Gene

KWMTBOMO12972  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000440

Annotation

PREDICTED:_39S_ribosomal_protein_L47?_mitochondrial_[Papilio_machaon]

Location

Bomo_Chr22(-):6048199-6048995      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.211

CDS

ATGCGATCACAAAAATCTATCAACACAGCAGCAGCTTGTATTGTTAAAAGGGATTTCCACACAACCAAACCTACGCAAGATTTAATGGAATTCTTTGATGCAAAGAAGAATTGGCCTGAAACTAATATAAGAGTAGGAAGAGCTTGGAAACTGGACGAGTTGCGATTAAAGTCCAATACAGATTTGCACAAATTGTGGTATGTACTTTTGAAAGAACGTAATATGCTTTACACTATGGAACATGAGTGCAACGAAAGGGTTCGACTGTTCCCAAATCCAGAAAGAATTGACAAAGTTGAAGAATCAATGAATAACATAGAATCGGTTATTAGAGAACGTAATATTGCTTACTACAAGCTTGAAACAGGTGAAACTGGAGAACGCCCTGTGAAAGATGTTATAAATCTTATAGGAATGCCAGAAAAGTATCAACCGTCAGAATACGATACACCTAAATTTATGAACACACGTTGGGTAAGACCATATCTAAAACATGGCTTCATCAACAGTTTGGCAGTAAAAAAGTTTAGAAGATTGTATAATGAAAAAATCCATAGCGAAGTGAGGAAAGCACACAATAGAGACTTTAACCATGTCCAACATTTACTCAAACGTTTCCCTAACCTTGATATGGATACTTTAAAAGCAGAATATCCAAATGTTGATATTGAAAAAGCTAAAAGAACAAAGAAATCAAGAGGACATTTTATGCCAACTTATTAA

Protein

MRSQKSINTAAACIVKRDFHTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGMPEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEKAKRTKKSRGHFMPTY

Uniprot

H9IT61   A0A3S2NJC8   A0A2H1W2X7   A0A194QXV2   A0A0L7KUI9   A0A1E1WEY2   + More
A0A212EP57   A0A0L7K3R1   A0A2S2P397   C4WTX8   A0A2H8THH2   A0A195FY92   A0A1I8Q4N9   A0A0T6AXP9   W8CDA3   A0A2J7PYW7   A0A2S2QC63   A0A1I8M5A2   A0A0K8TZQ4   A0A195EEY3   A0A0C9RTK5   A0A034WS76   A0A1A9YCT8   A0A151I3T4   F4WNW9   A0A1B0BUH4   N6THP1   A0A0M4F5F3   A0A0K8TSF8   A0A158NHD3   J3JUR9   D3TPB4   K7J6U4   A0A1B6HP21   A0A067RFZ5   A0A1B0G9L4   B4M426   A0A1A9V7X8   B4JFU6   A0A1A9ZZZ7   B4KB62   A0A151IAG0   A0A151X8P4   A0A1A9WH30   A0A0L0CM91   E2AMP1   A0A2M4BWZ0   W5J9A9   A0A2M4ASS7   B4QWL5   T1PAG3   E2B9C3   B4HKC5   A0A1Q3FBF6   A0A182FAZ7   B3NZR2   Q8T3V6   A0A3L8DHT0   A0A182SK16   A0A182LQK1   Q7QK90   A0A1Y9HAL9   A0A182Y4M8   A0A0P8YHS8   A0A182VEV8   B3M1M7   A0A088AIJ6   A0A182ULE6   A0A069DY66   A0A182NMS2   A0A0N8ES33   B4NJ71   A0A310SNF0   B4GFJ6   B5DYC6   B4PUP7   A0A1W4V4Z8   A0A1B6MMC2   A0A0R1E1Y3   B0WFJ0   A0A182J168   A0A182X367   A0A224XQQ3   A0A182K0E3   A0A182RH14   A0A2A3EK22   E9J147   A0A182MH82   V9IL50   A0A154PC18   A0A3B0JQV5   A0A182GHQ5   A0A182VRX5   R4G7R5   D6WNP0   A0A0V0G6T1   A0A182NZF7   A0A0A9W606   U5EIR2  

