Silkworm Genome Informatics Database

Gene

KWMTBOMO12966

Pre Gene Modal

BGIBMGA000244

Annotation

PREDICTED:_calcium_homeostasis_endoplasmic_reticulum_protein_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr22(+):5815065-5823002 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.797

CDS

ATGGAACTGCCACAGCCACCGCAAGATCAAGATCTCCGCAACATAATCGACAAATTAGCGCAATTCGTCGCAAGAAATGGACCGGAATTTGAGAAGATGACCAAGAACAAACAAAAAAATAACCCAAAATTTAGTTTCCTGTATGGCGGCGAGTACTTCAACTACTATCAATACAAAGTGACGACAGAACAAGCAATTCTAAAGCAAACGGCCGGTGGGCAGGCGGCATCCGCTCCCGCCGGGGCCTATATGGCACAGAACAGGCAATATGTAATGCCCCAACAGGCCAGCGCGACGCCTGCTCAGCTGGGTCTAGCGGCCTCGATGGCGGCGGCACCTGTACTTCAGCAGTGGCTTGCAGTCAACTCTGCCCCGCCTCCCCTTCCTCAGCACCCACAAGAAATCGACAGCATCACAACACAGATCAATGTGCTGAAAGAACAGATTACTCAGTCAGAAAATAATCTAAATGCTCAACATGCTGTTTTGATACAACAGCAGCAAGTGAAGATCAATGAGCTTGTCAGCAAGGCACAGATGGAGTCTTTACAGATAATGGCTGATGAGAACAACATCAATCTTAGTGAACTTGACAATATCCTACAGCCAATAATAGACAGTTGCACTAAGGACAGTATTTCTTCAGGAAAGGGTTGGATACTTCAACATGCTACATCCCATGATGCTGGCAAAGTCATATCTCAACACCTGCTTAGAAAAGTCACTCAAACTGGTGCTGCTTTTACTCAGAAACTACACATCATTTACCTTGTAAATGATGTACTCCATCATTGTGCACGCAAAAACGCAGAAGATCTCAAGAAAAATTTGGAAAATGTGGTGGTTCCAATGTTTTGCAATGCCAGTATAGCGGTGACAGAGGAGCAGGAAGCTAAGTTAAACAAGTTACTTCGTCTTTGGGAGTCCAAGTCTAACTATTTCGAGACAGCAGTAATTGAAAAAATGAAGAGTCCCACCAGCTCCTACCAAGATTATCAGAACGCCTTAATCTCACAGCATGCGAATGCTATTTCGCATCTGACACAGCAAACTAAATCTACTTTTGAGAATTATCAATCACAACACCAAGCTTTTGTTGGTCACACAATGCAACAAATACAACAATTGGAAATGCAAAAACATGCCCTTGAGATGCAAAAAACTCAAGAAAACAATGAAAATGAGCAGCAAAGTAATATGGGAAATTTTCATAATAGTAATTTCAGTGATATAGGATATCCACAGATGGGTGGCTATGATCAAAACTTTAATGCAAACTCAAATAGTCAGCAATATGGTAGTGAAAGTGGGGATAATTACCCAACAAACAACAGTATCAGTGGAAATGAGAATAGTTATGATAGCCAAATATTTGAACAAATAGCAAAGCAAAAGAAAGAAAATATTGAAGATCCTGATTTATCTAATCTACCAAATGTAAACTTCTCCGTACCACCACCAGGCTTCAAGCCTCTTGATAATGCACCACTGCAGGCTTTCCAAAATGGTCTTCCTGACCTTAGCAAACCTCCACCAGGTTTTCCACCATTAATTCCTGAAATTAACAATGAAGATTTGATGCCTTCAGTACCATACTTCGAACTCCCCGCTGGTTTAATGGTTCCACTTATTATGTTGGAAGATGACAACTATAAACCATTAGACCCGGACAGAATTCGTTTACCACCACCAGCACCTCCAAATGATAGACTTTTAGCAGCCGTTGATGCATTCTTTGCCTCGCCAAATCATGAACGTCCACGAGATAATGAAGGGTGGGAGAAATTAGGATTATACGAGTATTACAAAGCAAAAAATTCAGCAAGAAAGATGAAAGAAGACGCTATAGCGCAAGGTTATAGACAAAAATCGAAATCACCCAGTCCAATTCCTAAGGATTTACAGAAACAACCTACTCCACCAGGAAGAAGATACAGATCACGGAGTAAAACACCCGAACCTAATATACCAATGAAGTCACGATCACGTTCACAGTCACCTAAAAGAAAACACAATATGTGGAAAAGAGAGAGAGAAAGTGCAAGAGAAGGACGAAGACGTACCCGGTCGAGGTCAAGATCAAAATCACGTAGTAATTCCCGCGAACGAGAAAGACACAGAGACTCACCAAGATCGCGCCGTGTGGAACGCTCTAGATCGCCAACACCACCTAGTTTTCTTGGTGGAGCATATCCCACGACTTCCGGAGGTATAGATTCTACAAATAAAGGGCATCAAATGCTACAAAAGATGGGTTGGAGTGCAGGGGGCCTTGGTGCTTCAGGCCAGGGTATTGCAGAACCTATCAGTGGCGGTTTCGTAAGAGATAGACAAGACCAATATAAAGGTGTTGGCGTCAGTTTGAATGATCCCTATGAAAACTTCAGAAAAAACAAAGGTGCAGCGTTCATCAGCAGAATGAAGGAAAGAGCCCTTGAACGTTCTTCATGA

