Gene

KWMTBOMO13080  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000305

Annotation

PREDICTED:_doublesex-_and_mab-3-related_transcription_factor_A2_[Bombyx_mori]

Location

Bomo_Chr22(+):8028365-8035788      View in EpiBrowser

Transcription factor

DM

Location in the cell

Nuclear   Reliability : 3.92

CDS

ATGTTGAACAACAGTGGTAGAGCTCGGGTGCCAAAATGTGCACGCTGTCGCAATCACGGGCTTATTTCAAGCTTACGGGGTCACAAAAAAGCATGTGCCTACCGTCACTGTCAATGTCCTAAATGTGGGCTAATTAAGGAAAGGCAACGAATCATGGCTGCACAGGTGGCATTAAAGAGACAACAGGCTGCCGAAGATAAAATAGCCCTACACTTGGCCTCAGTTGAGACCGGTACTCCTCTAGAAAGCTTGCCTCCAGGCCGCATCTATGGGATGAGAGTGACTGACCCCAGCCCTAGTCCTGGTCCGGAACCAGATTCAGCTGCTGATGATCAAATCCCGATTCATATAGACAGCGAAACCAGCGATTCTCTTCCAGACTGCAGCAATGTTTCACCCGATTCAGTAGGAAATTCCTCAGGGGTTTCCCAATTACGGTCAGGACAAGATGAGTCTACAGTTGAAGCTGAAGGCGCCGTGAGCACAGCGGGTCTGGAAATGTTACGCAAACTGTTTCCCGGGAAGAAGCGTTCGGTGTTGGAGCTAGTTTTACGCCGCTGCAACCACGATCTGCTACGTGCTGTTGAACATTTTAACGCAACACATGGTCGAGATAAAATTCCGGAGAGTACTACAGGATTAGGATTCGAAGCTTCTGTGTCAAGTTCTGAAGATCCAGAGTCTCGATGGTCAGCCTTCAGGCCGGTCAGTAGGCGTGCACCACTTCTCCCAGCTTTAGTGATGGGACGGGTTTACGGTTCAGAGTGGTTGGTTCCACTACCAGCTTTACCAACTTTGTCGACTCCGCTACTCCTACCGCTGCAGCATCAACACGTCCCACCAGCGTCCTGCAACCCTTGTGCGCCTGACTGCCGACAGTGCAATAATCATCATTAA

Protein

MLNNSGRARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAEDKIALHLASVETGTPLESLPPGRIYGMRVTDPSPSPGPEPDSAADDQIPIHIDSETSDSLPDCSNVSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKRSVLELVLRRCNHDLLRAVEHFNATHGRDKIPESTTGLGFEASVSSSEDPESRWSAFRPVSRRAPLLPALVMGRVYGSEWLVPLPALPTLSTPLLLPLQHQHVPPASCNPCAPDCRQCNNHH

Uniprot

H9ISS8   A0A2A4IX79   A0A3S2LI23   A0A2W1BQD4   A0A2H1V263   A0A194R1N3   + More
A0A212F4A0   A0A0L7LHM0   N6U4E6   A0A182VR83   A0A1J1HMI4   A0A182LXJ2   A0A182YGF1   A0A084WQU2   B4NH49   A0A026W1V3   A0A0M4EMW9   A0A151IG21   A0A182RNH9   B3M2W8   K7J6P7   A0A1W4VL24   Q293K3   A0A232EL58   A0A151I304   B4R152   B4IKL6   A0A336MLR8   A0A0J7KFR3   A0A151XGZ8   A0A0L7R0J6   B3P2Y8   A0A151K058   A0A1A9W9F3   Q9VDF1   A0A3B0KBB0   A0A1A9XSW9   A0A1B0BKM7   A0A1I8Q4E7   A0A1B0G9H1   A0A3Q0IY22   A0A2S0XSS7   A0A154PRQ0   A0A1I8MCC4   A0A3Q0J2G0   A0A1A9ZUK3   A0A1V9XS27   A0A183IDI7   A0A210PR58   A0A0K2THK4   A0A336M6F7  

Pubmed

19121390    28756777    26354079    22118469    26227816    23537049    + More
25244985    24438588    17994087    24508170    30249741    20075255    15632085    28648823    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    29660189    25315136    28327890    28812685   

