Gene

KWMTBOMO12989

Pre Gene Modal

BGIBMGA000434

Annotation

PREDICTED:_cuticular_protein_RR-2_motif_112_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr22(-):6363597-6364449      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.053

CDS

ATGGTTTCCAAGGTAATGATTTTAGTTGCTTTGGTGGGTGCAGTGTGCGGTGAGCACGCGTTCTCCTCCCAGCACATCCACAAGTACGATGGTCATCATGAGCCCGTACACCACGGACACCATCATGATTACTATACCCACCCTAAATTCGACTTCGAGTACAAAGTGAGCGACCCCCACACCGGCGACCACAAGAGTCAGCACGAGTCCCGCGACGGTGACGACGTTAAGGGATATTACTCGCTGCACCAACCTGATGGCTCTATCAGACACGTCGACTATCATGGTGATCATCATTCTGGGTTCCATGCTGATGTGAAATACAGTACTCACCATATTATCCCTCATCACCACCATTACTAG

Protein

MVSKVMILVALVGAVCGEHAFSSQHIHKYDGHHEPVHHGHHHDYYTHPKFDFEYKVSDPHTGDHKSQHESRDGDDVKGYYSLHQPDGSIRHVDYHGDHHSGFHADVKYSTHHIIPHHHHY

Uniprot

C0H6V4   C0H6V6   C0H6V5   C0H6W0   C0H6V7   A0A2A4IV03   + More
C0H6V8   A0A2W1C1X5   C0H6U8   G8FVQ2   C0H6V0   A0A2W1C0C0   C0H6V2   C0H6W3   A0A194PXM8   C0H6W1   A0A194PWN4   A0A194QW60   A0A2H1VP60   A0A2H1WGD3   H9ISM7   A0A2H1V127   A0A194QWB8   A0A194R1N8   A0A2W1C1W6   A0A2H1VQS4   A0A2H1V4C4  

Pubmed

19121390    19280704    28756777    26354079   

EMBL

BABH01013349    BR000613    FAA00615.1    BABH01013350    BR000615    FAA00617.1    + More
BR000614    FAA00616.1    BABH01013354    BR000619    FAA00621.1    BABH01013351    BR000616    BR000618    FAA00618.1    FAA00620.1    NWSH01006625    PCG63326.1    BR000617    FAA00619.1    KZ149892    PZC78976.1    BABH01013347    BR000607    FAA00609.1    JN082722    AER27819.1    BR000609    FAA00611.1    PZC78967.1    BR000611    FAA00613.1    BR000622    FAA00624.1    KQ459586    KPI97778.1    BR000620    FAA00622.1    KPI97776.1    KQ461073    KPJ09773.1    ODYU01003629    SOQ42621.1    ODYU01008423    SOQ52006.1    ODYU01000177    SOQ34521.1    KPJ09772.1    KPJ09771.1    PZC78966.1    ODYU01003855    SOQ43136.1    ODYU01000605    SOQ35681.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240   

PRIDE

C0H6W0    C0H6V7    C0H6U8    C0H6V0    C0H6V2    C0H6W1    + More
H9ISM7   

Pfam

PF00379   Chitin_bind_4

Interpro

IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

ProteinModelPortal

C0H6V4   C0H6V6   C0H6V5   C0H6W0   C0H6V7   A0A2A4IV03   + More
C0H6V8   A0A2W1C1X5   C0H6U8   G8FVQ2   C0H6V0   A0A2W1C0C0   C0H6V2   C0H6W3   A0A194PXM8   C0H6W1   A0A194PWN4   A0A194QW60   A0A2H1VP60   A0A2H1WGD3   H9ISM7   A0A2H1V127   A0A194QWB8   A0A194R1N8   A0A2W1C1W6   A0A2H1VQS4   A0A2H1V4C4  

KEGG

100379366    no KO assigned | (RefSeq) CPR112, BmorCPR112; cuticular protein RR-2 motif 112

GO

GO:0042302   GO:0016021   GO:0005761   GO:0006412   GO:0043565   GO:0007155   GO:0005515   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

SignalP

Position:   1 - 22,         Likelihood:  0.985239

 

 

Length:

120

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.26591

Exp number, first 60 AAs:

1.26591

Total prob of N-in:

0.18653

outside

1  -  120

 

 

Pi

389.058074

Theta

214.110567

Tajima's D

2.687712

CLR

0

CSRT

0.959502024898755

Interpretation

Uncertain