SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13003  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000266
Annotation
cuticular_protein_RR-2_motif_98_precursor_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.778 PlasmaMembrane   Reliability : 1.207
 

Sequence

CDS
ATGTTCTCCAAAATCGTAGTACTGTGCGCTTTGGTCGCGGTGTCGAAAGCTGGACTTCTGGCTGCTCCCGTGCACTACTCTCCCGCTGAAGCCGTTTCTTCCCAAAGCATTGTGCGCCATGACCAGCCTCAGCTCCACACTGCCAAGCTCGCTGTTGCTACCCCTGTAGCCTACCACGCGGCCCCTGTAGCGTACCAGGCTGCCCCAGTTGCCTACCACGCGGCCCCTGTAGCGTACCAGGCCGCCCCAGTTGCCTACCACACTTCTCCACTCCGCTACTCCTCGGCTGAATCTGTCTCGTCCCAAAACATCGTCCGTCATGACCAGCCCCAGACTATCCAATACGCCGCTCCTGTAGCCAAGTTGGCCGTCGCTGCTCCCGTAGCTTACCACGCTGCTCCCGCCCCTGTTACCTACCACGCCGCCCCTGCCGCCGTGTCTTACCACTCTGCCCCAGTAGCCAAAATTGTAGCTCACCAAGCTGAGGAAATTGCCTACCCCAAGTACGAGTACAACTACTCCGTAGCTGACGGTCACTCCGGCGACAACAAGTCCCAACAAGAGGTACGCGACGGTGATGTTGTGAAGGGTTCATACTCTTTCCACGAAGCTGACGGCTCTATCAGAACTGTTGAATACACCGCTGACGACCACAGCGGCTTCAACGCGGTCGTCCACAACACCGCCCCCACAGCCGCCCCTACTCACATCAAGGCTGTGCCCGCTCTTCAGTACTACCACCACTAA
Protein
MFSKIVVLCALVAVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQLHTAKLAVATPVAYHAAPVAYQAAPVAYHAAPVAYQAAPVAYHTSPLRYSSAESVSSQNIVRHDQPQTIQYAAPVAKLAVAAPVAYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKAVPALQYYHH

Summary

Pfam
PF00379   Chitin_bind_4
Interpro
IPR031311   CHIT_BIND_RR_consensus        + More
IPR000618   Insect_cuticle       

Ontologies

Topology

SignalP
Position:   1 - 21,         Likelihood:  0.955892
 
 
Length:
248
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
8.00987
Exp number, first 60 AAs:
7.80486
Total prob of N-in:
0.36781
outside
1  -  248
 
 

Population Genetic Test Statistics

Pi
287.512174
Theta
189.792789
Tajima's D
1.469305
CLR
0.532392
CSRT
0.775711214439278
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28467696 YEYGIFAQK 100.00 4e-05
29197581 YIGNIHGNEVIGR 100.00 4e-05
28467696 GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR 100.00 0.007
28467696 IVAGSPSGASGGEAAAEGDDGSAAK 100.00 0.029
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