Gene

KWMTBOMO13022

Annotation

PREDICTED:_peroxisome_biogenesis_factor_2_[Bombyx_mori]

Location

Bomo_Chr22(-):6608747-6611229      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.545

CDS

ATGGTTGTAAATTACATACCCCGCGTAACACAGCTGGACGCTGTAAGCTTAGATATTCAAGTGGAAGAACTTATAAAAGAATTGTTCTTGCAGGCGACAAAGTTTATTGAGCCACGGTATATACAACCTTTTTTACCTGAGATTGAATTGTTGATAAGGACATGGATCTTCAAGCATTCAGTGTATGACAAAAAATACACATTTGGGCAAGAAATATTATCAGTACAATATTCAACATTGAATTTTACAAAGAGTAAATTGTGCTGGTATTATGGTTACACCATTGGTTTAAAATATTTAAAGGAAAGAGGCATATTTAGTTTGACATCTAACACAAAAGTACAAAATTTCATACAAAATGTTGAAAAAATTCAGTTATTCAGTGAAGTACTAAATTTTCTAAGGTTTATACAAAGTGGAAAACATCCTTTACTAATAGACTTCATTTTAGGCTTAGAGCTAATAGGTGTTAATCAAACAAGAGAAGATTTGACAGATTTTTCTTGGACTCGAGAACTTCTATGGCATAATTTGATTGAACTTTTTGGCACTGGAATATCACTTTTTAATATAATTGGTTTAAAGCAAAGGCTCTCAAAGTTTTTGAAATATGTATGGTGGAACAAACCTGTGCATACATTTAGTCAACCTGGAGCTCCAAATATGACTTTGAGTACTGTGTGTGCTTGTTGCTCAAACAAACCAGTATTGCCTCATACTATGGGATGCAGTCATATTTTTTGTTATTACTGTTTGGTGGCAAACAAAACTATGGATCAAGATTATGCATGTCCTAAATGCTACCACGTAGGAAAAAATGTTGCCAAACTTACAGCTTCCTAA

Protein

MVVNYIPRVTQLDAVSLDIQVEELIKELFLQATKFIEPRYIQPFLPEIELLIRTWIFKHSVYDKKYTFGQEILSVQYSTLNFTKSKLCWYYGYTIGLKYLKERGIFSLTSNTKVQNFIQNVEKIQLFSEVLNFLRFIQSGKHPLLIDFILGLELIGVNQTREDLTDFSWTRELLWHNLIELFGTGISLFNIIGLKQRLSKFLKYVWWNKPVHTFSQPGAPNMTLSTVCACCSNKPVLPHTMGCSHIFCYYCLVANKTMDQDYACPKCYHVGKNVAKLTAS

Uniprot

A0A2W1C0J1   A0A2H1VC87   S4PGU6   A0A0L7LIL2   A0A194PWV0   A0A1E1W5F7   + More
A0A3S2LF70   A0A212EXC6   A0A194QW41   A0A067RS40   A0A023EN90   Q179Y9   B4PG43   Q9VSH8   B4HJG9   B4QLM7   Q7K1R0   B3NFT6   A0A1I8MZ59   A0A1I8P1A5   A0A1W4UTX5   A0A0A1XED4   B4N4B9   A0A0K8UTL6   A0A3B0JT60   B4KYC6   A0A182TRU2   A0A034WGA5   A0A034WCR7   B3M8K2   A0A182UVC2   A0A182KVG6   A0A1J1IRW5   A0A182I5M1   Q2LYM8   B4H623   A0A1Q3FCA5   B4LDJ4   A0A182Y226   Q7PFH7   A0A182FVE0   A0A182X452   A0A1B0AYA4   W5JB64   A0A182NP91   A0A182RWL3   A0A182LWA1   A0A182QNH2   B4IZF8   A0A0M9ABS8   A0A182T4A7   B0WDD2   A0A0M4EZP3   A0A182JY00   A0A0L7R5B0   A0A182W9E7   A0A139WIP5   A0A182GFF1   A0A310SNB4   A0A2A3EGC6   J3JVV7   E2B2C0   A0A091IXP2   A0A084W672   Q3UJB7   Q28DK5   F1RWL5   A0A088AW79   A0A0J7NQP7   A0A286ZIN7   A0A2Y9QVX9   J9LYP5   E9IMR2   A0A0A0AZ57   G5BUW0   K7EW56   A0A087V7Q9   Q91YZ5   A0A2F0BMQ6   A0A087QPD0   A0A026VZ17   A0A2Y9F1W4   G1KNL9   A0A182P1T2   A0A091TCL7   A0A091QLQ6   A0A182IPA0   A0A093F3F8   A0A093QWA4   M7BYP4   W5UCM8   H0XRG6   A0A091H6Z9   E2AJD9   A0A1L8FZ98   A0A286XB42   A0A091VQH4   A0A195B753   A0A158NH19   A0A093KFD7  

Pubmed

28756777    23622113    26227816    26354079    22118469    24845553    + More
24945155    17510324    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    25315136    25830018    25348373    20966253    15632085    25244985    12364791    14747013    17210077    20920257    23761445    18362917    19820115    26483478    22516182    23537049    20798317    24438588    10349636    11042159    11076861    11217851    12466851    16141073    20431018    30723633    21282665    21993625    17381049    12040188    15489334    19468303    24508170    30249741    23624526    23127152    27762356    21993624    21347285   

EMBL

KZ149892    PZC79007.1    ODYU01001784    SOQ38460.1    GAIX01006060    JAA86500.1    + More
JTDY01000931    KOB75398.1    KQ459586    KPI97797.1    GDQN01008839    JAT82215.1    RSAL01000021    RVE52420.1    AGBW02011787    OWR46135.1    KQ461073    KPJ09753.1    KK852456    KDR23620.1    GAPW01003238    JAC10360.1    CH477343    EAT43046.1    CM000159    EDW93187.1    AE014296    AAF50441.1    CH480815    EDW40693.1    CM000363    CM002912    EDX09687.1    KMY98354.1    AY061512    AAL29060.2    CH954178    EDV50698.1    GBXI01004997    JAD09295.1    CH964095    EDW78993.2    GDHF01022275    JAI30039.1    OUUW01000009    SPP85297.1    CH933809    EDW17705.1    GAKP01005590    JAC53362.1    GAKP01005591    JAC53361.1    CH902618    EDV39976.2    CVRI01000059    CRL02981.1    APCN01003462    CH379069    EAL29834.2    CH479212    EDW33240.1    GFDL01009912    JAV25133.1    CH940647    EDW68932.2    AAAB01008823    EAA45311.4    JXJN01005581    ADMH02001629    ETN61702.1    AXCM01003767    AXCN02001814    CH916366    EDV96713.1    KQ435709    KOX80043.1    DS231896    EDS44445.1    CP012525    ALC43882.1    KQ414654    KOC65946.1    KQ971341    KYB27725.1    JXUM01059486    KQ562054    KXJ76804.1    KQ761783    OAD57008.1    KZ288256    PBC30534.1    APGK01018912    BT127375    KB740085    KB632303    AEE62337.1    ENN81557.1    ERL91822.1    GL445130    EFN90157.1    KK501045    KFP12348.1    ATLV01020738    KE525306    KFB45716.1    AK146530    BAE27238.1    AAMC01094677    BC121553    CR855463    KV461506    AAI21554.1    CAJ82611.1    OCA14536.1    AEMK02000022    DQIR01229832    DQIR01259438    DQIR01259439    DQIR01261446    DQIR01263088    DQIR01264649    DQIR01269338    DQIR01269339    DQIR01276770    DQIR01321558    HDB85309.1    HDC77032.1    LBMM01002473    KMQ94785.1    DQIR01029102    HCZ84577.1    ABLF02027501    ABLF02027504    ABLF02027507    ABLF02032633    ABLF02032641    GL764255    EFZ18073.1    KL873469    KGL98813.1    JH171989    GEBF01004724    EHB13071.1    JAN98908.1    AGCU01142423    KL483036    KFO08651.1    AC119876    BC012404    AK151121    AK152331    CH466577    AAH12404.1    BAE30130.1    EDL05215.1    NTJE010341758    MBW04285.1    KL225796    KFM03084.1    KK107566    QOIP01000006    EZA48915.1    RLU22043.1    KK445784    KFQ71602.1    KK799655    KFQ27819.1    KK381566    KFV48679.1    KL224729    KFW63024.1    KB476411    EMP42314.1    JT411894    AHH39650.1    AAQR03011617    AAQR03011618    AAQR03011619    AAQR03011620    AAQR03011621    KL527306    KFO91621.1    GL439972    EFN66460.1    CM004476    OCT76914.1    AAKN02000902    KL411249    KFR04738.1    KQ976574    KYM80087.1    ADTU01015439    KL207004    KFV88879.1   

Proteomes

UP000037510    UP000053268    UP000283053    UP000007151    UP000053240    UP000027135    + More
UP000008820    UP000002282    UP000000803    UP000001292    UP000000304    UP000008711    UP000095301    UP000095300    UP000192221    UP000007798    UP000268350    UP000009192    UP000075902    UP000007801    UP000075903    UP000075882    UP000183832    UP000075840    UP000001819    UP000008744    UP000008792    UP000076408    UP000007062    UP000069272    UP000076407    UP000092460    UP000000673    UP000075884    UP000075900    UP000075883    UP000075886    UP000001070    UP000053105    UP000075901    UP000002320    UP000092553    UP000075881    UP000053825    UP000075920    UP000007266    UP000069940    UP000249989    UP000242457    UP000019118    UP000030742    UP000008237    UP000053119    UP000030765    UP000008143    UP000008227    UP000005203    UP000036403    UP000248480    UP000007819    UP000053858    UP000006813    UP000007267    UP000000589    UP000053286    UP000053097    UP000279307    UP000248484    UP000001646    UP000075885    UP000075880    UP000054081    UP000031443    UP000221080    UP000005225    UP000000311    UP000186698    UP000005447    UP000053283    UP000078540    UP000005205    UP000053584   

PRIDE

Q9VSH8    Q7K1R0    F1RWL5   

Pfam

PF04757   Pex2_Pex12        + More
PF00097   zf-C3HC4
PF03676   UPF0183

Interpro

IPR006845   Pex_N        + More
IPR001841   Znf_RING       
IPR017907   Znf_RING_CS       
IPR013083   Znf_RING/FYVE/PHD       
IPR018957   Znf_C3HC4_RING-type       
IPR005373   UPF0183       
IPR039156   UPF0183/BROMI       

Gene 3D

3.30.40.10    

ProteinModelPortal

A0A2W1C0J1   A0A2H1VC87   S4PGU6   A0A0L7LIL2   A0A194PWV0   A0A1E1W5F7   + More
A0A3S2LF70   A0A212EXC6   A0A194QW41   A0A067RS40   A0A023EN90   Q179Y9   B4PG43   Q9VSH8   B4HJG9   B4QLM7   Q7K1R0   B3NFT6   A0A1I8MZ59   A0A1I8P1A5   A0A1W4UTX5   A0A0A1XED4   B4N4B9   A0A0K8UTL6   A0A3B0JT60   B4KYC6   A0A182TRU2   A0A034WGA5   A0A034WCR7   B3M8K2   A0A182UVC2   A0A182KVG6   A0A1J1IRW5   A0A182I5M1   Q2LYM8   B4H623   A0A1Q3FCA5   B4LDJ4   A0A182Y226   Q7PFH7   A0A182FVE0   A0A182X452   A0A1B0AYA4   W5JB64   A0A182NP91   A0A182RWL3   A0A182LWA1   A0A182QNH2   B4IZF8   A0A0M9ABS8   A0A182T4A7   B0WDD2   A0A0M4EZP3   A0A182JY00   A0A0L7R5B0   A0A182W9E7   A0A139WIP5   A0A182GFF1   A0A310SNB4   A0A2A3EGC6   J3JVV7   E2B2C0   A0A091IXP2   A0A084W672   Q3UJB7   Q28DK5   F1RWL5   A0A088AW79   A0A0J7NQP7   A0A286ZIN7   A0A2Y9QVX9   J9LYP5   E9IMR2   A0A0A0AZ57   G5BUW0   K7EW56   A0A087V7Q9   Q91YZ5   A0A2F0BMQ6   A0A087QPD0   A0A026VZ17   A0A2Y9F1W4   G1KNL9   A0A182P1T2   A0A091TCL7   A0A091QLQ6   A0A182IPA0   A0A093F3F8   A0A093QWA4   M7BYP4   W5UCM8   H0XRG6   A0A091H6Z9   E2AJD9   A0A1L8FZ98   A0A286XB42   A0A091VQH4   A0A195B753   A0A158NH19   A0A093KFD7  

KEGG

101743280    K06664 peroxin-2 | (RefSeq) peroxisome biogenesis factor 2

PATHWAY

04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016874   GO:0005623   GO:0007285   GO:0007286   GO:0016558   GO:0048137   GO:0007112   GO:0000209   GO:0004842   GO:0005777   GO:0008270   GO:0007031   GO:0046872   GO:0000122   GO:0005779   GO:0016593   GO:0031648   GO:0000038   GO:0006635   GO:0048147   GO:0050680   GO:0005515   GO:0006412   GO:0043565   GO:0007155   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR13465   PTHR13465:SF2  

Length:

280

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

7.02316

Exp number, first 60 AAs:

0.01497

Total prob of N-in:

0.18900

outside

1  -  280

 

 

Pi

202.464453

Theta

208.928273

Tajima's D

0.144446

CLR

123.115156

CSRT

0.409279536023199

Interpretation

Uncertain