Gene

KWMTBOMO13067  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000300

Annotation

PREDICTED:_eIF2B-gamma_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr22(+):7870294-7873842      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.165 Nuclear   Reliability : 1.23

CDS

ATGCATAAAATCTTAGAATTCCAAGTTGTCGTGTTGGCCGCTGGAAAAGGTTCCCGTATGCCAGATGTCGGAGGATCAGTTTCGAAATGTCTCCTACCTGTTGGGCCGTACCCAGTACTATGGTATCCATTAAATATGCTAGAAAAAATTGGATTTCAAGATGTAATGATTGTGGTACTTGATGAAGATAAGTCTAACATTCTTAATGCACTAGAAAAATGTCCCTTGAAAATAAAATATGAGTTAATTGTAATTCCATCAGAAGAAGACTGGGGTACAGCAAATTCCTTAAAGCATGTTAGTGCTAGAATCAATACAGATTTACTAGTCATATCAGGAGACCTCATTACTAACATAAACCTCAATGATGTACTGAACCTACACAGGAAACATGATGCATGTGTCACCACCTTGTTCTTCAATAATGGTCCTGAAGAGTGGATTGAATTACCGGGACCGAAAACTAAATCCAAACCTGATCGAGACTTAGTTTGTATAGATAAAGAGACTGAGAGACTTGTTTTTCTGGCAAGTGCTAGTGATTTTGAAGAGAATGTGACAATACCAAGATTACTTGTGAAAAAATATGATGCTTTGAGCATATATAGTAGATTATTGGATGCACATGTATATGTAATGAAACACTGGATTTTAGACTATATTGTAGATTCCGAAAAATTTACCTCGATTAAAGGTGAGGTTGTTCCTTACATTGTTAAAAAGCAATTAACGAAACCTAACAACTTAGTGGAAAAGAAGGGCACCTCGGAAAAGAATGCAGAAATTAATAAAGGAATTTTTGACTATGCAATAGAGACAGGTTATGAGCGTAAGATAAGAGAAATATCAGCATACAATGATCATAAGCATGGTAACAAAGGGGTGTACTTTAATGATACTCTTAGATGTTATGCACATATTCCTAGTAAAAATACATTTGCAATTCGTGTTAATACACTATCATCATTTTATCTATCCAACAATAAGATATTATCAAAATGGCAAGATCTTACTGGATCATCTCTGTTTGAAAGATTTCACCCTAACAGTGAGGTGAAAACAAAACAGATTGATGATAATTGCACTGTTGGAGAGAAAACTATTATTAATGAAAAAACATCAGTAAAAAATTCATTTATTGGCTCAAATTGTAATATAGAAAACAAAGTCAGACTAACAAATTGTATACTCATGAACAATGTGACCATCAAAGAAAGCTGTGTTCTACAAGATTGTGTTGTCTATACCGGAGCGACAGTAGGCACCAATTGTTCAATGCAATACTGTCTTATAGGACCTCACCATTTGGTTCCGGAATCAACTAAGAGCAACCATCAACTGCATGCAGAAACTACAGATAACATGATAACGCTTGGATAA

Protein

MHKILEFQVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTDLLVISGDLITNINLNDVLNLHRKHDACVTTLFFNNGPEEWIELPGPKTKSKPDRDLVCIDKETERLVFLASASDFEENVTIPRLLVKKYDALSIYSRLLDAHVYVMKHWILDYIVDSEKFTSIKGEVVPYIVKKQLTKPNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDHKHGNKGVYFNDTLRCYAHIPSKNTFAIRVNTLSSFYLSNNKILSKWQDLTGSSLFERFHPNSEVKTKQIDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVRLTNCILMNNVTIKESCVLQDCVVYTGATVGTNCSMQYCLIGPHHLVPESTKSNHQLHAETTDNMITLG

Uniprot

Q0ZB79   H9ISS3   A0A2H1V500   A0A2A4IRW3   A0A2W1BJB3   A0A212FL00   + More
S4PGV6   A0A194PXT4   A0A0L7L0U1   A0A3S2LD78   A0A194R6F4   A0A2J7RLQ5   D6X364   A0A1Y1KB30   A0A0T6B4Q4   A0A110A0M4   K7J6V8   A0A232EL02   A0A158N918   A0A1B6GVP3   U5EY76   A0A336L7M7   A0A026WT39   A0A1B6K928   A0A195BD61   F4WM19   A0A195C858   E1ZYD1   A0A154PC11   A0A2P8XSN7   A0A336MTR2   A0A195DCQ8   A0A034WEA6   A0A0A1XII4   E2B3K2   A0A3F2Z4N7   A0A0L7RAT8   A0A0V0G9L2   A0A195FW32   A0A1A9YGE4   T1PIV6   A0A1A9V2T3   A0A1I8M3S0   A0A151XA03   A0A023F973   W8AVS7   A0A1B0AAW1   A0A310SE37   A0A0A9WNQ6   A0A182JKQ4   A0A0K8TF09   A0A0M8ZXW6   A0A0C9QN18   A0A1I8PHZ5   A0A0L0C304   A0A087ZP24   E9IVG4   A0A182WK28   R4G4U7   A0A0P4VSI6   A0A1A9W9Q5   A0A182TID6   A0A182XEV9   Q7Q9J1   A0A182HNY4   A0A182YC45   A0A182P8S0   A0A182VFY9   A0A182T4G4   A0A182RKV4   A0A0K8TSE1   Q28YM8   A0A1S3JL74   A0A182GGI8   A0A182M0N2   A0A0M3QV05   B3MHH7   A0A3B0J7B1   A0A1W4WBD6   W5J742   A0A2M4AN52   Q16Q28   A0A1L8DSE4   A0A1B0G0E6   A0A2M4BNP6   A0A2M4AP68   A0A1S4FTP5   A0A2M3Z9U4   B4P7B9   B3NQB6   A0A182Q0A2   B4HS55   B4QGW1   A0A2M3ZII9   Q8MPP2   B4NMT4   A0A0P5F9R5   E9HCA4   A0A0P5KDV8   A0A182FCY3  

Pubmed

19121390    28756777    22118469    23622113    26354079    26227816    + More
18362917    19820115    28004739    20075255    28648823    21347285    24508170    30249741    21719571    20798317    29403074    25348373    25830018    25315136    25474469    24495485    25401762    26823975    26108605    21282665    27129103    12364791    14747013    17210077    25244985    26369729    15632085    17994087    26483478    20920257    23761445    17510324    17550304    22936249    21292972   

EMBL

DQ645457    ABG54285.1    BABH01013191    ODYU01000702    SOQ35913.1    NWSH01008538    + More
PCG62515.1    KZ150009    PZC75129.1    AGBW02007934    OWR54412.1    GAIX01003482    JAA89078.1    KQ459586    KPI97838.1    JTDY01003768    KOB69035.1    RSAL01000037    RVE51153.1    KQ460883    KPJ11446.1    NEVH01002684    PNF41772.1    KQ971372    EFA10335.1    GEZM01087386    JAV58722.1    LJIG01009855    KRT82246.1    KT768112    AMH84307.1    AAZX01001296    NNAY01003671    OXU19025.1    ADTU01001365    GECZ01003255    JAS66514.1    GANO01000538    JAB59333.1    UFQS01002342    UFQT01002342    SSX13818.1    SSX33239.1    KK107109    QOIP01000008    EZA59177.1    RLU19621.1    GEBQ01032037    JAT07940.1    KQ976519    KYM82134.1    GL888217    EGI64663.1    KQ978220    KYM96323.1    GL435204    EFN73830.1    KQ434857    KZC08808.1    PYGN01001413    PSN35021.1    UFQT01002518    SSX33616.1    KQ980989    KYN10622.1    GAKP01006844    JAC52108.1    GBXI01003093    JAD11199.1    GL445346    EFN89754.1    JXJN01005906    KQ414618    KOC67940.1    GECL01001403    JAP04721.1    KQ981264    KYN44049.1    KA648045    AFP62674.1    KQ982353    KYQ57183.1    GBBI01001254    JAC17458.1    GAMC01021669    JAB84886.1    KQ762329    OAD55945.1    GBHO01034543    GDHC01010778    JAG09061.1    JAQ07851.1    GBRD01001663    JAG64158.1    KQ435798    KOX73345.1    GBYB01004959    JAG74726.1    JRES01000975    KNC26622.1    GL766234    EFZ15436.1    ACPB03020046    GAHY01000446    JAA77064.1    GDKW01000494    JAI56101.1    AAAB01008900    EAA09498.3    APCN01002812    GDAI01000547    JAI17056.1    CM000071    EAL25937.2    JXUM01061825    KQ562170    KXJ76516.1    AXCM01001014    CP012524    ALC41543.1    CH902619    EDV37977.1    OUUW01000001    SPP75782.1    ADMH02002097    ETN59213.1    GGFK01008892    MBW42213.1    CH477765    EAT36481.1    GFDF01004763    JAV09321.1    CCAG010016559    GGFJ01005257    MBW54398.1    GGFK01009263    MBW42584.1    GGFM01004556    MBW25307.1    CM000158    EDW92064.1    CH954179    EDV55892.1    AXCN02001020    CH480816    EDW48002.1    CM000362    CM002911    EDX07224.1    KMY94012.1    GGFM01007590    MBW28341.1    AJ344148    CAC82993.1    CH964282    EDW85673.1    GDIP01207936    GDIP01150103    GDIQ01242842    GDIQ01170373    GDIQ01168567    GDIQ01166534    GDIQ01115145    GDIQ01067811    GDIQ01067810    LRGB01001569    JAJ73299.1    JAK08883.1    KZS11757.1    GL732619    EFX70645.1    GDIQ01191999    JAK59726.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000037510    UP000283053    + More
UP000053240    UP000235965    UP000007266    UP000002358    UP000215335    UP000005205    UP000053097    UP000279307    UP000078540    UP000007755    UP000078542    UP000000311    UP000076502    UP000245037    UP000078492    UP000008237    UP000092460    UP000053825    UP000078541    UP000092443    UP000078200    UP000095301    UP000075809    UP000092445    UP000075880    UP000053105    UP000095300    UP000037069    UP000005203    UP000075920    UP000015103    UP000091820    UP000075902    UP000076407    UP000007062    UP000075840    UP000076408    UP000075885    UP000075903    UP000075901    UP000075900    UP000001819    UP000085678    UP000069940    UP000249989    UP000075883    UP000092553    UP000007801    UP000268350    UP000192221    UP000000673    UP000008820    UP000092444    UP000002282    UP000008711    UP000075886    UP000001292    UP000000304    UP000007798    UP000076858    UP000000305    UP000069272   

