Gene

KWMTBOMO13074

Pre Gene Modal

BGIBMGA000395

Annotation

ribosomal_protein_L37_[Bombyx_mori]

Location

Bomo_Chr22(-):7963772-7965583      View in EpiBrowser

Full name

Ribosomal protein L37       + More
60S ribosomal protein L37      
Probable 60S ribosomal protein L37-A      

Location in the cell

Nuclear   Reliability : 3.086

CDS

ATGACGAAGGGTACCTCAAGCTTCGGTAAGCGCCGAAATAAGACCCATACGTTATGCAGAAGATGTGGTAGATCGTCATATCACATTCAAAAATCAAAATGCGCCCAATGTGGATATCCTGCAGCAAAATTACGATCCTACCACTGGTCAGTGAAGGCTAAGCGCAGGAAGACTACTGGAACTGGCCGCATGCGTCATTTGAAGATTGTCAGGAGGCGCTTCCGTAATGGTTTTAAAGAAGGGAAACCAACGCCGCCCAAGAAGGCTGTAGCTTCGTCATGA

Protein

MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEGKPTPPKKAVASS

Description

Binds to the 23S rRNA.

Cofactor

Zn(2+)

Similarity

Belongs to the eukaryotic ribosomal protein eL37 family.

Keywords

Metal-binding   Ribonucleoprotein   Ribosomal protein   RNA-binding   rRNA-binding   Zinc   Zinc-finger   3D-structure   Complete proteome   Reference proteome  

Feature

chain  60S ribosomal protein L37

Uniprot

Q5UAQ0   A0A2W1BJ74   I4DMC3   A0A3S2NS36   G0ZEE9   I4DIW5   + More
D1LYJ2   Q962S7   A0A212F4A3   E7DZ31   A0A194R0W5   Q6F468   A0A1E1WNC5   A0A194Q361   A0A0L7JP00   E3UUW3   M9PH59   Q9VXX8   B4PWB0   B4IJA2   B3NUU7   A0A0X7YJJ6   A0A1I8N2N8   A0A1I8PXY1   A0A1L8EHI0   A2IAA1   B4N224   B3MR67   Q4GX96   A0A0R3P303   A0A3B0JA42   D6X1W6   A0A1W4VFQ0   Q6XI13   A0A0M4FAG9   A0A0L0C4L4   A0A1L8EAN3   Q5MGL7   A0A1W4XMS7   B4MAA7   A0A158N929   D1M810   B4JMK7   A0A0C9QZ50   A0A0K8TR37   I3VPF9   A0A195C635   A0A1B0FIT5   D3TRY6   A0A1A9XRR8   A0A1B0APA6   A0A1B0ADV6   J3JZ97   B4L5B0   Q6Q9G1   A0A023EDX1   F4WM18   B8XY07   Q4GX94   A0A195FTV4   Q4GX95   A0A2P8XU36   A0A1S4EIV6   A0A1A9W8I2   A2I466   A0A195BC57   A0A034UX50   A0A1Q3FA07   U5EYX9   B0WQU6   E1ZYD2   A0A0C9RGU0   A0A0K8V9D5   A0A0A1XQS8   K7J6V9   A0A182H154   U5EVS6   A0A0P6IY87   A0A0A9Z4H7   Q56FL6   R4WMQ5   A0A195DCL1   A0A0P4VTI0   A6YPK3   A0A1D1XL80   A0A087ZP25   A0A2M3ZFD0   A0A2M3ZYV9   A0A1Y9G9P5   W5JD85   A0A067RKX4   A0A069DNM4   A0A1B0DR19   A0A224Y3M1   E0VAX4   A0A026WGG3   A0A1J1HYB7   A0A2A3ENK1   A0A0V0G343   J9JL45  

Pubmed

28756777    22651552    14668217    22118469    26354079    26227816    + More
10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    23636399    17994087    17550304    25315136    17437641    15632085    18362917    19820115    14525923    26108605    16023793    21347285    26369729    23049752    20353571    22516182    23537049    17510324    24945155    26483478    21719571    29403074    25348373    20798317    25830018    20075255    25401762    23691247    27129103    18207082    20920257    23761445    24845553    26334808    20566863    24508170    30249741   

EMBL

AY769308    AAV34850.1    KZ150009    PZC75122.1    AK402441    BAM19063.1    + More
RSAL01000111    RVE47110.1    JF265027    AEL28858.1    AK401233    BAM17855.1    GU084266    ACY95299.1    AF400199    AGBW02010414    OWR48552.1    HQ424734    ADT80678.1    KQ460883    KPJ11438.1    AB180422    BAD26666.1    GDQN01002606    JAT88448.1    KQ459586    KPI97845.1    JTDY01022846    KOB47301.1    HM590403    ADP21472.1    AE014298    KX531893    AGB95403.1    ANY27703.1    BT031045    CM000162    EDX01741.1    CH480847    EDW51081.1    CH954180    EDV47045.1    KC507362    AHB12485.1    GFDG01000685    JAV18114.1    EF179415    ABM55421.1    CH963925    EDW78413.1    CH902622    EDV34272.2    AM049127    CAJ17427.1    CH379063    KRT05941.1    OUUW01000003    SPP78825.1    KQ971371    EFA10173.2    AY231733    AY232019    AAR10042.1    CP012528    ALC49762.1    JRES01000926    KNC27230.1    GFDG01003085    JAV15714.1    AY829769    AAV91383.1    CH940655    EDW66166.2    ADTU01001365    ADTU01001366    GU120434    ACY71284.1    CH916371    EDV91950.1    GBYB01001000    JAG70767.1    GDAI01001213    JAI16390.1    JW050241    AFK82398.1    KQ978220    KYM96324.1    CCAG010006519    EZ424188    ADD20464.1    JXJN01001290    APGK01038495    BT128578    KB740960    KB631698    AEE63535.1    ENN76981.1    ERL85477.1    CH933811    EDW06369.2    AY552059    CH477291    AAS79345.1    EJY57510.1    JXUM01078411    GAPW01006617    KQ563065    JAC06981.1    KXJ74543.1    GL888217    EGI64662.1    FJ458408    ACL37990.1    AM049129    CAJ17429.1    KQ981264    KYN44050.1    AM049128    CAJ17428.1    PYGN01001360    PSN35414.1    EF070569    ABM55635.1    KQ976519    KYM82133.1    GAKP01023407    JAC35551.1    GFDL01010707    JAV24338.1    GANO01001747    JAB58124.1    DS232046    EDS33026.1    GL435204    EFN73831.1    GBYB01012377    JAG82144.1    GDHF01016818    JAI35496.1    GBXI01000926    JAD13366.1    AAZX01001296    JXUM01022883    KQ560644    KXJ81466.1    GANO01001745    JAB58126.1    GDIQ01002618    JAN92119.1    GBHO01006899    JAG36705.1    AY961484    AAX62386.1    AK416921    BAN20136.1    KQ980989    KYN10623.1    GDKW01000680    JAI55915.1    EF639014    ABR27899.1    GDJX01024816    JAT43120.1    GGFM01006379    MBW27130.1    GGFK01000425    MBW33746.1    ADMH02001866    ETN60779.1    KK852617    KDR20172.1    GBGD01003628    JAC85261.1    AJVK01019561    GFTR01001163    JAW15263.1    DS235019    EEB10530.1    KK107238    QOIP01000007    EZA54786.1    RLU20536.1    CVRI01000020    CRK91129.1    KZ288204    PBC33297.1    GECL01003617    JAP02507.1    ABLF02040109   

Proteomes

UP000283053    UP000007151    UP000053240    UP000053268    UP000037510    UP000000803    + More
UP000002282    UP000001292    UP000008711    UP000095301    UP000095300    UP000007798    UP000007801    UP000001819    UP000268350    UP000007266    UP000192221    UP000092553    UP000037069    UP000192223    UP000008792    UP000005205    UP000001070    UP000078542    UP000092444    UP000092443    UP000092460    UP000092445    UP000019118    UP000030742    UP000009192    UP000008820    UP000069940    UP000249989    UP000007755    UP000078541    UP000245037    UP000079169    UP000091820    UP000078540    UP000002320    UP000000311    UP000002358    UP000078492    UP000005203    UP000069272    UP000000673    UP000027135    UP000092462    UP000009046    UP000053097    UP000279307    UP000183832    UP000242457    UP000007819   

