Silkworm Genome Informatics Database

Gene

KWMTBOMO12984

Pre Gene Modal

BGIBMGA000438

Annotation

cuticular_protein_RR-2_motif_123_precursor_[Bombyx_mori]

Location

Bomo_Chr22(-):6303633-6305339 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.06 Nuclear Reliability : 1.471

CDS

ATGTTAATTCATCAGTTCCACCGCGGAAGTCGAGGAAGAAAGAACAACATGCTAGCTAAAATCTTAGTGATTGCCGTCGCCGTGGCAGTGGTTTCCTGTCAAGAGAAGCCGTATAATCTGAAGAAGCTTTTTCAACAAGAACAAGCCAAGGAATACAAGCATCGCCCTTACGAGCACATTCATCCATCGTTTCCTTTAAAGTCCTTCCAAGAACCTGCACCCATCAGTGAAGAGCAGTACCAAGAAGCTCAAGCTAGTCCCGCTGAACAAGCTTACGAAAAGCCGCAAGAGAGCTACTCCCCTGCCTACTCTTCTCAGAGCATCATCCATCATGCTGCAAGCGGTCAGCAAGATTCCCAAGAGAACAGCGGTGAACGTGGGATTTATCAATACGTGCAGGAGCAAAACGAAGATGTGAAAGTACGCCAACCAACCACTCACAAATACCAAGGAGTACATTACCCGGTGCATTATCCTGCTCCAGTACAACACGAGGCTCCTGCGGCAAAACCAGTATACAAGCCCCAAGTTCATTACACTCGGCCGCAAGAAGGCTTTAGCTTCCACCGTGGAGTTCATCTTGAACAAGCCCCTGTCTATCAGCAGACCGAAGGACATGCTCACGAATCACACGATGAACCCATTGACTATTACGCCTACCCTAAATATCAATATGAGTACAAAGTTGAGGACCCTCACACCGGAGACAACAAGTTCCAACACGAGATCCGTGATGGCGACGTCGTGAAGGGCGTGTACGGTCTTCACGAGGCTGATGGCTCAGTTCGGACTGTTGAATACAGTTCAGACAAGCACAAAGGATTCAGCGCCATTGTCAAGCATTCAGCTCCTGGTCAACATGTTCACATTGAGAGTCATCATGAAAACTAA

Protein

MLIHQFHRGSRGRKNNMLAKILVIAVAVAVVSCQEKPYNLKKLFQQEQAKEYKHRPYEHIHPSFPLKSFQEPAPISEEQYQEAQASPAEQAYEKPQESYSPAYSSQSIIHHAASGQQDSQENSGERGIYQYVQEQNEDVKVRQPTTHKYQGVHYPVHYPAPVQHEAPAAKPVYKPQVHYTRPQEGFSFHRGVHLEQAPVYQQTEGHAHESHDEPIDYYAYPKYQYEYKVEDPHTGDNKFQHEIRDGDVVKGVYGLHEADGSVRTVEYSSDKHKGFSAIVKHSAPGQHVHIESHHEN

Uniprot

C0H6W5 A0A194PWM9 A0A194QWC3 I4DID6 A0A0L7KHQ9 A0A212FKA8 + More
Q9BPR2 C0H6W4 H9IT58

Pubmed

19280704 26354079 22651552 26227816 22118469 11483438 + More
19121390

EMBL

BR000624 FAA00626.1 KQ459586 KPI97771.1 KQ461073 KPJ09777.1 + More
AK401054 BAM17676.1 JTDY01009813 KOB62611.1 AGBW02008093 OWR54166.1 AB047487 BAB32484.1 BR000623 FAA00625.1 BABH01013354

Proteomes

UP000053268 UP000053240 UP000037510 UP000007151 UP000005204

PRIDE

C0H6W5 Q9BPR2 C0H6W4 H9IT58

Pfam

PF00379 Chitin_bind_4

Interpro

IPR000618 Insect_cuticle + More
IPR031311 CHIT_BIND_RR_consensus

ProteinModelPortal

C0H6W5 A0A194PWM9 A0A194QWC3 I4DID6 A0A0L7KHQ9 A0A212FKA8 + More
Q9BPR2 C0H6W4 H9IT58

KEGG

100379356 no KO assigned | (RefSeq) CPR123, BmorCPR123; cuticular protein RR-2 motif 123

GO

GO:0042302 GO:0005761 GO:0006412 GO:0043565 GO:0007155 GO:0005515 GO:0008237 GO:0008152 GO:0016491 GO:0015930

Length:

296

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.00717

Exp number, first 60 AAs:

5.00717

Total prob of N-in:

0.25970

outside

1 - 296

Pi

257.93104

Theta

177.807441

Tajima's D

1.203322

CLR

0.014687

CSRT

0.716114194290285

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics