Gene

KWMTBOMO13054

Pre Gene Modal

BGIBMGA000407

Annotation

PREDICTED:_transcription_cofactor_vestigial-like_protein_4_[Amyelois_transitella]

Location

Bomo_Chr22(-):7375516-7406229      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.526

CDS

ATGGAGAAGGTCGAAACTCCCCTGGATGTGTTATCACGAGCTGCCACCATGGTGCAGCCGTGTCCTGCCTATCCTGTCAGCGACTCCGATAGTTTTGAGACACCCTCGACGGCTTCCAGTGGCGAGTCGGAAGGTGATCGCACCTTGTCCCCGGAGACTCCACGCAGCCAATCTAAAGAGGCTACTGGAAAATGGAGGAGGGAACGGAGATCAATTCGTCTGCCTGAATACAGACCAAAGGAGAACGGGAAGATGGCGCTCAGATCGCAGTCGTTCAACGAAAGACGCACCGTGGTCCCGTTCACGCGTGCACAGCCTCACAGCGACGGAGATCTCTCCGATGAAACTGATGACGGGCCCGCCAATCTCACTGTCAACGGAAAAAAAGCGCCTCCCGAGTACCCGGGCAGCAAGTACGAGGCTCCCATAGACATGCGGCTGCGGTCCCGACCCGCCCCACCGCCCTACAGTCGCCCTTCAGTCATCACCAAAAGCAACGACACCCCACCAGGTTCCATGTCGATGTGTGATCCAGTGATCGACGAGCATTTCAGAAGATCTCTCGGCGACGATTACATGAACTTGTTCAAGAAGAACTCGGAAAACGCCCAGCCCGGCCCTAAGCCCAACATGAAGGACAGAGCCAGCAGCCCTATACTATTCAAGACTGAAGAACCTCCCAAACCGACCAAGATCATCGCTATGGAAATAGACGACCCCAGTTTGTCCGTTGACGATCACTTCGCTAAGGCCTTAGGCGACACGTGGCGGCAATTGCAAACGTCAAAATCGAAAGAGAATGAGAAAACGCAATTGAATCACAAAGGCGGCGTTGACGACCACTTCAGCAAGGCCTTAGGCGAAACGTGGCAGAAAATACAATCGTCGAAACACAATTTGAATTCGGACAACGAGAAGAAAGATCAAACCACGAAAATTATCACAAGGAGCGGGGTCGTAATATAA

Protein

MEKVETPLDVLSRAATMVQPCPAYPVSDSDSFETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQSFNERRTVVPFTRAQPHSDGDLSDETDDGPANLTVNGKKAPPEYPGSKYEAPIDMRLRSRPAPPPYSRPSVITKSNDTPPGSMSMCDPVIDEHFRRSLGDDYMNLFKKNSENAQPGPKPNMKDRASSPILFKTEEPPKPTKIIAMEIDDPSLSVDDHFAKALGDTWRQLQTSKSKENEKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEKKDQTTKIITRSGVVI

Uniprot

H9IT28   A0A3S2PKX3   A0A2A4IYW5   A0A2W1C236   A0A2H1W4X7   A0A194R0Y6   + More
A0A194Q342   A0A212EQU7   A0A0L7LHX9   V5GU55   A0A139WC25   A0A1Y1M0G7   J3JWX6   U4UNB1   A0A1L8DFF9   A0A1L8DFM7   A0A1B0CKU1   A0A1B6C9M0   A0A1B6LZD7   A0A0K2T683   A0A0K2T7I8   E0VAZ2  

Pubmed

19121390    28756777    26354079    22118469    26227816    18362917    + More
19820115    28004739    22516182    23537049    20566863   

EMBL

BABH01013238    RSAL01000005    RVE54354.1    NWSH01005172    PCG64380.1    KZ149892    + More
PZC79036.1    ODYU01006358    SOQ48140.1    KQ460883    KPJ11458.1    KQ459586    KPI97825.1    AGBW02013205    OWR43870.1    JTDY01001116    KOB74826.1    GALX01000772    JAB67694.1    KQ971371    KYB25456.1    GEZM01045505    GEZM01045504    JAV77775.1    BT127744    AEE62706.1    KB632294    ERL91646.1    GFDF01008906    JAV05178.1    GFDF01008907    JAV05177.1    AJWK01016636    AJWK01016637    AJWK01016638    AJWK01016639    AJWK01016640    GEDC01027147    JAS10151.1    GEBQ01010983    JAT28994.1    HACA01004177    CDW21538.1    HACA01004176    CDW21537.1    DS235019    EEB10548.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000037510    UP000007266    UP000030742    UP000092461    UP000009046   

PRIDE

H9IT28   

Pfam

PF15245   VGLL4

Interpro

IPR028184   VGLL4        + More
IPR006627   TDU_repeat       

ProteinModelPortal

H9IT28   A0A3S2PKX3   A0A2A4IYW5   A0A2W1C236   A0A2H1W4X7   A0A194R0Y6   + More
A0A194Q342   A0A212EQU7   A0A0L7LHX9   V5GU55   A0A139WC25   A0A1Y1M0G7   J3JWX6   U4UNB1   A0A1L8DFF9   A0A1L8DFM7   A0A1B0CKU1   A0A1B6C9M0   A0A1B6LZD7   A0A0K2T683   A0A0K2T7I8   E0VAZ2  

PDB

4LN0     E-value=8.66745e-05,     Score=108

KEGG

101738724    no KO assigned | (RefSeq) transcription cofactor vestigial-like protein 4

GO

GO:0006355   GO:0045892   GO:0001223   GO:0016021   GO:0005524   GO:0006468   GO:0004683   GO:0005516   GO:0005515   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR17604  

Length:

321

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01293

outside

1  -  321

 

 

Pi

237.368135

Theta

173.524621

Tajima's D

0.960465

CLR

0.119831

CSRT

0.652217389130544

Interpretation

Uncertain