EMBL

BABH01013177    NWSH01005657    PCG64076.1    RSAL01000111    RVE47102.1    KZ150009    + More
PZC75116.1    ODYU01000339    SOQ34921.1    KQ460883    KPJ11429.1    AGBW02010414    OWR48559.1    JTDY01001037    KOB75063.1    APGK01043502    KB741014    KB632293    ENN75496.1    ERL91616.1    CVRI01000011    CRK89263.1    AXCM01005253    AXCM01005254    ATLV01025738    KE525398    KFB52586.1    CH964272    EDW84546.1    KK107503    QOIP01000006    EZA49556.1    RLU21237.1    CP012526    ALC46865.1    KQ977743    KYN00164.1    CH902617    EDV43498.1    CM000070    EAL29212.1    NNAY01003649    OXU19052.1    KQ976535    KYM81463.1    CM000364    EDX12139.1    CH480853    EDW51620.1    UFQT01001314    SSX29979.1    LBMM01008142    KMQ89112.1    KQ982138    KYQ59679.1    KQ414670    KOC64375.1    CH954181    EDV48302.1    KQ981301    KYN43047.1    AE014297    AAF55843.1    OUUW01000007    SPP83399.1    JXJN01015979    CCAG010006628    CCAG010006629    MH232030    AWC26119.1    KQ435090    KZC14582.1    MNPL01005032    OQR76285.1    UZAM01006910    VDO95127.1    NEDP02005550    OWF38975.1    HACA01007625    CDW24986.1    UFQS01000625    UFQT01000625    SSX05513.1    SSX25872.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000007151    UP000037510    + More
UP000019118    UP000030742    UP000075920    UP000183832    UP000075883    UP000076408    UP000030765    UP000007798    UP000053097    UP000279307    UP000092553    UP000078542    UP000075900    UP000007801    UP000002358    UP000192221    UP000001819    UP000215335    UP000078540    UP000000304    UP000001292    UP000036403    UP000075809    UP000053825    UP000008711    UP000078541    UP000091820    UP000000803    UP000268350    UP000092443    UP000092460    UP000095300    UP000092444    UP000079169    UP000076502    UP000095301    UP000092445    UP000192247    UP000050793    UP000242188   

PRIDE

H9ISS8    Q9VDF1   

Pfam

PF00751   DM        + More
PF03474   DMA
PF00046   Homeodomain

Interpro

IPR036407   DM_DNA-bd_sf        + More
IPR001275   DM_DNA-bd       
IPR005173   DMA       
IPR029069   HotDog_dom_sf       
IPR026607   DMRT/dsx/mab-3       
IPR009060   UBA-like_sf       
IPR017970   Homeobox_CS       
IPR001356   Homeobox_dom       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF82927   SSF82927        + More
SSF54637   SSF54637       
SSF46934   SSF46934       
SSF46689   SSF46689       

Gene 3D

4.10.1040.10    

CDD

cd00086  homeodomain

ProteinModelPortal

H9ISS8   A0A2A4IX79   A0A3S2LI23   A0A2W1BQD4   A0A2H1V263   A0A194R1N3   + More
A0A212F4A0   A0A0L7LHM0   N6U4E6   A0A182VR83   A0A1J1HMI4   A0A182LXJ2   A0A182YGF1   A0A084WQU2   B4NH49   A0A026W1V3   A0A0M4EMW9   A0A151IG21   A0A182RNH9   B3M2W8   K7J6P7   A0A1W4VL24   Q293K3   A0A232EL58   A0A151I304   B4R152   B4IKL6   A0A336MLR8   A0A0J7KFR3   A0A151XGZ8   A0A0L7R0J6   B3P2Y8   A0A151K058   A0A1A9W9F3   Q9VDF1   A0A3B0KBB0   A0A1A9XSW9   A0A1B0BKM7   A0A1I8Q4E7   A0A1B0G9H1   A0A3Q0IY22   A0A2S0XSS7   A0A154PRQ0   A0A1I8MCC4   A0A3Q0J2G0   A0A1A9ZUK3   A0A1V9XS27   A0A183IDI7   A0A210PR58   A0A0K2THK4   A0A336M6F7  

PDB

4YJ0     E-value=4.1208e-17,     Score=214

KEGG

101740696    no KO assigned | (RefSeq) doublesex- and mab-3-related transcription factor A2

GO

GO:0006355   GO:0043565   GO:0046872   GO:0005634   GO:0003700   GO:0003677   GO:0016021   GO:0001228   GO:0000977   GO:0006357   GO:0005515   GO:0016020   GO:0019843   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR12322  

Subcellular location

Nucleus  

Length:

298

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03555

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06157

outside

1  -  298

 

 

Pi

251.740525

Theta

186.533

Tajima's D

1.217329

CLR

0.001061

CSRT

0.717414129293535

Interpretation

Uncertain