Silkworm Genome Informatics Database

Gene

KWMTBOMO12986

Pre Gene Modal

BGIBMGA000436

Annotation

cuticular_protein_RR-2_motif_118_precursor_[Bombyx_mori]

Location

Bomo_Chr22(-):6338234-6339019 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.074

CDS

ATGTTCTCAAAGGTGGTGGTTTTGGTCGCGTTGGTGGGTGCGGTGTACGCCGAGCACGCGTTCTCCTCCCAACACATCCACAAGTACGACGGTCACCATGAACCCGTGCACCACGGACACCATCATGATTACTACACCCACCCTAAATTCGACTTCGAGTACAAAGTGAGCGACCCTCACACCGGCGACCACAAGAGTCAGCACGAGTCCCGCGACGGTGACGTCGTCAAGGGATATTACTCGCTGCACCAACCTGATGGTTCTATCAGACATGTCGACTATCATGGTGATCATCATTCTGGGTTCCACGCTGATGTGAAATATAGTACTCATCATATTGTACCTCATCACCATCACTACTAA

Protein

MFSKVVVLVALVGAVYAEHAFSSQHIHKYDGHHEPVHHGHHHDYYTHPKFDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSGFHADVKYSTHHIVPHHHHY

Uniprot

C0H6W0 C0H6V8 A0A2A4IV03 C0H6V6 C0H6V5 C0H6V4 + More
C0H6V7 A0A2H1WGD3 G8FVQ2 A0A2W1C0C0 A0A2W1C1X5 C0H6U8 C0H6V0 C0H6W1 C0H6V2 H9ISM7

Pubmed

19121390 19280704 28756777

EMBL

BABH01013354 BR000619 FAA00621.1 BABH01013351 BR000617 FAA00619.1 + More
NWSH01006625 PCG63326.1 BABH01013350 BR000615 FAA00617.1 BABH01013349 BR000614 FAA00616.1 BR000613 FAA00615.1 BR000616 BR000618 FAA00618.1 FAA00620.1 ODYU01008423 SOQ52006.1 JN082722 AER27819.1 KZ149892 PZC78967.1 PZC78976.1 BABH01013347 BR000607 FAA00609.1 BR000609 FAA00611.1 BR000620 FAA00622.1 BR000611 FAA00613.1

Proteomes

UP000005204 UP000218220

PRIDE

C0H6W0 C0H6V7 C0H6U8 C0H6V0 C0H6W1 C0H6V2 + More
H9ISM7

Pfam

PF00379 Chitin_bind_4

Interpro

IPR000618 Insect_cuticle + More
IPR031311 CHIT_BIND_RR_consensus

ProteinModelPortal

C0H6W0 C0H6V8 A0A2A4IV03 C0H6V6 C0H6V5 C0H6V4 + More
C0H6V7 A0A2H1WGD3 G8FVQ2 A0A2W1C0C0 A0A2W1C1X5 C0H6U8 C0H6V0 C0H6W1 C0H6V2 H9ISM7

KEGG

100379362 no KO assigned | (RefSeq) CPR116, BmorCPR116; cuticular protein RR-2 motif 116

GO

GO:0042302 GO:0005761 GO:0006412 GO:0043565 GO:0007155 GO:0005515 GO:0008237 GO:0008152 GO:0016491 GO:0015930

SignalP

Position: 1 - 17, Likelihood: 0.989362

Length:

120

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.25222

Exp number, first 60 AAs:

4.25222

Total prob of N-in:

0.24306

outside

1 - 120

Pi

147.410969

Theta

132.44266

Tajima's D

0.549667

CLR

105.629249

CSRT

0.530623468826559

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree