Gene

KWMTBOMO13059

Annotation

PREDICTED:_mucin-2-like_[Amyelois_transitella]

Location

Bomo_Chr22(-):7526150-7529289      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.384

CDS

ATGTCGTCAGGTAGTTATTTATTAAATGTGCCGAAATTAAAAGGACGCGAAAATTATGACGATTGGGCATTCGCAGCAAGAAACTTTCTTATCTTGGAAGGCATAGACATGGACGCCATTCCGGTTGATTTGAGTCATGCCGAAGACCGAAAAGCGAAGGCAAAACTCGTCATGACCATCGATCCCAAGCTATATGTGCACATCAAAAATGAAACCAAAGTCAAGGATTTGTGGCAGAAACTACAAAAGTTATTCGATGACAGCGGGTTCACAAGAAAAATCAGCCTACTTCGAACACTGATGTCCATTCGACTTGATAATTGTGAATCCATGACAAGTTACGTAAGTCAGATAGTGGAAACTGCACAAAGACTAAAAGGTACAGGGTTTGAAATTAATGAGGAATGGATCGGATCATTGCTGTTGGCGGGGCTGCCAGAAAAGTTTGCCCCGATGATTATGGCAATAGAACATTCCGGAATTGCCATAAATTCTGATGTCATAAAAACCAAATTGCTTGATATGAGTTCTGAGCTTATTGGAATAGCAAATCTACAAAATGGTGTGTATAAGTTGAATACAGTAAGATCAGAGAAAGTGTTGGCGGCAGCAGTTCAGACTACAGATACAAAAAAGTGGCACAGAAGATTGGGACACATTAATTGTAATGATTTGCAGAAGATGAAAAATGGTGCTGTAGACGGAATATCGTTTGATATGAAGGCTAATATAAAAAAATCCAACTGTCAAGTATGTTGTGAAGGGAAACAGAGTCGTTTACCGTTCCAATTACGAAACCATAGAAGTACAGAATCGCTAGATTTAGTTCACTCAGATCTGTGTGGGCCTATGGAGGTTCGATCGATTGGACAGGCAAGATATTTTCTATTGTTTGTTGACGATGCTAGCAGGATGGCTTTTGTATATTTTATAAAGGAGAAGAATCAGACTCTACAGCTTTTCAAGGAATTTCAAAAAATGGTTGAGAATCAAAAAGGAACAAAGATAAAAACATTGAGAACCGACAATGGAGGGGAGTTTTCTTCAGATATGATGGAAAATTATCTGATAGATAGTGGAATTATCCATCAGAAGACGAACCCATATACTCCGGAGCAGAATGGTCTCAGCGAACGTTTCAACAGGACTATAGTTGAACGTGCAAGATGTTTATTGTTCGAGGCCAAACTGGATAAAAGTTTTTGGGCAGAAGCAGTTAACACGGCAGTATACTTGAAAAATAGATCACCGGCTTCAGGTTTGGACCAAAAGACACCGATTGAAGTATGGACAGGACAAAAGCCTGATCTCAGTCATGTCAGAATATTTGGGAGCCCAGTAATGATGCATGTTCCTAAAAATAAAAGATTGAAATGGGACAAGAAAGCAGTTCAATTCATATTAGTGGGGTATCCAGAGAATGTGAAAGGCTACAGATTGTATAACTTAGAAACTAGAAAAATATGTACCAGCAGAGATGTCATTGTAATGGAAATAGAAATAAATGAAGGACAGATAGAAAAACAGCAGTCAGCACAAGAGGAAAGTTCTACTGAAGAAAGTGAAATAACATTGACAAATCAGGATGATCCCACTTATGTATATGATTCAGAAAAAAGTACAACTTCTACTGAAGGAGACTCTTATCAGACATTATTTGAAGAAGAAGAGCTATCTGAGAAAGAAGAGCCTCGATTGGTGGAAAAGCGTACCAGGAAACCTCCTGAAAGGTATGGTTTTACCAATCTTTGTATTTCAGATGAACCAGAGTCTTGGTTTGAAGACATAACTTATGATGAAGCTACCAACGGTCCAGAGAAAGACAAGTGGCAGCAGGCTATGTCTGATAAACTTCAAGCGTTTGAAGACAACCAAGCGTGGGAGATTTTTAAACAAGAGGAGACAGATAGAGCAGTACAGTGCAAATGGGTGTTCAAGAAAAAGTTAGAAAGCAATAACAGTGTTAGGTAA

Protein

MSSGSYLLNVPKLKGRENYDDWAFAARNFLILEGIDMDAIPVDLSHAEDRKAKAKLVMTIDPKLYVHIKNETKVKDLWQKLQKLFDDSGFTRKISLLRTLMSIRLDNCESMTSYVSQIVETAQRLKGTGFEINEEWIGSLLLAGLPEKFAPMIMAIEHSGIAINSDVIKTKLLDMSSELIGIANLQNGVYKLNTVRSEKVLAAAVQTTDTKKWHRRLGHINCNDLQKMKNGAVDGISFDMKANIKKSNCQVCCEGKQSRLPFQLRNHRSTESLDLVHSDLCGPMEVRSIGQARYFLLFVDDASRMAFVYFIKEKNQTLQLFKEFQKMVENQKGTKIKTLRTDNGGEFSSDMMENYLIDSGIIHQKTNPYTPEQNGLSERFNRTIVERARCLLFEAKLDKSFWAEAVNTAVYLKNRSPASGLDQKTPIEVWTGQKPDLSHVRIFGSPVMMHVPKNKRLKWDKKAVQFILVGYPENVKGYRLYNLETRKICTSRDVIVMEIEINEGQIEKQQSAQEESSTEESEITLTNQDDPTYVYDSEKSTTSTEGDSYQTLFEEEELSEKEEPRLVEKRTRKPPERYGFTNLCISDEPESWFEDITYDEATNGPEKDKWQQAMSDKLQAFEDNQAWEIFKQEETDRAVQCKWVFKKKLESNNSVR

Uniprot

V5GAG2   A0A1Y1NAZ7   A0A1Y1N668   A0A1Y1N664   A0A1Y1N932   A0A355BEE2   + More
A0A194RJV9   A0A0J7NHJ8   A0A1Y1LYU4   A0A2A4J959   A0A085NU43   A0A085MVP5   A0A0V1DH60   A0A0V1APU2   A0A0V1FKH2   A0A0V0T3I0   A0A0V1APS7   A0A0A9XY84   A0A0V1F2E6   A0A0V1K1Y9   A0A1Y3EBW8   A0A1W7R6J6   A0A1W7R6K6   A0A0V0YNF4   A0A0V0TUP0   A0A146LH62   A0A194RU38   A0A0V0Z6Q0   A0A1Y1LP39   A0A0V1NVX6   A0A2J7QD15   A0A0N1ICY1   A0A2J7Q1Z2   A0A0V0WR33   A0A2J7R668   A0A2J7RKJ6   A0A2J7R8S8   K7JC54   A0A0J7KG03   A0A0A9XBM0   A0A2J7R8R7   A0A0A1WXQ3   A0A0A9XVJ9   A0A0V1HT08   A0A2N9ETM3   A0A151R9Q4   A0A2N9IWX1   A0A034VP70   A0A0A9WPH5   A0A2N9EZ52   A0A2N9FXG4   A0A0A9WRE3   A0A0J7KAI5   A0A151RZS8   A0A2I0WB13   A0A2N9ELX4   A0A2N9GMG5   W8AQ86   A0A0J7KDE2   A0A2N9FSJ8   A0A2N9JB46   A0A0V0TGK3   A0A3L6PRB6   A0A2N9GQ16   A0A2N9FQJ1   A0A2N9EPJ3   A0A2N9H6B2   A0A2N9EM80   A0A2N9I8F7  

Pubmed

28004739    30148503    26354079    24929829    25401762    26823975    + More
20075255    25830018    22057054    25348373    26754549    28902843    24495485    30683860   

EMBL

GALX01001351    JAB67115.1    GEZM01011855    JAV93396.1    GEZM01011856    JAV93393.1    + More
GEZM01011859    JAV93384.1    GEZM01011857    JAV93390.1    DNYX01000353    HBK84078.1    KQ460297    KPJ16236.1    LBMM01004924    KMQ91985.1    GEZM01045163    GEZM01045162    JAV77888.1    NWSH01002292    PCG68657.1    PCG68658.1    KL367475    KFD72989.1    KL367628    KFD61291.1    JYDI01000006    KRY60323.1    JYDH01000330    KRY26801.1    JYDT01000069    KRY86576.1    JYDJ01000808    KRX33413.1    KRY26802.1    GBHO01019781    JAG23823.1    JYDR01000001    KRY80095.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    LVZM01021469    OUC41357.1    GEHC01000868    JAV46777.1    GEHC01000867    JAV46778.1    JYDU01000001    KRY01876.1    JYDJ01000136    KRX42725.1    GDHC01011760    JAQ06869.1    KQ459875    KPJ19636.1    JYDQ01000379    KRY07987.1    GEZM01050757    JAV75412.1    JYDM01000091    KRZ88014.1    NEVH01015832    PNF26467.1    KQ460882    KPJ11482.1    NEVH01019375    PNF22597.1    JYDK01000071    KRX78146.1    NEVH01006980    PNF36330.1    NEVH01002725    PNF41351.1    NEVH01006721    PNF37230.1    AAZX01015857    AAZX01019482    LBMM01008124    KMQ89126.1    GBHO01026200    JAG17404.1    PNF37231.1    GBXI01011094    JAD03198.1    GBHO01020706    JAG22898.1    JYDP01000032    KRZ13440.1    OIVN01000313    SPC78143.1    KQ483921    KYP39282.1    OIVN01006239    SPD28653.1    GAKP01015352    JAC43600.1    GBHO01033237    JAG10367.1    OIVN01000423    SPC79931.1    OIVN01001269    SPC91982.1    GBHO01033235    JAG10369.1    LBMM01010726    KMQ87289.1    KQ483510    KYP48029.1    KZ502801    PKU72844.1    OIVN01000172    SPC75650.1    OIVN01002444    SPD03657.1    GAMC01018338    JAB88217.1    LBMM01008998    KMQ88473.1    OIVN01001130    SPC90232.1    OIVN01006468    SPD33689.1    JYDJ01000298    KRX37703.1    PQIB02000016    RLM61347.1    OIVN01002547    SPD04547.1    OIVN01001052    SPC89229.1    OIVN01000469    SPC80756.1    OIVN01002904    SPD07378.1    OIVN01000189    SPC75922.1    OIVN01005068    SPD20708.1   

Proteomes

UP000053240    UP000036403    UP000218220    UP000054653    UP000054776    UP000054995    + More
UP000055048    UP000054632    UP000054805    UP000054826    UP000243006    UP000054815    UP000054783    UP000054924    UP000235965    UP000054673    UP000002358    UP000055024    UP000075243    UP000233837    UP000275267   

Pfam

PF00098   zf-CCHC        + More
PF00665   rve
PF07727   RVT_2
PF13976   gag_pre-integrs
PF13961   DUF4219
PF00931   NB-ARC
PF18052   Rx_N

Interpro

IPR001584   Integrase_cat-core        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR025314   DUF4219       
IPR002182   NB-ARC       
IPR027417   P-loop_NTPase       
IPR041118   Rx_N       

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098       
SSF52540   SSF52540       

Gene 3D

3.30.420.10    

ProteinModelPortal

V5GAG2   A0A1Y1NAZ7   A0A1Y1N668   A0A1Y1N664   A0A1Y1N932   A0A355BEE2   + More
A0A194RJV9   A0A0J7NHJ8   A0A1Y1LYU4   A0A2A4J959   A0A085NU43   A0A085MVP5   A0A0V1DH60   A0A0V1APU2   A0A0V1FKH2   A0A0V0T3I0   A0A0V1APS7   A0A0A9XY84   A0A0V1F2E6   A0A0V1K1Y9   A0A1Y3EBW8   A0A1W7R6J6   A0A1W7R6K6   A0A0V0YNF4   A0A0V0TUP0   A0A146LH62   A0A194RU38   A0A0V0Z6Q0   A0A1Y1LP39   A0A0V1NVX6   A0A2J7QD15   A0A0N1ICY1   A0A2J7Q1Z2   A0A0V0WR33   A0A2J7R668   A0A2J7RKJ6   A0A2J7R8S8   K7JC54   A0A0J7KG03   A0A0A9XBM0   A0A2J7R8R7   A0A0A1WXQ3   A0A0A9XVJ9   A0A0V1HT08   A0A2N9ETM3   A0A151R9Q4   A0A2N9IWX1   A0A034VP70   A0A0A9WPH5   A0A2N9EZ52   A0A2N9FXG4   A0A0A9WRE3   A0A0J7KAI5   A0A151RZS8   A0A2I0WB13   A0A2N9ELX4   A0A2N9GMG5   W8AQ86   A0A0J7KDE2   A0A2N9FSJ8   A0A2N9JB46   A0A0V0TGK3   A0A3L6PRB6   A0A2N9GQ16   A0A2N9FQJ1   A0A2N9EPJ3   A0A2N9H6B2   A0A2N9EM80   A0A2N9I8F7  

PDB

1C1A     E-value=0.00200887,     Score=100

KEGG

NA   

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0043531   GO:0006468   GO:0004683   GO:0005516   GO:0005515   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR11439  

Length:

656

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00256

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.00019

outside

1  -  656

 

 

Pi

200.16366

Theta

137.507546

Tajima's D

1.968482

CLR

0.532934

CSRT

0.875806209689516

Interpretation

Uncertain