Pubmed

19121390    26354079    26227816    22118469    24495485    25315136    + More
25348373    21719571    23537049    26369729    21347285    22516182    20353571    20075255    24845553    17994087    26108605    20798317    20920257    23761445    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    30249741    20966253    12364791    14747013    17210077    25244985    26334808    26999592    15632085    17550304    21282665    26483478    18362917    19820115    25401762    26823975   

EMBL

BABH01013381    RSAL01000021    RVE52471.1    ODYU01005723    SOQ46854.1    KQ461073    + More
KPJ09790.1    JTDY01005728    KOB66689.1    GDQN01005500    JAT85554.1    AGBW02013536    OWR43256.1    JTDY01012377    KOB52283.1    GGMR01011069    MBY23688.1    ABLF02036299    AK340812    BAH71348.1    GFXV01001761    MBW13566.1    KQ981208    KYN44804.1    LJIG01022569    KRT79878.1    GAMC01002296    GAMC01002292    JAC04260.1    NEVH01020342    PNF21502.1    GGMS01006136    MBY75339.1    GDHF01032578    JAI19736.1    KQ979039    KYN23419.1    GBYB01012075    JAG81842.1    GAKP01001912    JAC57040.1    KQ976475    KYM83900.1    GL888239    EGI64127.1    JXJN01020688    APGK01037395    KB740948    KB632288    ENN77318.1    ERL91536.1    CP012526    ALC47087.1    GDAI01000532    JAI17071.1    ADTU01015612    BT126984    AEE61946.1    EZ423266    ADD19542.1    AAZX01001299    GECU01031277    JAS76429.1    KK852660    KDR19128.1    CCAG010022855    CH940652    EDW59387.1    CH916369    EDV93577.1    CH933806    EDW15766.1    KQ978218    KYM96446.1    KQ982409    KYQ56658.1    JRES01000301    KNC32584.1    GL440840    EFN65309.1    GGFJ01008438    MBW57579.1    ADMH02002017    ETN59978.1    GGFK01010512    MBW43833.1    CM000364    EDX13619.1    KA645684    AFP60313.1    GL446493    EFN87704.1    CH480815    EDW42875.1    GFDL01010131    JAV24914.1    CH954181    EDV49772.1    AY089479    AE014297    AAL90217.1    AAO41525.1    QOIP01000008    RLU19752.1    AAAB01008799    EAA03797.3    AXCN02001208    CH902617    KPU80805.1    EDV44357.1    GBGD01002570    JAC86319.1    GDUN01000586    JAN95333.1    CH964272    EDW83864.2    KQ760869    OAD58791.1    CH479182    EDW34381.1    CM000070    EDY68346.1    CM000160    EDW96664.2    GEBQ01002889    JAT37088.1    KRK03280.1    DS231918    EDS26258.1    GFTR01004268    JAW12158.1    KZ288222    PBC32048.1    GL767553    EFZ13459.1    AXCM01001303    JR050209    AEY61201.1    KQ434856    KZC08750.1    OUUW01000008    SPP84557.1    JXUM01064333    KQ562293    KXJ76220.1    ACPB03000302    GAHY01002262    JAA75248.1    KQ971342    EFA03754.1    GECL01002469    JAP03655.1    GBHO01043309    GBRD01004831    GDHC01007873    JAG00295.1    JAG60990.1    JAQ10756.1    GANO01002529    JAB57342.1   

Proteomes

UP000005204    UP000283053    UP000053240    UP000037510    UP000007151    UP000007819    + More
UP000078541    UP000095300    UP000235965    UP000095301    UP000078492    UP000092443    UP000078540    UP000007755    UP000092460    UP000019118    UP000030742    UP000092553    UP000005205    UP000002358    UP000027135    UP000092444    UP000008792    UP000078200    UP000001070    UP000092445    UP000009192    UP000078542    UP000075809    UP000091820    UP000037069    UP000000311    UP000000673    UP000000304    UP000008237    UP000001292    UP000069272    UP000008711    UP000000803    UP000279307    UP000075901    UP000075882    UP000007062    UP000075886    UP000076408    UP000007801    UP000075903    UP000005203    UP000075902    UP000075884    UP000007798    UP000008744    UP000001819    UP000002282    UP000192221    UP000002320    UP000075880    UP000076407    UP000075881    UP000075900    UP000242457    UP000075883    UP000076502    UP000268350    UP000069940    UP000249989    UP000075920    UP000015103    UP000007266    UP000075885   

PRIDE

H9IT61   

Pfam

PF06984   MRP-L47        + More
PF05405   Mt_ATP-synt_B

Interpro

IPR038340   MRP-L47_sf        + More
IPR010729   Ribosomal_L47_mit       
IPR036049   Ribosomal_L29/L35_sf       
IPR013837   ATP_synth_F0_suB       
IPR008688   ATP_synth_Bsub_B/MI25       

SUPFAM

SSF46561   SSF46561       

Gene 3D

1.20.1280.190    

ProteinModelPortal

H9IT61   A0A3S2NJC8   A0A2H1W2X7   A0A194QXV2   A0A0L7KUI9   A0A1E1WEY2   + More
A0A212EP57   A0A0L7K3R1   A0A2S2P397   C4WTX8   A0A2H8THH2   A0A195FY92   A0A1I8Q4N9   A0A0T6AXP9   W8CDA3   A0A2J7PYW7   A0A2S2QC63   A0A1I8M5A2   A0A0K8TZQ4   A0A195EEY3   A0A0C9RTK5   A0A034WS76   A0A1A9YCT8   A0A151I3T4   F4WNW9   A0A1B0BUH4   N6THP1   A0A0M4F5F3   A0A0K8TSF8   A0A158NHD3   J3JUR9   D3TPB4   K7J6U4   A0A1B6HP21   A0A067RFZ5   A0A1B0G9L4   B4M426   A0A1A9V7X8   B4JFU6   A0A1A9ZZZ7   B4KB62   A0A151IAG0   A0A151X8P4   A0A1A9WH30   A0A0L0CM91   E2AMP1   A0A2M4BWZ0   W5J9A9   A0A2M4ASS7   B4QWL5   T1PAG3   E2B9C3   B4HKC5   A0A1Q3FBF6   A0A182FAZ7   B3NZR2   Q8T3V6   A0A3L8DHT0   A0A182SK16   A0A182LQK1   Q7QK90   A0A1Y9HAL9   A0A182Y4M8   A0A0P8YHS8   A0A182VEV8   B3M1M7   A0A088AIJ6   A0A182ULE6   A0A069DY66   A0A182NMS2   A0A0N8ES33   B4NJ71   A0A310SNF0   B4GFJ6   B5DYC6   B4PUP7   A0A1W4V4Z8   A0A1B6MMC2   A0A0R1E1Y3   B0WFJ0   A0A182J168   A0A182X367   A0A224XQQ3   A0A182K0E3   A0A182RH14   A0A2A3EK22   E9J147   A0A182MH82   V9IL50   A0A154PC18   A0A3B0JQV5   A0A182GHQ5   A0A182VRX5   R4G7R5   D6WNP0   A0A0V0G6T1   A0A182NZF7   A0A0A9W606   U5EIR2  

PDB

6NU3     E-value=2.18893e-27,     Score=301

KEGG

101742809    K17428 large subunit ribosomal protein L47 | (RefSeq) 39S ribosomal protein L47, mitochondrial

GO

GO:0005761   GO:0006412   GO:0003735   GO:0032543   GO:0005762   GO:0000276   GO:0015986   GO:0015078   GO:0043565   GO:0007155   GO:0005515   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR21183   PTHR12733  

Length:

240

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0009

Exp number, first 60 AAs:

0

Total prob of N-in:

0.26493

outside

1  -  240

 

 

Pi

174.3674

Theta

190.782515

Tajima's D

-0.673386

CLR

0.605557

CSRT

0.208039598020099

Interpretation

Uncertain