SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12994  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000263
Annotation
cuticular_protein_RR-2_motif_105_precursor_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.63 PlasmaMembrane   Reliability : 1.205
 

Sequence

CDS
ATGATCGAGCCGAAAAGTGATAACTTCCAACCTGTTAACCTCGGCCTCCAAAATACTGGCAGCTATAAAAGCCGTTTTGATTCCCACATTTCATCAGTTGCTTCGGAACATCATATCAATATGTTTGCCAAAATTGTTGCTTTAAGCATTGTACTAGCAGTGGCCACTGCAGGTCTCTTACCGGAACCACATTACTCGTCGGCTGCGGCCGTCTCCTCTCAAAGCATCGTCCGTCACGACCAGCCACAGCTCCATGCCACCAAATATGTAGCAGCCGCTCCAGTAGCCGTCCACGCCGCTCCTGTAGCATACCACGCAGCCCCTGTCGCCTACCACTCCGCCCCCGCTCACTACTCGTCTGCTGGCGCCGTCTCCTCCCAGACCATCCTACGTCACGACCAGCCTCACGCCACCAACTACATCGCCGCCGCTGGCCCCGTCCACTACGCCGCCGCTGGCCCCGTCCACTACGCCGCTCCTGAAGCCAGAGTGATCGCTCCAGCCCATAAAGTACTTGTCGCCGGCCACCATGAAGAAGAATATGCTCACCCTAAATACGACTTCGCTTACTCTGTGGCTGACGGACACAGTGGCGACAACAAGTCCCAGCACGAGTCCCGCGACGGCGACGCTGTGCACGGCGAGTACACCTTGCTCGAAGCTGACGGCTCAGTGCGCAAGGTTGAGTACACCGCTGACGACCACCACGGCTTCAACGCTGTTGTTAGCAACACCGCCCCCGCTCACCACGCAGCTCATGCCGCCCACGCACCCGTCCTTCTGGCTCATCATTAA
Protein
MIEPKSDNFQPVNLGLQNTGSYKSRFDSHISSVASEHHINMFAKIVALSIVLAVATAGLLPEPHYSSAAAVSSQSIVRHDQPQLHATKYVAAAPVAVHAAPVAYHAAPVAYHSAPAHYSSAGAVSSQTILRHDQPHATNYIAAAGPVHYAAAGPVHYAAPEARVIAPAHKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRKVEYTADDHHGFNAVVSNTAPAHHAAHAAHAPVLLAHH

Summary

Pfam
PF00379   Chitin_bind_4
Interpro
IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

Ontologies

Topology

Length:
264
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
5.15985999999999
Exp number, first 60 AAs:
4.48837
Total prob of N-in:
0.20181
outside
1  -  264
 
 

Population Genetic Test Statistics

Pi
251.381549
Theta
148.456817
Tajima's D
2.119944
CLR
0.956417
CSRT
0.901454927253637
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28467696 YDEVAQTIEFAR 100.00 6e-05
29197581 VDEMTSCIVK 100.00 6e-05
28467696 HDQPHATNYIAAAAPVHYASPVHYTAPVAK 100.00 1e-04
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