Gene

KWMTBOMO13057

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr22(+):7490720-7492394      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.444

CDS

ATGCTGGAGCGGCAGTTCGCTCCGAATGACTCTGTATCCTCAGAGGCCGCATTCCACCAATCGGTGGAGGAGAGCGTAGCGAACCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGATGATTTCATCACTCCCAGCGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGTGAGGACGGTATTCCCTCCCTCGCATTCTTCCACTTCCCTGAAACGGTCGTGTCATACATGACACGGCTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTCATTGCCTTGCCCAAGCCCGGCAAGGATAGGAGAAATCCTTCCAGTTACCGTCCGATCACCTTGCTGTCGCATGTGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCTCAGCGGTCACTCGACAACGCTGCAATTGGTCCGAGTTATGCATCACTTGGCGGATCAGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGGTTCACAAGTTGTTGCGGAACACGGACCTCCAGCACGCCTACGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCTCAGGGGAGTGTCCTGGCACCACTCCTCTACGCTCTCTATACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCATCCAACTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTATTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATCCTCTTCGGTCCGGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAATCGGCGTTGGCGGCCGCTCGCTATGCGAGATTCCTCCTCCGGCCGGTGTTAGCCTCCGGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGGTCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGTAATGCCGTAATCGCCCGGGATCTGGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATTTAGCTCCCTTGCACGCCAGACCACCTGATGGTCGGGCGCTACCAAGGGAGCTACTAGAACCCCCTTCTATGGTAAGATAG

Protein

MLERQFAPNDSVSSEAAFHQSVEESVANLLSSPVPPLGDDDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHVGKLFERLLLRRVSPHILLRPEQFGFLSGHSTTLQLVRVMHHLADQSNARQYTAAVFLDIEKAFDRVWHAGLVHKLLRNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPLLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFASSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHAKSALAAARYARFLLRPVLASGLPVRTKLGIYKTYVRSRITYAAAAWYHLIPQVMRVKLQAQQNLALRTIVGAGRYVSNAVIARDLDVESLEEFIRRLARNLYERADGGPHEHLHNLAPLHARPPDGRALPRELLEPPSMVR

Uniprot

A0A3S2NJ07   A0A2A4JQF8   J9L876   X1XGU0   A0A2S2NJB5   A0A1Y1KUU7   + More
J9KPF1   A0A2S2RAN7   J9LF86   A0A087U2S8   X1WN18   J9KCZ4   X1WZH0   A0A2J7QEZ4   A0A2J7Q5G9   X1WNI2   J9LFC9   A0A2J7RB54   A0A2J7RIW7   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7PMP6   A0A2J7Q059   A0A2J7RS77   A0A2J7PMP9   J9LC21   X1WLB2   A0A2J7QUJ9   A0A2J7RPU2   A0A2J7QFL0   A0A2J7R2E1   A0A2S2PR14   A0A2J7Q0Q6   A0A2J7R6U1   A0A2J7RKP3   J9KKL3   A0A2J7Q1Y9   J9KEU4   A0A2J7QY69   A0A2J7PBY3   X1WMU5   A0A2J7PU96   V5GNJ2   A0A2J7PDS9   A0A2J7QR37   X1WWC4   A0A2A4K8E7   V5GNF3   A0A1Y1NA23   J9JS95   A0A2J7Q6J2   A0A182GA28   A0A2S2Q823   A0A2J7Q2R1   A0A2L2YNL2   A0A2A4K918   X1WQR0   A0A2J7RS81   A0A224XF24   X1X928   A0A1Y1LKN6   A0A2S2QTZ8   A0A0N0PA09   A0A2J7R4B1   A0A2J7R579   J9LF85   A0A2J7Q627   Q9XXW0   A0A2J7PQB5   A0A146LCK7   A0A0N1PFV1   A0A2J7RL12   A0A2J7QPI2   A0A087T1W0   A0A2S2PX53   A0A139W8G9   A0A139WA11   A0A2S2QJM7   A0A2J7R8R8   A0A087TMJ9   A0A0A9YJ00   Q9BPQ0   A0A0A9YU04   A0A023EZE6   A0A0A9YGU9   A0A2J7PDM0   A0A2J7RE85   A0A182GMD9   A0A087UCW3   A0A0A9Y7Q6   X1WXU3   A0A2H8TV33   A0A182GB02   A0A2J7PEB1   A0A2J7QTW2   A0A2J7R7D0   A0A2J7PVX3   A0A087SWJ5   A0A2P8Z520  

Pubmed

28004739    26483478    26561354    26354079    10333566    26823975    + More
18362917    19820115    25401762    25474469    29403074   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02033522    ABLF02055645    + More
GGMR01004661    MBY17280.1    GEZM01074951    JAV64378.1    ABLF02041767    GGMS01017914    MBY87117.1    ABLF02017815    KK117880    KFM71667.1    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02008463    ABLF02034467    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02023911    NEVH01005938    PNF38077.1    NEVH01003017    PNF40781.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023962    PNF17612.1    NEVH01020071    PNF21969.1    NEVH01000280    PNF43672.1    NEVH01023961    PNF17613.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02042518    ABLF02057746    NEVH01010546    PNF32261.1    NEVH01001355    PNF42855.1    NEVH01014858    PNF27387.1    NEVH01007838    PNF34986.1    GGMR01019198    MBY31817.1    NEVH01019964    PNF22161.1    NEVH01006754    PNF36554.1    NEVH01002716    PNF41415.1    ABLF02029306    ABLF02029314    ABLF02060138    NEVH01019376    PNF22596.1    ABLF02040650    ABLF02040651    ABLF02056776    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    ABLF02014862    ABLF02014866    ABLF02061908    NEVH01021205    PNF19912.1    GALX01005299    JAB63167.1    NEVH01026154    PNF14491.1    NEVH01011985    PNF31054.1    ABLF02003961    ABLF02059872    NWSH01000032    PCG80497.1    GALX01005359    JAB63107.1    GEZM01008457    JAV94772.1    ABLF02028535    ABLF02028545    NEVH01017470    PNF24199.1    JXUM01155316    KQ572171    KXJ68070.1    GGMS01004685    MBY73888.1    NEVH01019080    PNF22876.1    IAAA01035747    LAA09607.1    PCG80496.1    ABLF02050434    ABLF02064867    NEVH01000269    PNF43694.1    GFTR01008038    JAW08388.1    ABLF02066620    GEZM01053022    JAV74219.1    GGMS01012005    MBY81208.1    KQ459259    KPJ02068.1    NEVH01007578    PNF35646.1    NEVH01007393    PNF35987.1    ABLF02017813    NEVH01017542    PNF24034.1    AB018558    BAA76304.1    NEVH01022639    PNF18527.1    GDHC01014349    JAQ04280.1    KQ459265    KPJ02064.1    NEVH01002704    PNF41489.1    NEVH01012089    PNF30491.1    KK113014    KFM59099.1    GGMS01000737    MBY69940.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GGMS01008766    MBY77969.1    NEVH01006721    PNF37225.1    KK115908    KFM66338.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    AB055391    BAB21761.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GBBI01004571    JAC14141.1    GBHO01013276    JAG30328.1    NEVH01026386    PNF14434.1    NEVH01005277    PNF39135.1    JXUM01014072    KQ560393    KXJ82651.1    KK119261    KFM75202.1    GBHO01016496    JAG27108.1    ABLF02008933    GFXV01005866    MBW17671.1    JXUM01241784    KQ635293    KXJ62492.1    NEVH01026106    PNF14658.1    NEVH01011193    PNF32021.1    NEVH01006736    PNF36716.1    NEVH01020940    PNF20481.1    KK112269    KFM57234.1    PYGN01000192    PSN51582.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000054359    UP000235965    UP000069940    + More
UP000249989    UP000053268    UP000007266    UP000245037   

PRIDE

Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE
PF03184   DDE_1
PF07727   RVT_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       
IPR004875   DDE_SF_endonuclease_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   J9L876   X1XGU0   A0A2S2NJB5   A0A1Y1KUU7   + More
J9KPF1   A0A2S2RAN7   J9LF86   A0A087U2S8   X1WN18   J9KCZ4   X1WZH0   A0A2J7QEZ4   A0A2J7Q5G9   X1WNI2   J9LFC9   A0A2J7RB54   A0A2J7RIW7   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7PMP6   A0A2J7Q059   A0A2J7RS77   A0A2J7PMP9   J9LC21   X1WLB2   A0A2J7QUJ9   A0A2J7RPU2   A0A2J7QFL0   A0A2J7R2E1   A0A2S2PR14   A0A2J7Q0Q6   A0A2J7R6U1   A0A2J7RKP3   J9KKL3   A0A2J7Q1Y9   J9KEU4   A0A2J7QY69   A0A2J7PBY3   X1WMU5   A0A2J7PU96   V5GNJ2   A0A2J7PDS9   A0A2J7QR37   X1WWC4   A0A2A4K8E7   V5GNF3   A0A1Y1NA23   J9JS95   A0A2J7Q6J2   A0A182GA28   A0A2S2Q823   A0A2J7Q2R1   A0A2L2YNL2   A0A2A4K918   X1WQR0   A0A2J7RS81   A0A224XF24   X1X928   A0A1Y1LKN6   A0A2S2QTZ8   A0A0N0PA09   A0A2J7R4B1   A0A2J7R579   J9LF85   A0A2J7Q627   Q9XXW0   A0A2J7PQB5   A0A146LCK7   A0A0N1PFV1   A0A2J7RL12   A0A2J7QPI2   A0A087T1W0   A0A2S2PX53   A0A139W8G9   A0A139WA11   A0A2S2QJM7   A0A2J7R8R8   A0A087TMJ9   A0A0A9YJ00   Q9BPQ0   A0A0A9YU04   A0A023EZE6   A0A0A9YGU9   A0A2J7PDM0   A0A2J7RE85   A0A182GMD9   A0A087UCW3   A0A0A9Y7Q6   X1WXU3   A0A2H8TV33   A0A182GB02   A0A2J7PEB1   A0A2J7QTW2   A0A2J7R7D0   A0A2J7PVX3   A0A087SWJ5   A0A2P8Z520  

PDB

6AR3     E-value=1.96721e-05,     Score=116

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0008270   GO:0003676   GO:0004519  

Length:

513

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08173

Exp number, first 60 AAs:

8e-05

Total prob of N-in:

0.00384

outside

1  -  513

 

 

Pi

435.560553

Theta

233.187347

Tajima's D

2.829634

CLR

0.405553

CSRT

0.970751462426879

Interpretation

Uncertain