SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12974
Pre Gene Modal
BGIBMGA000439
Annotation
PREDICTED:_band_7_protein_AGAP004871-like_isoform_X1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.671
 

Sequence

CDS
ATGGATTTCGGTTGCCACGACAAGGACTCAGGGGAAGTGGAGTGCTACTTCGAAATACATTGCGATACGGGTACTTCTTGCGCTATCACGATACAAATGCCGAACCCAGAAGCCGTTGGATGTGTAGAACGATTTGCAACTTTACTGTCATATCTACTTGTCATCATCACCTTCCCTTTTTCGTTATTTGAATGTTTTAAGGTTGTGCAAGAATTTGAAAGAGCTGTAATCTTCAGACTAGGCAGATTAAGGAAAGGCGGCGCGAGAGGCCCAGGACTATTCTTTGTTCTTCCCTGCATAGACACTTATAGAAAAGTAGATCTACGAACGGTTTCGTTTGACGTACCACCACAAGAGGTACTAACGCGAGATTCTGTGACAGTGGCAGTGGACGCTGTAGTGTATTACCGAATCAAAGAACCCTTAAATGCAGTGGTGAGAGTTGCAGACTATAGCGCGTCAACAAGACTCTTGGCCGCTACAACATTAAGGAATGTTCTTGGAATGAGGGATCTAGCGCAACTCCTCTCTGACAGGGAAGCAATCAGTCACATGATGCAAGCTAGCCTGGATGAGGCCACGGAGCCTTGGGGTGTCGAAGTAGAAAGAGTTGAAATTAAAGACGTCCGACTGCCCGTGCAGCTACAGAAGGCCATGGCAGCAGAAGCTGAGGCGGATCGTGAAGCAAGAGCGAAAATCATTGCCGCCGAAGGAGAAATTAAAGCATCAAAAGCATTGAAGGAAGCATCACTTGTCATGATCGACAATCCTATGGCCTTACAGCTGCGCTACCTGCAGTCTTTGAGCTCTATATCAGCAGAGAAGAATTCCACGATAATCTTTCCATTCCCTATGGATTTCTTGAAAGCATTTTTGGGAGGAGCCGGACCAAGTACAACGCACCAACCAAGCGTACAAATGACACAATCATTACCAATATAG
Protein
MDFGCHDKDSGEVECYFEIHCDTGTSCAITIQMPNPEAVGCVERFATLLSYLLVIITFPFSLFECFKVVQEFERAVIFRLGRLRKGGARGPGLFFVLPCIDTYRKVDLRTVSFDVPPQEVLTRDSVTVAVDAVVYYRIKEPLNAVVRVADYSASTRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPVQLQKAMAAEAEADREARAKIIAAEGEIKASKALKEASLVMIDNPMALQLRYLQSLSSISAEKNSTIIFPFPMDFLKAFLGGAGPSTTHQPSVQMTQSLPI

Summary

EMBL
ODYU01005723    SOQ46857.1    KQ461073    KPJ09787.1    RSAL01000021    RVE52466.1    + More
BABH01013375    BABH01013376    AXCN02000227    AXCM01005935    LNIX01000003    OXA58444.1    CVRI01000001    CRK86418.1    GDRN01079140    JAI62455.1    GALX01003814    JAB64652.1    GDRN01079145    JAI62453.1    CH477800    EAT36089.1    GAPW01002697    JAC10901.1    GGFK01009084    MBW42405.1    AAAB01008904    EAA09668.5    UFQS01000071    UFQT01000071    SSW99005.1    SSX19387.1    JXUM01037796    KQ561142    KXJ79578.1    GGFL01002308    MBW66486.1    EGK97227.1    GFDL01000320    JAV34725.1    GFDF01001921    JAV12163.1    GFDF01001923    JAV12161.1    GDHF01031126    JAI21188.1    GFDF01001920    JAV12164.1    GBXI01009202    JAD05090.1    ADMH02001528    ETN62172.1    GDHF01001427    JAI50887.1    GAKP01004426    JAC54526.1    GEDC01031713    JAS05585.1    GAMC01001373    JAC05183.1    KK853400    KDR07856.1    EGK97226.1    APGK01055731    APGK01055732    KB741269    KB632330    ENN71473.1    ERL92552.1    GECU01034662    GECU01033952    GECU01017617    GECU01016518    GECU01014700    GECU01010920    GECU01007826    JAS73044.1    JAS73754.1    JAS90089.1    JAS91188.1    JAS93006.1    JAS96786.1    JAS99880.1    GECU01031380    JAS76326.1    BT127877    AEE62839.1    CH933810    EDW07428.2    ATLV01017130    ATLV01017131    ATLV01017132    ATLV01017133    ATLV01017134    KE525156    KFB41786.1    CH940651    EDW65958.2    JRES01001557    KNC22068.1    GBHO01038052    GBRD01003697    GBRD01003668    GBRD01003666    JAG05552.1    JAG62124.1    GEBQ01006748    JAT33229.1    GDIP01175590    JAJ47812.1    JXJN01006953    GBHO01038053    GBRD01011006    GBRD01011005    GBRD01003669    JAG05551.1    JAG54818.1    CH916370    EDV99792.1    KQ414934    KOC59294.1    GDIP01175941    JAJ47461.1    GDIP01175943    JAJ47459.1    DS235824    EEB17854.1    GDIQ01241408    JAK10317.1    GFTR01004299    JAW12127.1    GDIP01175636    JAJ47766.1    KK854455    PTY15995.1    GDIP01175944    JAJ47458.1    GECL01002540    JAP03584.1    CH964239    EDW82352.2    CCAG010016654    KA645629    AFP60258.1    GDIP01175940    JAJ47462.1    ACPB03005770    GBGD01002562    JAC86327.1    GDKW01002687    JAI53908.1    GEMB01003474    JAR99741.1    GDIP01175882    JAJ47520.1    GDIQ01240155    JAK11570.1    GDIP01175883    JAJ47519.1    GBBI01000203    JAC18509.1    NCKU01004031    NCKU01004020    NCKU01002970    NCKU01002969    RWS06541.1    RWS06561.1    RWS08438.1    RWS08439.1    CAEY01000333    GDIP01175637    JAJ47765.1    GDIQ01126895    JAL24831.1    GDIP01228035    JAI95366.1    GDIQ01059022    JAN35715.1    GDIQ01266386    JAJ85338.1    AE014298    AHN59898.1    HACA01018776    CDW36137.1    GDIP01175582    GDIP01175581    JAJ47820.1    GDIP01175580    JAJ47822.1    GDIQ01266387    JAJ85337.1    CH480823    EDW56116.1    AY113423    AAM29428.1    AAS65408.1   
Pfam
PF01145   Band_7
Interpro
IPR001972   Stomatin_fam        + More
IPR001107   Band_7       
IPR036013   Band_7/SPFH_dom_sf       
IPR018080   Band_7/stomatin-like_CS       
SUPFAM
SSF117892   SSF117892       
PDB
4FVF     E-value=5.48656e-40,     Score=412

Ontologies

Topology

Length:
313
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
13.72507
Exp number, first 60 AAs:
10.22025
Total prob of N-in:
0.41111
POSSIBLE N-term signal
sequence
outside
1  -  313
 
 

Population Genetic Test Statistics

Pi
269.539655
Theta
200.451174
Tajima's D
1.630055
CLR
0.324628
CSRT
0.813459327033648
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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