PRIDE

Q0ZB79    H9ISS3    Q8MPP2   

Pfam

PF12804   NTP_transf_3        + More
PF00132   Hexapep
PF00483   NTP_transferase

Interpro

IPR025877   MobA-like_NTP_Trfase        + More
IPR029044   Nucleotide-diphossugar_trans       
IPR001451   Hexapep       
IPR005835   NTP_transferase_dom       
IPR011004   Trimer_LpxA-like_sf       
IPR036915   Cyclin-like_sf       

SUPFAM

SSF53448   SSF53448        + More
SSF51161   SSF51161       
SSF47954   SSF47954       

Gene 3D

3.90.550.10    

ProteinModelPortal

Q0ZB79   H9ISS3   A0A2H1V500   A0A2A4IRW3   A0A2W1BJB3   A0A212FL00   + More
S4PGV6   A0A194PXT4   A0A0L7L0U1   A0A3S2LD78   A0A194R6F4   A0A2J7RLQ5   D6X364   A0A1Y1KB30   A0A0T6B4Q4   A0A110A0M4   K7J6V8   A0A232EL02   A0A158N918   A0A1B6GVP3   U5EY76   A0A336L7M7   A0A026WT39   A0A1B6K928   A0A195BD61   F4WM19   A0A195C858   E1ZYD1   A0A154PC11   A0A2P8XSN7   A0A336MTR2   A0A195DCQ8   A0A034WEA6   A0A0A1XII4   E2B3K2   A0A3F2Z4N7   A0A0L7RAT8   A0A0V0G9L2   A0A195FW32   A0A1A9YGE4   T1PIV6   A0A1A9V2T3   A0A1I8M3S0   A0A151XA03   A0A023F973   W8AVS7   A0A1B0AAW1   A0A310SE37   A0A0A9WNQ6   A0A182JKQ4   A0A0K8TF09   A0A0M8ZXW6   A0A0C9QN18   A0A1I8PHZ5   A0A0L0C304   A0A087ZP24   E9IVG4   A0A182WK28   R4G4U7   A0A0P4VSI6   A0A1A9W9Q5   A0A182TID6   A0A182XEV9   Q7Q9J1   A0A182HNY4   A0A182YC45   A0A182P8S0   A0A182VFY9   A0A182T4G4   A0A182RKV4   A0A0K8TSE1   Q28YM8   A0A1S3JL74   A0A182GGI8   A0A182M0N2   A0A0M3QV05   B3MHH7   A0A3B0J7B1   A0A1W4WBD6   W5J742   A0A2M4AN52   Q16Q28   A0A1L8DSE4   A0A1B0G0E6   A0A2M4BNP6   A0A2M4AP68   A0A1S4FTP5   A0A2M3Z9U4   B4P7B9   B3NQB6   A0A182Q0A2   B4HS55   B4QGW1   A0A2M3ZII9   Q8MPP2   B4NMT4   A0A0P5F9R5   E9HCA4   A0A0P5KDV8   A0A182FCY3  

PDB

6O9Z     E-value=3.13127e-66,     Score=640

KEGG

733084    K03241 translation initiation factor eIF-2B subunit gamma | (RefSeq) eIF2B-gamma protein

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0003743   GO:0016779   GO:0009058   GO:0071456   GO:0005829   GO:0005851   GO:0006413  

Length:

459

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0733199999999999

Exp number, first 60 AAs:

0.07123

Total prob of N-in:

0.00556

outside

1  -  459

 

 

Pi

282.672938

Theta

182.666779

Tajima's D

1.493401

CLR

0.204316

CSRT

0.787710614469276

Interpretation

Uncertain