAAAATCGTGAGTGGCTACATAGTGTGTGTCGGTTTTGTCCCTCCTGTACGTGTCCCTGTTTGGTGGCGTGGCGGTGGGGCGCGTAGTTCAGTGGAGGCATTGCGCAGATTCAGCTCCGGTGATCTGCAGTCGGAGTGCGATGAGGGCGAGGTGGACCCTTACACGGGCCGCGCGGCCACCACTAGTCAACCCAAGCCGCAAGCTCAAAAGCCCACGTCGCAGGCGACTGGAGGCAGCTTGGGAGGCTCGTCCGGACCTCCGCCAGCGCCGTCTGCTGCAGCAGCTGGTGGGGACCTCTCTCTTAATTTGCGAGGCGGCTCTAGGGGTACATCAGCGCCATCTTCCCCCGCCAAATCTAGAGAGTCCTTGTTGCAACGGGTACAATCTCTCACAGGCGCCGCTCGTGATCAAGGCGCTAATTTACTCGGAAGTGTAACATCGGTAGCGTCAGTGGGCCGTGGTTACAACCGAGACCGATGTGTGACGTTGCTTGTGGTGGACGATCAAAATACCGACTGGTCCAAGTACTTTAGAGGTCGGAGGCTGCCGGGAGAATGGGACATCCGCGTGGAACAGGCGGAATTCAGGGAACTCTCAGTAACTGCGAACTCGGATGGAGCCAACGTTTCCATGGCGGTGTACCGTAGTGGTACGAAAGTGACACGATGTTTCAAGCCTGACTTCGTGCTGGTGAGGCAAAACGTACGTGACGCTGGCGCGGATCATCGCGCTCTACTGCTTGGACTCAAGTTCGGAGGAGTTCCTTCCATCAACAGCCTCAACTCAATTTACCATTTCCAAGATCGTCCTTGGGTTTTTGGACATCTTCTACAGCTTCAGAGGCGCCTTGGACGGGAGAACTTTCCTCTCATCGAACAAACCTACTACCACAACCACACTGACATGGTGAGTAGTTAA

Protein

MKISSLYLIDNFGRIKSYRCKIVSGYIVCVGFVPPVRVPVWWRGGGARSSVEALRRFSSGDLQSECDEGEVDPYTGRAATTSQPKPQAQKPTSQATGGSLGGSSGPPPAPSAAAAGGDLSLNLRGGSRGTSAPSSPAKSRESLLQRVQSLTGAARDQGANLLGSVTSVASVGRGYNRDRCVTLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRELSVTANSDGANVSMAVYRSGTKVTRCFKPDFVLVRQNVRDAGADHRALLLGLKFGGVPSINSLNSIYHFQDRPWVFGHLLQLQRRLGRENFPLIEQTYYHNHTDMVSS

Description

Plays a significant role in nervous system function, which is subtle at the cellular level but manifests itself in complex behavior.

Subunit

Identified in a complex with Syt1 and nwk.

Miscellaneous

Readthrough of the terminator UGA may occur between the codons for 581-Met and 583-Glu.

Similarity

Belongs to the synapsin family.

Keywords

Alternative splicing   Behavior   Cell junction   Complete proteome   Direct protein sequencing   Phosphoprotein   Reference proteome   Synapse  

Feature

chain  Synapsin
splice variant  In isoform C.

Uniprot

H9IST1   A0A2W1BLF9   A0A194PYN3   A0A212EZS6   A0A0L7KW36   A0A194R2F0   + More
A0A154PKA5   A0A158P1M1   A0A139W8P6   A0A0L7R076   A0A2J7RHV3   D7EHT3   E2AKR8   A0A195E2W3   A0A3L8DSW3   A0A067RRB7   E2BNZ5   A0A1W4XJQ1   A0A023F2M3   T1I6V4   A0A2A3EK44   U5ENF5   B3P4K1   B0W8H3   A0A182GE30   E2QCZ0   A0A1Q3FV74   Q24546-3   B4JIL5   E2QCY9   Q5TNR4   A0A3B0K075   A0A0P6B7D4   Q24546   B4NFF4   A0A1A9Y8Y1   A0A1A9V922   A0A1A9ZRQ9   A0A1B0BMG1   A0A2S2R321  

