Silkworm Genome Informatics Database

Gene

KWMTBOMO12983

Pre Gene Modal

BGIBMGA000251

Annotation

cuticular_protein_RR-2_motif_125_precursor_[Bombyx_mori]

Location

Bomo_Chr22(+):6277380-6279205 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.355

CDS

ATGCACAAGCATGCAACGAACTGTCACAATGGAAAACTGAGTTATTCGTTCAGCTACGGCGTGGCAGATGCTCGAACTGGAGACGTGAAAGCAGTGTGGGAGGCCAAAGAAGGTGACACTGTCAAAGGTCAATACAGCGTCTTAGAAGCAGACGGTTCAACAAGAACAGTCGAGTATTCAGCCGGTCCAAATTCTGGTTTTAATGCAATAGTGAGCAATGATAATGATTTCCTTCCCACAAACGAAATTGAAAGTAAGAAAACCGGGAGAAGCCTTATCGAAGACAAGACTATGAGAGACTATGGCAACTATTATGATTTTCCTGAAGACCCCGATGATGAATATTACGAAAAGAAAAAAACGAAACGTCCTTTGGATTCCCATAGAGAACATTCCAAAAACAAAAAACCTAGGTATCCTTTTGATTTGGAACCCAGTGAATATACACACAGTATTAGCATTAAGCATCCTCGCGATGAAGGTTCAGAAAGCGAAGCCCACAGTCATTTCGGTTACAGTTTCGACCCGAACTGCAAAACCAAACCAAAAAAAGGAAGCCATGATACCAATTCATATTCCAATGTGGTAGATCTAGAGACGAATCCGAAATATCCTTTATATTCTCAAGATTATTTTCGTGATAAACATCCTGACTCTTCAAGTAATTATGACTTTGAAAAATTAAGGCCATTTAGTAGTTACAGGCCCCACAAATACGAGGAAATAACATTGAAACCTCCTTTTTCGACAAGATATACGAGCCCTGTTATTCCTGATTTAGCGTATTCAAGTGAAAAAATGTATCCTGATGATATTCCATTGCGGCCGAAGAAGAAACATAGGCCTCACAAAGTACCAGAATCCCATTTTGGTGATGATTTAGATGACTACGTTTTAGTACCAAAAAAGAAGTACAAGCCCCCAAGGCTGGTAGAGCCACACGAGTTTAGACCAGAGCCTGAAGATGACTACGAACGGCCCCACCGTGGAAGCAGTTTCGATGATATACATGACGATCGACATCGGCATCCACCGAGGGGACCTCAAACGGAAATCGTTCGGAAAATCGTGAAGAAACGACGTCCGGTTATTAATTTATTAGATGTTTTTGACATTTAA

Protein

MHKHATNCHNGKLSYSFSYGVADARTGDVKAVWEAKEGDTVKGQYSVLEADGSTRTVEYSAGPNSGFNAIVSNDNDFLPTNEIESKKTGRSLIEDKTMRDYGNYYDFPEDPDDEYYEKKKTKRPLDSHREHSKNKKPRYPFDLEPSEYTHSISIKHPRDEGSESEAHSHFGYSFDPNCKTKPKKGSHDTNSYSNVVDLETNPKYPLYSQDYFRDKHPDSSSNYDFEKLRPFSSYRPHKYEEITLKPPFSTRYTSPVIPDLAYSSEKMYPDDIPLRPKKKHRPHKVPESHFGDDLDDYVLVPKKKYKPPRLVEPHEFRPEPEDDYERPHRGSSFDDIHDDRHRHPPRGPQTEIVRKIVKKRRPVINLLDVFDI

Uniprot

C0H6W7 A0A2A4J9D7 A0A2H1VNN8 A0A0L7LA97 A0A3S2M6E0 A0A212F8Y9 + More
A0A194QW66 A0A194Q2Y6

Pubmed

19121390 19280704 26227816 22118469 26354079

EMBL

BABH01013357 BR000626 FAA00628.1 NWSH01002544 PCG68013.1 ODYU01003536 + More
SOQ42440.1 JTDY01001977 KOB72418.1 RSAL01000021 RVE52457.1 AGBW02009657 OWR50215.1 KQ461073 KPJ09778.1 KQ459586 KPI97770.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000283053 UP000007151 UP000053240 + More
UP000053268

PRIDE

C0H6W7

Pfam

PF00379 Chitin_bind_4

Interpro

IPR031311 CHIT_BIND_RR_consensus + More
IPR000618 Insect_cuticle

ProteinModelPortal

C0H6W7 A0A2A4J9D7 A0A2H1VNN8 A0A0L7LA97 A0A3S2M6E0 A0A212F8Y9 + More
A0A194QW66 A0A194Q2Y6

KEGG

100379354 no KO assigned | (RefSeq) CPR125, BmorCPR125; cuticular protein RR-2 motif 125

GO

GO:0042302 GO:0005761 GO:0006412 GO:0043565 GO:0007155 GO:0005515 GO:0008237 GO:0008152 GO:0016491 GO:0015930

Length:

372

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00071

Exp number, first 60 AAs:

0.00071

Total prob of N-in:

0.06890

outside

1 - 372

Pi

418.985015

Theta

237.546489

Tajima's D

2.422108

CLR

0

CSRT

0.937953102344883

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics