SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13042
Pre Gene Modal
BGIBMGA000415
Annotation
PREDICTED:_uncharacterized_protein_LOC101742417_[Bombyx_mori]
Location
Bomo_Chr22(-):7052682-7075671      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 2.113
 

Sequence

CDS
ATGGCTCAGTCTAATGAAAAAGTTGATTTTTCTGGCTTATTTAAATTGGATGTGCTAATTCATGCAGATATTGTATCGTACAGTTTCTATGAAGTCGGTCTAAAGAAGTTTTTTGCATTTTCAAGTGACAAAGAATTATTTTTCATATATATTGATCCATTGTCAAAGAGGTTTGAACGAAATTATGATTGGGACTTCGTGGATAATCCAGTTTATTGCATGTGTTTTGAGCCTAGTGGGACCTGGACAATTATTTTAAGTGAACAGAAAGTGCTTCTAGTACCTTTTCTACCCCAATTCATTCCACAAAATGACTTCGATCACAAGTGGTCTTTGTCAAGTGTTACTGTTCTTCCACTTGGTAACATTCCAAAACCTACATCAGTGGTATTTTGGCTTACTAAAGAGTCTGAAAATATACTCATAATTGCATCTAAGGGCGGAACAATATCCTTTTATTCATTGGAGACCCAGAGTGTTGTAGGGGAATGCAAGGTGTCAGGAGAGATTACAGATTTACAGATTTGTTTTGATGACTCATTGGATTTGTTAGCACTTTTGATTTCGAGCACTAAATCACAACAGTGGAAATTAGTATTAGAGCACAGATCATATGGTTATAGTTGGTTACAACAAATCAAAGCTAACGACAGAGATAAAAAAGATGGATTTATGTCTTATATAAAGCAACTATCAAAGGATAAAATTACACTTTTTATTCAAGGAAGTTCAAAAGATGAACACAAGTCACAAACGGTGGAGTATGTATTGAAACCAACCGAATACCTTCCGCTGTTTAGAAAAGGTTCGAATAATTGGGCATTGACTGCTCAATATGTAAACGGAAGACATTTCCTGACTGCGTTTGAATTAAATGAGGGAACAATGATACTTGAAAGCCCTGAAGAAGACACACCATCTAGAACTCTGAGACCACAAATAAAAAAGGATGGTTTATATGTACAAGGTTTGTGGTCCCAAAGGTTAATTTATCTATTGAGGAAAAATGAAATTGAGGTGCACAGTTCCAGCTTTTCAGTCATTCAGCACGAAAGCTCACAAGGAGTTAATCGAGATTTTACTGAAATGTGGTCTGCGGAACTCATCGGCGATGTGCAGCGCGCTCATCTTATGGCTGCTAAAGACGCTTCCACAACAACTGGGGATTGGCAAGAGCCAACGTTTTTGTGTGATTTGCAACTACCGAGGTTCACTTTACAACCGTGTTTGATTGTAACAAACTGCGGTGCATATATATTGAATACTATCTGCGAGGTGTGCGAGTGGCTCGTTGGCACGATATGTCGCGGCGGGACGGGCGCGGAGCAGCGCGCGGCGGCGCTGGGCGCGGCGCTGCCCCCGCTGCTGCGCGCCGCCGCGGACCTGCTCATGTCGCGGGGGAACATCGCATCCGCGCACTACCTCTACTCGTTAGCGCAAAGTCCACCAGATGGCTGGGTAGCCCGACTAGGTGTGTTTGGTCGTCTCCACGAACTGTCCATGTTTAAACAATCAGCGAATGTCGGAAGTCTTGGGAATGCTGCAATTATCGTCAAATTACTGGCTGTGTTAATCAAAATGTCTACTAATGAAGAAGAAATATTCGACTGGGATGTAAAATTCACAACTCTTAATCCGGCTGAACTATTGGAATTGGCTTCATTTGCTGCTGCGGTTGGCTTGTGGGAGATGCTACCATTATTCAGCATTCACAGAGGATACCCTAACATACTTCTCTCAGCAGTAAAGTCTCGAAGTGCTATATGCAGAGGAGCTTTAAACTGTCTCCTTAGGGAGCAATGTGTTGTACCACTGCTGTTGGAAGAAGACAGCCAATGGCTCCTTGATTTTATTATTGGCAATTGTGAAAAGTTTGACACCTTCCTACTTAAATGTCTATGTTTGTGGTTGAATCCGTTACAAGACCAACTGCGGCCTGTAATGAGGGACATGAAGCAGGGCATATCCACAGTTTATACAGCAAAAATGACGCAACTAATATCTACGTTCGTCAATGTCGCCTGTGCTGTGGAAGCCCGGGAACCATGTCAAGATATACATTTGGAGGTCACGCAACCTCCATCCGACACATGGAAGAATCAAGTGTTCACACCCAGACGCTCCCTCACTTGCGGGCTGGCGCATTGGGCCGTGGTCAGCGACGGCAACGCCAGGGTGATGATGGCTAGCACACCAGTCAACACGGAGCTCATCGGCAGGGTTATAGACGTGGCCTGTGGACGACACCACACTCTCATTTTAACGGAAAATGGATTGTACAGCGCGGGCGACAACACGTTCGGTCAGCTGGGCGTGGGGCGGCGGTGGCGCGGCGCGGCGGGCGAGGCGGCGCGCGCGTCGGGCGGCGTGCTGCGCGTGCGGCTCGCGGGGGGCGCGCCCCTCGTGTGCGTCGCCGCCGGACACTACCACTCCGCCGCGGTGGACGCCGGCGGGCGACTCCTCACGTGGGGGTGGGGAGTGCACGGTCAGCTGGGCCTCGGAAACATCGACGATCAGTGGACCCCACAACTGGTTACGAAGTTTTTGGGGAGAAAGGTGCAGAGCGTGGGGTGCGGCGCGTGCCACTCGGTACTGCTGACGCGTGGCGGCGAGCTGTGGGCGTGCGGCGCCAGCGTGTTCGGGCAGCTGGGCACGGGGCAGCGCGGCAAGGCGTCGCTACCGGTGCGCGTGGCGCTGCACGAACCCGTACGCGCCCTAGCCGCCGGATACTTTCATAACTTGGCGTTAACACATAAAGGCGAGGTGTACGTGTGGGGCGCCAGTCCGCAGCAGGTGCGCGCCGCCGCCGCACGACGCGCCGCAGAGCCCTCCTCCCCCACCCTGCCCTTCCACGACGATAACGACAGATACCTCGCACCCTCCTGCGTCGATACTACCAACGTGCGAGGGAGAATCGTACAGATATCCGCTGGTTGGCATCATTCATGCATAATAAACAACATGGGCTCTATTTATACCTGGGGACTTAATTTCGATGGACAGCTAGGCAGTGGCGATAGAAAACAAATACAGATTCCAACCGAAGTTAAAATTCGTACGGAGACACAACCTCATACTATGAAAAGCGATAGTGAGAAAACTACAGATGCTGATGAAAATATGGAGTTTAATACCAAAGCGTTGGTCGGGTGCGGTGGTGACTTCACCGTCTATATCGACGACGATGGACGAATTTATTCCACTGGCAACACTCATTTACAGATCTCCAATGAGAAAACGAAAGGAGGTAATCGGGTTATTATGATGAAAACAACGAAACGCGTAATCAAGATTCCAGCGAGCCGCACGAACCATAAGTTCCTGTTCCAGCCCGTTGCCGCTGTCGACATGTTATCTAGCGCCAACGACTTGCAAAGGCAACCTATAGTATCCCAGCTAAACCCACTACAGTCCATGAAGGATTTCAAAAGGAAGTCCTGGGCCGATGACGTCATAATGCTACTCAAACCGTGGATAAACGAAGCCAATGTAGCAAGGAATTTAAATATGGCTGCCAAATTTGCTTATCATAATAACGCATACTCTGAGTGTTTGAGGTTAATGTTAGAGAATTTAAAACGCGGTCCCCAAAACGATTGCTTCTACGTGCAACACAGCACGCCCCTTGAGATTGAACACAGCGCGGACTGCGAGGCTGGACCGCCTACCCGCAAAGACGAGGTCAAAATAACTATTACAAATGTCATAGCAAAAAGGATAAAAGATGTGTCCTTGGCTATTCTGAACGATGTCGCCTATAACGTAATAGATCCATCAACCTTTAAATCATTACCGTGTTGCTGTGATGAATTAAAATATCTGTTGAAGAAAAAACTACCCAATGCAACGGTAAACATTTTCGAACAAGATCTCTCTGGTAAAGCAGCTGATGTGATTGATAAATTGATAAACATATTCCCCGTGGACGCAGCACTGTGGGAAATATGTTTCCGTTTGTCTAAAGATTTTTACATTAATAACAGTTTATCTATAACTGAACTGGAACGTGTTTTGCGTAATGGACACATGGGGCTGAATTAG
Protein
MAQSNEKVDFSGLFKLDVLIHADIVSYSFYEVGLKKFFAFSSDKELFFIYIDPLSKRFERNYDWDFVDNPVYCMCFEPSGTWTIILSEQKVLLVPFLPQFIPQNDFDHKWSLSSVTVLPLGNIPKPTSVVFWLTKESENILIIASKGGTISFYSLETQSVVGECKVSGEITDLQICFDDSLDLLALLISSTKSQQWKLVLEHRSYGYSWLQQIKANDRDKKDGFMSYIKQLSKDKITLFIQGSSKDEHKSQTVEYVLKPTEYLPLFRKGSNNWALTAQYVNGRHFLTAFELNEGTMILESPEEDTPSRTLRPQIKKDGLYVQGLWSQRLIYLLRKNEIEVHSSSFSVIQHESSQGVNRDFTEMWSAELIGDVQRAHLMAAKDASTTTGDWQEPTFLCDLQLPRFTLQPCLIVTNCGAYILNTICEVCEWLVGTICRGGTGAEQRAAALGAALPPLLRAAADLLMSRGNIASAHYLYSLAQSPPDGWVARLGVFGRLHELSMFKQSANVGSLGNAAIIVKLLAVLIKMSTNEEEIFDWDVKFTTLNPAELLELASFAAAVGLWEMLPLFSIHRGYPNILLSAVKSRSAICRGALNCLLREQCVVPLLLEEDSQWLLDFIIGNCEKFDTFLLKCLCLWLNPLQDQLRPVMRDMKQGISTVYTAKMTQLISTFVNVACAVEAREPCQDIHLEVTQPPSDTWKNQVFTPRRSLTCGLAHWAVVSDGNARVMMASTPVNTELIGRVIDVACGRHHTLILTENGLYSAGDNTFGQLGVGRRWRGAAGEAARASGGVLRVRLAGGAPLVCVAAGHYHSAAVDAGGRLLTWGWGVHGQLGLGNIDDQWTPQLVTKFLGRKVQSVGCGACHSVLLTRGGELWACGASVFGQLGTGQRGKASLPVRVALHEPVRALAAGYFHNLALTHKGEVYVWGASPQQVRAAAARRAAEPSSPTLPFHDDNDRYLAPSCVDTTNVRGRIVQISAGWHHSCIINNMGSIYTWGLNFDGQLGSGDRKQIQIPTEVKIRTETQPHTMKSDSEKTTDADENMEFNTKALVGCGGDFTVYIDDDGRIYSTGNTHLQISNEKTKGGNRVIMMKTTKRVIKIPASRTNHKFLFQPVAAVDMLSSANDLQRQPIVSQLNPLQSMKDFKRKSWADDVIMLLKPWINEANVARNLNMAAKFAYHNNAYSECLRLMLENLKRGPQNDCFYVQHSTPLEIEHSADCEAGPPTRKDEVKITITNVIAKRIKDVSLAILNDVAYNVIDPSTFKSLPCCCDELKYLLKKKLPNATVNIFEQDLSGKAADVIDKLINIFPVDAALWEICFRLSKDFYINNSLSITELERVLRNGHMGLN

Summary

Uniprot
H9IT36   A0A2H1VCP8   A0A2W1BVE5   A0A212FM22   A0A194QW76   A0A0L7L022   + More
A0A1W4XSZ2  
Pubmed
19121390    28756777    22118469    26354079    26227816   
EMBL
BABH01013295    BABH01013296    BABH01013297    BABH01013298    ODYU01001851    SOQ38628.1    + More
KZ149892    PZC79028.1    AGBW02007691    OWR54740.1    KQ461073    KPJ09732.1    JTDY01004084    KOB68624.1   
Proteomes
UP000005204    UP000007151    UP000053240    UP000037510    UP000192223   
PRIDE
H9IT36   
Pfam
PF00415   RCC1
Interpro
IPR000408   Reg_chr_condens        + More
IPR009091   RCC1/BLIP-II       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
SUPFAM
SSF50985   SSF50985        + More
SSF50978   SSF50978       
Gene 3D
2.130.10.30     2.130.10.10    
ProteinModelPortal
H9IT36   A0A2H1VCP8   A0A2W1BVE5   A0A212FM22   A0A194QW76   A0A0L7L022   + More
A0A1W4XSZ2  
PDB
4NC4     E-value=4.69318e-28,     Score=315

Ontologies

KEGG
101742417    no KO assigned | (RefSeq) uncharacterized LOC101742417
GO
GO:0005515   GO:0004148   GO:0050660   GO:0016668   GO:0045454   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

Topology

Length:
1346
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.563639999999998
Exp number, first 60 AAs:
0.40882
Total prob of N-in:
0.02043
outside
1  -  1346
 
 

Population Genetic Test Statistics

Pi
231.851165
Theta
185.459589
Tajima's D
1.057717
CLR
0.350351
CSRT
0.670216489175541
Interpretation
Uncertain
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