PRIDE

Q5UAQ0    M9PH59    Q9VXX8   

Pfam

PF01907   Ribosomal_L37e        + More
PF00132   Hexapep
PF00483   NTP_transferase

Interpro

IPR001569   Ribosomal_L37e        + More
IPR011332   Ribosomal_zn-bd       
IPR018267   Ribosomal_L37e_CS       
IPR011331   Ribosomal_L37ae/L37e       
IPR021127   CRISPR_associated_Cas2       
IPR029044   Nucleotide-diphossugar_trans       
IPR001451   Hexapep       
IPR005835   NTP_transferase_dom       

SUPFAM

SSF57829   SSF57829        + More
SSF53448   SSF53448       

Gene 3D

2.20.25.30     3.90.550.10    

CDD

cd09725  Cas2_I_II_III

ProteinModelPortal

Q5UAQ0   A0A2W1BJ74   I4DMC3   A0A3S2NS36   G0ZEE9   I4DIW5   + More
D1LYJ2   Q962S7   A0A212F4A3   E7DZ31   A0A194R0W5   Q6F468   A0A1E1WNC5   A0A194Q361   A0A0L7JP00   E3UUW3   M9PH59   Q9VXX8   B4PWB0   B4IJA2   B3NUU7   A0A0X7YJJ6   A0A1I8N2N8   A0A1I8PXY1   A0A1L8EHI0   A2IAA1   B4N224   B3MR67   Q4GX96   A0A0R3P303   A0A3B0JA42   D6X1W6   A0A1W4VFQ0   Q6XI13   A0A0M4FAG9   A0A0L0C4L4   A0A1L8EAN3   Q5MGL7   A0A1W4XMS7   B4MAA7   A0A158N929   D1M810   B4JMK7   A0A0C9QZ50   A0A0K8TR37   I3VPF9   A0A195C635   A0A1B0FIT5   D3TRY6   A0A1A9XRR8   A0A1B0APA6   A0A1B0ADV6   J3JZ97   B4L5B0   Q6Q9G1   A0A023EDX1   F4WM18   B8XY07   Q4GX94   A0A195FTV4   Q4GX95   A0A2P8XU36   A0A1S4EIV6   A0A1A9W8I2   A2I466   A0A195BC57   A0A034UX50   A0A1Q3FA07   U5EYX9   B0WQU6   E1ZYD2   A0A0C9RGU0   A0A0K8V9D5   A0A0A1XQS8   K7J6V9   A0A182H154   U5EVS6   A0A0P6IY87   A0A0A9Z4H7   Q56FL6   R4WMQ5   A0A195DCL1   A0A0P4VTI0   A6YPK3   A0A1D1XL80   A0A087ZP25   A0A2M3ZFD0   A0A2M3ZYV9   A0A1Y9G9P5   W5JD85   A0A067RKX4   A0A069DNM4   A0A1B0DR19   A0A224Y3M1   E0VAX4   A0A026WGG3   A0A1J1HYB7   A0A2A3ENK1   A0A0V0G343   J9JL45  

PDB

4V6W     E-value=8.92354e-24,     Score=266

KEGG

692709    K02922 large subunit ribosomal protein L37e | (RefSeq) RpL37; ribosomal protein L37

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0019843   GO:0046872   GO:0003735   GO:0006412   GO:0002181   GO:0022625   GO:0003743   GO:0016779   GO:0005622   GO:0005515   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

Length:

93

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.30625

outside

1  -  93

 

 

Pi

360.48252

Theta

240.630479

Tajima's D

1.615633

CLR

0

CSRT

0.812259387030648

Interpretation

Uncertain