Protein

MELPQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQAILKQTAGGQAASAPAGAYMAQNRQYVMPQQASATPAQLGLAASMAAAPVLQQWLAVNSAPPPLPQHPQEIDSITTQINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADENNINLSELDNILQPIIDSCTKDSISSGKGWILQHATSHDAGKVISQHLLRKVTQTGAAFTQKLHIIYLVNDVLHHCARKNAEDLKKNLENVVVPMFCNASIAVTEEQEAKLNKLLRLWESKSNYFETAVIEKMKSPTSSYQDYQNALISQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQKTQENNENEQQSNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLSNLPNVNFSVPPPGFKPLDNAPLQAFQNGLPDLSKPPPGFPPLIPEINNEDLMPSVPYFELPAGLMVPLIMLEDDNYKPLDPDRIRLPPPAPPNDRLLAAVDAFFASPNHERPRDNEGWEKLGLYEYYKAKNSARKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIPMKSRSRSQSPKRKHNMWKRERESAREGRRRTRSRSRSKSRSNSRERERHRDSPRSRRVERSRSPTPPSFLGGAYPTTSGGIDSTNKGHQMLQKMGWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVSLNDPYENFRKNKGAAFISRMKERALERSS

Similarity

Belongs to the mitochondrial carrier (TC 2.A.29) family.

Uniprot

H9ISL7 A0A2H1VZP0 A0A194Q7P0 A0A2A4J9I3 A0A3S2NNV7 A0A212F4N4 + More
A0A194QW83 A0A0L7LD58 E0VUQ4 N6TVX5 N6TQ60 A0A1B0C8F5 U4U3F7 A0A2S2P2P7 J9JSK0 A0A1W2WCX2 A0A1W3JPP8

Pubmed

19121390 26354079 22118469 26227816 20566863 23537049 + More

EMBL

BABH01013398 ODYU01005445 SOQ46309.1 KQ459324 KPJ01538.1 NWSH01002266 + More
PCG68745.1 RSAL01000021 RVE52477.1 AGBW02010334 OWR48694.1 KQ461073 KPJ09798.1 JTDY01001617 KOB73344.1 DS235787 EEB17110.1 APGK01059179 APGK01059180 KB741292 ENN70452.1 ENN70451.1 AJWK01000537 KB631594 ERL84520.1 GGMR01011124 MBY23743.1 ABLF02017295

Proteomes

UP000005204 UP000053268 UP000218220 UP000283053 UP000007151 UP000053240 + More
UP000037510 UP000009046 UP000019118 UP000092461 UP000030742 UP000007819

PRIDE

H9ISL7

Pfam

PF01805   Surp        + More
PF04818   CTD_bind
PF01585   G-patch
PF00153   Mito_carr

Interpro

IPR000467   G_patch_dom        + More
IPR006569   CID_dom
IPR035967   SWAP/Surp_sf
IPR006903   RNA_pol_II-bd
IPR008942   ENTH_VHS
IPR000061   Surp
IPR039037   CHERP
IPR018108   Mitochondrial_sb/sol_carrier
IPR023395   Mt_carrier_dom_sf

SUPFAM

SSF109905   SSF109905        + More
SSF48464   SSF48464
SSF103506   SSF103506

Gene 3D

1.10.10.790 1.25.40.90 1.50.40.10

ProteinModelPortal

H9ISL7 A0A2H1VZP0 A0A194Q7P0 A0A2A4J9I3 A0A3S2NNV7 A0A212F4N4 + More
A0A194QW83 A0A0L7LD58 E0VUQ4 N6TVX5 N6TQ60 A0A1B0C8F5 U4U3F7 A0A2S2P2P7 J9JSK0 A0A1W2WCX2 A0A1W3JPP8

PDB

6QX9 E-value=1.57526e-07, Score=136

KEGG

101743561 K12841 calcium homeostasis endoplasmic reticulum protein | (RefSeq) calcium homeostasis endoplasmic

PATHWAY

03040 Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723 GO:0006874 GO:0005623 GO:0006396 GO:0016021 GO:0003676 GO:0043565 GO:0007155 GO:0005515 GO:0008237 GO:0008152 GO:0016491 GO:0015930

PANTHER

PTHR12323

Length:

816

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0827

Exp number, first 60 AAs:

0.00098

Total prob of N-in:

0.00049

outside

1 - 816

Pi

241.407947

Theta

192.271968

Tajima's D

0.701423

CLR

0.001061

CSRT

0.573071346432678

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics