Gene

KWMTBOMO13046

Pre Gene Modal

BGIBMGA000293

Annotation

PREDICTED:_GTPase_Era?_mitochondrial_[Papilio_xuthus]

Location

Bomo_Chr22(+):7100522-7103492      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.395 Nuclear   Reliability : 2.091

CDS

ATGCTCCCTCGTCGTATCGTTAATTATTCATTTCAACCACAACATGCTGAAAATAAAAACATAGGTAAAATCGTACATGTTGCGATTATTGGAGCCCCAAATTCAGGAAAAAGTACTTTAATAAACAAAATAATTGACCGAAAGATATGTGCTGCTTCAAATAAAGTTCATACAACTACCAAATTAGTAAGAGCAATGTGTTACTGCAATGACACACAGATTGTATTTCTGGATACACCGGGTGTTGTAACTGATAGAGAACAAAAGAAATACAACCTCCCACCTTCAATGTTAGGATCATGTCACAAAAGTCTCAGATGTGCAGATGTAGTTGGTGTTGTCCATGATGCATCATGTAAATATATCAGAGAATCTTTACACAAGGATGTTGTTGAAATGCTGAACTCTGTACAAGATATGCCAAGTTTTCTTATCATAAATAAGGTTGATAAGTTAAGGTCAAAGAAGCAGTTATTGACTTTAGTGAGGAATCTCACTAATGGATTTATTGCTGGAAACTCTATTCCTGGTCCCACAAATCCTAATAAACAGGAGAGAGGCTTCAGTCATTTTTCGGATGTGTTTATGGTATCTGCTTTGAATGGTGATGGAGTTTCAGATATAAGGGAGTACCTTGTCAACAACGCCAAGCCCGGAAAGTTTCATTATTCAACTGAAGAATGGACTGACCAAACGCCGAAATCAGTCATAGAAGACGCTGTGAGAGCGAAATTCTTAGATTTTTTGCATCAAGAAATACCATACAATTTGAAAGTGAAATTAGATTATTACGAAGAGATCGATAACGAAGATAAAATCATATGTTCAGTATCTGTAGAGTGTCCATCAGAAAGGCTGATGCGACTAATAAGCGGCGCCGGCGGCGGCCGCCTCCAACAGATAAAGTCTTCTGTTCGGAATGATTTGATAGACGTCTTCAGGAAAACGGTGATCTTAGACTTGCAATTGCACGTGAAAAATAATTTTTTGTTAGCTAGTTAG

Protein

MLPRRIVNYSFQPQHAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNEDKIICSVSVECPSERLMRLISGAGGGRLQQIKSSVRNDLIDVFRKTVILDLQLHVKNNFLLAS

Similarity

Belongs to the helicase family. Dicer subfamily.

Uniprot

H9ISR6   A0A2H1VCV0   A0A2A4ITF8   S4PL44   A0A2W1BXI4   A0A212FLX9   + More
A0A194QWP5   A0A3S2NRC3   A0A194PWW9   A0A0L7LKY2   D6WW14   B3MJ76   J3JX59   B4MR53   A0A1L8DWN5   Q9VG07   Q179N6   B4HGD0   A0A1L8DWN0   B4R1Y3   N6T0R5   A0A1S4FB92   A0A034WP93   B4KLZ8   B4PPU8   A0A1W4UKF9   A0A182G5E5   A0A3B0J750   B0WML6   B4J4A9   B4LIJ6   W8CEG1   A0A1Q3F6L3   A0A0M4EIS5   B4GBU0   B5E129   A0A0K8WKR8   A0A2M4BQN8   A0A2M4BQY0   A0A1Y1LVM3   A0A1B0CFP8   A0A1A9YBF1   A0A2M3ZEJ9   A0A182QTP0   A0A1A9WDV7   A0A2M4BQN0   A0A2M4BQT9   A0A0L0C9H6   B3P1A1   A0A0A1XNY4   A0A182FUD8   W5JJK8   A0A1B0D336   Q7QG96   A0A182NPH9   A0A182KCP2   A0A1B0ACW8   A0A2R7WEM6   A0A182X0T9   A0A182KY32   A0A182HFL3   A0A182YA76   A0A182V9T9   A0A182PBX8   A0A0A9WH67   A0A182S6X3   A0A182UBA3   A0A084WLQ8   A0A182M5T0   A0A182W2F3   A0A182RR02   A0A1B0B2F4   A0A1I8PGV0   A0A1I8N128   A0A1J1J7M4   A0A1A9UVA5   A0A1B6CJJ9   A0A2S2Q172   A0A069DRU1   A0A0J7L5F6   A0A0C9RKM2   A0A1B0FE40   A0A232F592   A0A088APV4   A0A1B6EQ39   K7IXC9   A0A2R5LJ48   E9IVM6   A0A293LUT1   A0A026WDK5   E2A153   A0A0V0GCD9   A0A195CSS7   A0A2A3EJS7   A0A2H8TN51   A0A195DZK3   A0A131XZE4   A0A0P4VMW1   A0A0K8R7F7   A0A195FLI1  

Pubmed

19121390    23622113    28756777    22118469    26354079    26227816    + More
18362917    19820115    17994087    22516182    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17510324    23537049    25348373    17550304    26483478    18057021    24495485    15632085    28004739    26108605    25830018    20920257    23761445    12364791    20966253    25244985    25401762    26823975    24438588    25315136    26334808    28648823    20075255    21282665    24508170    30249741    20798317    27129103   

EMBL

BABH01013291    ODYU01001851    SOQ38631.1    NWSH01007301    PCG63011.1    GAIX01004230    + More
JAA88330.1    KZ149892    PZC79031.1    AGBW02007691    OWR54742.1    KQ461073    KPJ09729.1    RSAL01000005    RVE54362.1    KQ459586    KPI97817.1    JTDY01000747    KOB76024.1    KQ971361    EFA08204.1    CH902619    EDV38170.1    BT127827    AEE62789.1    CH963849    EDW74592.1    GFDF01003251    JAV10833.1    AE014297    BT031201    AAF54886.2    ABY20442.1    CH477348    EAT42922.1    CH480815    EDW42378.1    GFDF01003252    JAV10832.1    CM000364    EDX13135.1    APGK01056553    APGK01056554    KB741277    KB631816    ENN71073.1    ERL86518.1    GAKP01002815    JAC56137.1    CH933808    EDW10787.1    CM000160    EDW97175.1    JXUM01007080    KQ560230    KXJ83719.1    OUUW01000001    SPP75933.1    DS231998    EDS31087.1    CH916367    EDW00589.1    CH940648    EDW60366.1    KRF79384.1    GAMC01000256    JAC06300.1    GFDL01011892    JAV23153.1    CP012524    ALC41055.1    CH479181    EDW31319.1    CM000071    EDY68686.1    GDHF01000622    JAI51692.1    GGFJ01006255    MBW55396.1    GGFJ01006242    MBW55383.1    GEZM01045908    GEZM01045907    JAV77629.1    AJWK01010250    GGFM01006225    MBW26976.1    AXCN02001829    GGFJ01006254    MBW55395.1    GGFJ01006241    MBW55382.1    JRES01000697    KNC29093.1    CH954181    EDV49290.1    GBXI01001586    JAD12706.1    ADMH02000962    ETN64562.1    AJVK01023227    AAAB01008838    EAA05838.3    KK854700    PTY18008.1    APCN01006364    GBHO01044611    GBHO01037740    GBHO01037738    GBHO01037736    GBHO01037733    GBHO01023638    GBHO01005792    GBRD01010349    GBRD01007685    GBRD01007684    GDHC01002183    JAF98992.1    JAG05864.1    JAG05866.1    JAG05868.1    JAG05871.1    JAG19966.1    JAG37812.1    JAG55475.1    JAQ16446.1    ATLV01024269    KE525351    KFB51152.1    AXCM01001761    JXJN01007622    JXJN01007623    CVRI01000075    CRL08391.1    GEDC01023681    JAS13617.1    GGMS01002303    MBY71506.1    GBGD01002229    JAC86660.1    LBMM01000509    KMQ98187.1    GBYB01013812    GBYB01013813    JAG83579.1    JAG83580.1    CCAG010018330    NNAY01000980    OXU25633.1    GECZ01029712    JAS40057.1    AAZX01000018    GGLE01005342    MBY09468.1    GL766315    EFZ15377.1    GFWV01006851    MAA31581.1    KK107260    QOIP01000001    EZA54170.1    RLU27653.1    GL435707    EFN72820.1    GECL01001095    JAP05029.1    KQ977381    KYN03169.1    KZ288232    PBC31512.1    GFXV01003546    MBW15351.1    KQ979999    KYN18303.1    GEFM01003193    JAP72603.1    GDKW01002781    JAI53814.1    GADI01007394    JAA66414.1    KQ981490    KYN41273.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000283053    UP000053268    + More
UP000037510    UP000007266    UP000007801    UP000007798    UP000000803    UP000008820    UP000001292    UP000000304    UP000019118    UP000030742    UP000009192    UP000002282    UP000192221    UP000069940    UP000249989    UP000268350    UP000002320    UP000001070    UP000008792    UP000092553    UP000008744    UP000001819    UP000092461    UP000092443    UP000075886    UP000091820    UP000037069    UP000008711    UP000069272    UP000000673    UP000092462    UP000007062    UP000075884    UP000075881    UP000092445    UP000076407    UP000075882    UP000075840    UP000076408    UP000075903    UP000075885    UP000075901    UP000075902    UP000030765    UP000075883    UP000075920    UP000075900    UP000092460    UP000095300    UP000095301    UP000183832    UP000078200    UP000036403    UP000092444    UP000215335    UP000005203    UP000002358    UP000053097    UP000279307    UP000000311    UP000078542    UP000242457    UP000078492    UP000078541   

PRIDE

H9ISR6    Q9VG07   

Pfam

PF01926   MMR_HSR1        + More
PF02170   PAZ
PF00636   Ribonuclease_3
PF04851   ResIII
PF03368   Dicer_dimer
PF00271   Helicase_C
PF00573   Ribosomal_L4
PF07650   KH_2

Interpro

IPR027417   P-loop_NTPase        + More
IPR009019   KH_sf_prok-type       
IPR015946   KH_dom-like_a/b       
IPR030388   G_ERA_dom       
IPR005225   Small_GTP-bd_dom       
IPR005662   GTP-bd_Era       
IPR006073   GTP_binding_domain       
IPR003100   PAZ_dom       
IPR006935   Helicase/UvrB_N       
IPR000999   RNase_III_dom       
IPR038248   Dicer_dimer_sf       
IPR005034   Dicer_dimerisation_dom       
IPR036389   RNase_III_sf       
IPR014720   dsRBD_dom       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR013005   Ribosomal_uL4/L1e       
IPR002136   Ribosomal_L4/L1e       
IPR023574   Ribosomal_L4_dom_sf       
IPR004044   KH_dom_type_2       

SUPFAM

SSF54814   SSF54814        + More
SSF52540   SSF52540       
SSF69065   SSF69065       
SSF52166   SSF52166       

Gene 3D

3.30.300.20     3.30.160.380     3.40.1370.10     1.10.1520.10    

CDD

cd04163  Era
cd00593  RIBOc
cd00079  HELICc

ProteinModelPortal

H9ISR6   A0A2H1VCV0   A0A2A4ITF8   S4PL44   A0A2W1BXI4   A0A212FLX9   + More
A0A194QWP5   A0A3S2NRC3   A0A194PWW9   A0A0L7LKY2   D6WW14   B3MJ76   J3JX59   B4MR53   A0A1L8DWN5   Q9VG07   Q179N6   B4HGD0   A0A1L8DWN0   B4R1Y3   N6T0R5   A0A1S4FB92   A0A034WP93   B4KLZ8   B4PPU8   A0A1W4UKF9   A0A182G5E5   A0A3B0J750   B0WML6   B4J4A9   B4LIJ6   W8CEG1   A0A1Q3F6L3   A0A0M4EIS5   B4GBU0   B5E129   A0A0K8WKR8   A0A2M4BQN8   A0A2M4BQY0   A0A1Y1LVM3   A0A1B0CFP8   A0A1A9YBF1   A0A2M3ZEJ9   A0A182QTP0   A0A1A9WDV7   A0A2M4BQN0   A0A2M4BQT9   A0A0L0C9H6   B3P1A1   A0A0A1XNY4   A0A182FUD8   W5JJK8   A0A1B0D336   Q7QG96   A0A182NPH9   A0A182KCP2   A0A1B0ACW8   A0A2R7WEM6   A0A182X0T9   A0A182KY32   A0A182HFL3   A0A182YA76   A0A182V9T9   A0A182PBX8   A0A0A9WH67   A0A182S6X3   A0A182UBA3   A0A084WLQ8   A0A182M5T0   A0A182W2F3   A0A182RR02   A0A1B0B2F4   A0A1I8PGV0   A0A1I8N128   A0A1J1J7M4   A0A1A9UVA5   A0A1B6CJJ9   A0A2S2Q172   A0A069DRU1   A0A0J7L5F6   A0A0C9RKM2   A0A1B0FE40   A0A232F592   A0A088APV4   A0A1B6EQ39   K7IXC9   A0A2R5LJ48   E9IVM6   A0A293LUT1   A0A026WDK5   E2A153   A0A0V0GCD9   A0A195CSS7   A0A2A3EJS7   A0A2H8TN51   A0A195DZK3   A0A131XZE4   A0A0P4VMW1   A0A0K8R7F7   A0A195FLI1  

PDB

3IEV     E-value=3.48123e-20,     Score=241

KEGG

101739474    K03595 GTPase | (RefSeq) GTPase Era, mitochondrial

GO

GO:0003723   GO:0005525   GO:0000028   GO:0005759   GO:0019843   GO:0043024   GO:0016021   GO:0003677   GO:0006396   GO:0004525   GO:0005524   GO:0005840   GO:0006412   GO:0003735   GO:0005622   GO:0016668   GO:0045454   GO:0005515   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

Length:

333

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01504

Exp number, first 60 AAs:

0.0091

Total prob of N-in:

0.02561

outside

1  -  333

 

 

Pi

190.50993

Theta

150.629882

Tajima's D

-1.000536

CLR

190.704114

CSRT

0.138293085345733

Interpretation

Uncertain