Pubmed

19121390    28756777    26354079    22118469    26227816    21347285    + More
18362917    19820115    20798317    30249741    24845553    25474469    17994087    26483478    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    8627354    15255973    18327897    29568072    12364791   

EMBL

BABH01013165    BABH01013166    BABH01013167    BABH01013168    KZ150009    PZC75111.1    + More
KQ459586    KPI97859.1    AGBW02011240    OWR46944.1    JTDY01005000    KOB67492.1    KQ460883    KPJ11425.1    KQ434943    KZC12286.1    ADTU01006617    ADTU01006618    KQ973114    KXZ75661.1    KQ414672    KOC64255.1    NEVH01003737    PNF40415.1    DS497665    EFA12118.1    GL440378    EFN65978.1    KQ979709    KYN19421.1    QOIP01000004    RLU23471.1    KK852511    KDR22299.1    GL449511    EFN82587.1    GBBI01003336    JAC15376.1    ACPB03000880    KZ288231    PBC31566.1    GANO01004128    JAB55743.1    CH954181    EDV49654.1    DS231859    EDS39023.1    JXUM01057246    JXUM01057247    JXUM01057248    KQ561946    KXJ77083.1    AE014297    AAN13463.2    GFDL01003590    JAV31455.1    X95453    X95454    CH916369    EDV93096.1    AAF54506.3    AAAB01008982    EAL39109.4    OUUW01000013    SPP87717.1    GDIP01019128    JAM84587.1    CH964251    EDW83021.2    JXJN01016890    JXJN01016891    GGMS01015244    MBY84447.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000037510    UP000053240    UP000076502    + More
UP000005205    UP000007266    UP000053825    UP000235965    UP000000311    UP000078492    UP000279307    UP000027135    UP000008237    UP000192223    UP000015103    UP000242457    UP000008711    UP000002320    UP000069940    UP000249989    UP000000803    UP000001070    UP000007062    UP000268350    UP000007798    UP000092443    UP000078200    UP000092445    UP000092460   

PRIDE

H9IST1    E2QCZ0    Q24546    E2QCY9   

Pfam

PF02750   Synapsin_C        + More
PF02078   Synapsin

Interpro

IPR001359   Synapsin        + More
IPR020897   Synapsin_pre-ATP-grasp_dom       
IPR020898   Synapsin_ATP-bd_dom       
IPR016185   PreATP-grasp_dom_sf       
IPR013815   ATP_grasp_subdomain_1       
IPR011761   ATP-grasp       

SUPFAM

SSF52440   SSF52440       

Gene 3D

3.30.1490.20    

ProteinModelPortal

H9IST1   A0A2W1BLF9   A0A194PYN3   A0A212EZS6   A0A0L7KW36   A0A194R2F0   + More
A0A154PKA5   A0A158P1M1   A0A139W8P6   A0A0L7R076   A0A2J7RHV3   D7EHT3   E2AKR8   A0A195E2W3   A0A3L8DSW3   A0A067RRB7   E2BNZ5   A0A1W4XJQ1   A0A023F2M3   T1I6V4   A0A2A3EK44   U5ENF5   B3P4K1   B0W8H3   A0A182GE30   E2QCZ0   A0A1Q3FV74   Q24546-3   B4JIL5   E2QCY9   Q5TNR4   A0A3B0K075   A0A0P6B7D4   Q24546   B4NFF4   A0A1A9Y8Y1   A0A1A9V922   A0A1A9ZRQ9   A0A1B0BMG1   A0A2S2R321  

PDB

1I7N     E-value=6.86046e-41,     Score=420

KEGG

101740156    K19941 synapsin | (RefSeq) synapsin

GO

GO:0007269   GO:0008021   GO:0005524   GO:0046872   GO:0030672   GO:0008306   GO:0008355   GO:0016079   GO:0009408   GO:0071632   GO:0008049   GO:0030054   GO:0043195   GO:0072553   GO:0051124   GO:0007613   GO:0048149   GO:0016020   GO:0019843   GO:0005515   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR10841  

Subcellular location

  

Length:

325

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

9.22014

Exp number, first 60 AAs:

9.19598

Total prob of N-in:

0.44172

outside

1  -  325

 

 

Pi

307.865287

Theta

193.519713

Tajima's D

1.948218

CLR

0.578757

CSRT

0.870456477176141

Interpretation

Uncertain