SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12987
Pre Gene Modal
BGIBMGA000257
Annotation
cuticular_protein_RR-2_motif_114_precursor_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.102
 

Sequence

CDS
ATGGTTTCTAAGATTGTCTTGTTCGTCGCTTTGGTCGGTGCTGTATCCGCTGAGCACGCCTTCTCCTCCCAACACATCCACAAATATGACGGTCACCATGAACCCGTACACCACGGACACCATCATGATTACTACACTCACCCTAAATTCGACTTCGAGTACAAAGTGAGCGACCCTCACACCGGCGACCACAAGAGTCAGCACGAGTCCCGCGACGGTGACGTCGTCAAGGGGTATTACTCGCTGCACCAACCTGACGGTTCCATCAGACACGTCGACTATCACGGCGATCATCACTCTGGGTTCCATGCTGACGTCAAATACAGCACTCACCATATTGTTCCCCATCATCATCATTACTAA
Protein
MVSKIVLFVALVGAVSAEHAFSSQHIHKYDGHHEPVHHGHHHDYYTHPKFDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSGFHADVKYSTHHIVPHHHHY

Summary

Pfam
PF00379   Chitin_bind_4
Interpro
IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

Ontologies

Topology

SignalP
Position:   1 - 17,         Likelihood:  0.992361
 
 
Length:
120
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.97621
Exp number, first 60 AAs:
1.97621
Total prob of N-in:
0.16040
outside
1  -  120
 
 

Population Genetic Test Statistics

Pi
164.340905
Theta
140.522598
Tajima's D
0.67095
CLR
12.362419
CSRT
0.565371731413429
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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