Gene

KWMTBOMO12964

Annotation

PREDICTED:_transcription_elongation_factor_1_homolog_[Plutella_xylostella]

Location

Bomo_Chr22(+):5788305-5788919      View in EpiBrowser

Full name

Transcription elongation factor 1 homolog      

Location in the cell

Nuclear   Reliability : 3.576

CDS

ATGGGACGTCGAAAATCAAAAAGGAAGCCACCACCAAAACGAAAGGCTACCGAGGCACTGGATCAGCAATTTAACTGTCCGTTTTGCAATCATGAAAAATCCTGCGAAGTAAAAATGGATCGCGCAAGGAATACTGCGCGAATACAGTGTCGAGTTTGTTTAGAAGATTTCCAAACAACAACAAATGTTTTGTCTGAGCCAATAGATGTATATAATGACTGGGTGGATGCTTGTGAAAGTGCGAATTAA

Protein

MGRRKSKRKPPPKRKATEALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDACESAN

Description

Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions.

Similarity

Belongs to the ELOF1 family.

Keywords

Metal-binding   Nucleus   Transcription   Transcription regulation   Zinc   Zinc-finger   Complete proteome   Reference proteome  

Feature

chain  Transcription elongation factor 1 homolog

Uniprot

A0A194R1S4   A0A194QDK6   A0A2H1VZP1   S4Q0B2   A0A212F4M9   Q9U501   + More
D6X363   A0A336LJA0   A0A232EFM3   K7J4X2   A0A1L8DHP5   U5EZF0   B4IV40   A0A224Y464   A0A0V0G970   A0A023F9D0   A0A069DVA1   A0A2A3EMJ4   A0A088AKB0   A0A2P8YQ77   A0A1W4VH03   B4MGG1   B4K4E8   B5DSA5   B4GE72   A0A0M4ECL6   B3MTK8   B4JHQ2   B3NJ89   B4NV21   B4INN1   L7EEF9   Q8MQI6   D3TLC9   A0A1A9XEY4   A0A1B0ARE6   A0A1B0ADA5   A0A1A9W8D4   A0A1B0EZI1   A0A1B0CEK0   A0A0P4W1Q8   R4FMJ2   Q0IFZ5   A0A023EE27   A0A0L7R030   A0A1Q3F5H5   B0WEX0   A0A1B0FCQ6   B4NA07   A0A0J7NAY3   A0A026X1S1   A0A154PGE5   A0A195CT75   A0A1A9VQ55   T1H732   A0A0K8TP13   R4UJU5   A0A0L0CCD2   E9IRQ5   A0A0N0BF85   A0A151X763   T1JJN4   F4WZ99   A0A195F7Q9   A0A158P1I6   N6U4Q3   A0A1W4WPC6   A0A151IZ15   A0A182PTZ8   A0A154PL55   A0A2J7PHF4   A0A067QXF0   A0A1S3DTG5   J9KPW7   A0A087UK15   A0A1I8M637   A0A182YEV5   A0A182LZ49   A0A182S6S0   A0A182V886   A0A182UK62   A0A182KXY1   Q7PH52   A0A182R8D6   A0A182WVF1   E2AFU8   A0A1Y9HA44   A0A182W2Z8   A0A084WR31   A0A3S3SPR9   A0A1L8EDQ6   A0A2M3ZDH0   A0A2M4AYZ2   A0A2M4C506   W5JGJ2   A0A182FX91   A0A0L7QL26   A0A2R7WD39   E0VKM1   A0A293LKJ5  

Pubmed

26354079    23622113    22118469    10620045    18362917    19820115    + More
28648823    20075255    17994087    17550304    25474469    26334808    29403074    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    12537569    20353571    27129103    17510324    24945155    26483478    24508170    30249741    26369729    26108605    21282665    21719571    21347285    23537049    24845553    25315136    25244985    20966253    12364791    14747013    17210077    20798317    24438588    20920257    23761445    20566863   

EMBL

KQ461073    KPJ09801.1    KQ459324    KPJ01541.1    ODYU01005445    SOQ46311.1    + More
GAIX01000093    JAA92467.1    AGBW02010334    OWR48695.1    AF117587    KQ971372    EFA10805.1    UFQS01005063    UFQT01001174    UFQT01005063    SSX16687.1    SSX29298.1    NNAY01004967    OXU17160.1    GFDF01008095    JAV05989.1    GANO01000916    JAB58955.1    CH892605    EDW99604.1    GFTR01000943    JAW15483.1    GECL01001667    JAP04457.1    GBBI01000606    JAC18106.1    GBGD01003655    JAC85234.1    KZ288217    PBC32379.1    PYGN01000437    PSN46408.1    CH940675    EDW58211.1    CH933806    EDW13900.1    CH475481    EDY71453.1    CH479182    EDW33907.1    CP012526    ALC45416.1    CH902623    EDV30139.1    CH916369    EDV93891.1    CH954178    EDV52872.1    CH985487    EDX15896.1    CH676488    EDW51374.1    KX531586    AE014296    ANY27396.1    ELP57411.1    AY129458    EZ422231    ADD18507.1    JXJN01002381    AJVK01007413    AJWK01008941    GDKW01001012    JAI55583.1    ACPB03021649    GAHY01000973    JAA76537.1    CH477281    EAT44929.1    JXUM01015655    JXUM01126288    GAPW01006719    KQ567050    KQ560436    JAC06879.1    KXJ69649.1    KXJ82430.1    KQ414672    KOC64210.1    GFDL01012233    JAV22812.1    DS231912    EDS25828.1    CCAG010006641    CH964232    EDW81762.1    LBMM01007398    KMQ89765.1    KK107024    QOIP01000004    EZA62217.1    RLU23910.1    KQ434889    KZC10260.1    KQ977305    KYN03722.1    GDAI01001712    JAI15891.1    KC571850    AGM32349.1    JRES01000577    KNC30098.1    GL765283    EFZ16624.1    KQ435808    KOX72992.1    KQ982450    KYQ56212.1    JH431929    GL888470    EGI60488.1    KQ981756    KYN36099.1    ADTU01006685    APGK01042895    KB741009    KB632250    ENN75601.1    ERL90595.1    KQ980735    KYN13765.1    KQ434954    KZC12611.1    NEVH01025138    PNF15760.1    KK852858    KDR14863.1    ABLF02039777    KK120184    KFM77704.1    AXCM01000016    AAAB01008888    EAA44682.1    GL439158    EFN67697.1    AXCN02001184    ATLV01025911    KE525402    KFB52675.1    NCKU01000107    RWS17217.1    GFDG01001972    JAV16827.1    GGFM01005804    MBW26555.1    GGFK01012683    MBW46004.1    GGFJ01011272    MBW60413.1    ADMH02001252    ETN63482.1    KQ414934    KOC59327.1    KK854643    PTY17576.1    DS235248    EEB13927.1    GFWV01003631    MAA28361.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000007266    UP000215335    UP000002358    + More
UP000002282    UP000242457    UP000005203    UP000245037    UP000192221    UP000008792    UP000009192    UP000001819    UP000008744    UP000092553    UP000007801    UP000001070    UP000008711    UP000000304    UP000001292    UP000000803    UP000092443    UP000092460    UP000092445    UP000091820    UP000092462    UP000092461    UP000015103    UP000008820    UP000069940    UP000249989    UP000053825    UP000002320    UP000092444    UP000007798    UP000036403    UP000053097    UP000279307    UP000076502    UP000078542    UP000078200    UP000015102    UP000037069    UP000053105    UP000075809    UP000007755    UP000078541    UP000005205    UP000019118    UP000030742    UP000192223    UP000078492    UP000075885    UP000235965    UP000027135    UP000079169    UP000007819    UP000054359    UP000095301    UP000076408    UP000075883    UP000075901    UP000075903    UP000075902    UP000075882    UP000007062    UP000075900    UP000076407    UP000000311    UP000075886    UP000075920    UP000030765    UP000285301    UP000000673    UP000069272    UP000009046   

PRIDE

Q8MQI6   

Pfam

PF05129   Elf1

Interpro

IPR038567   T_Elf1_sf        + More
IPR007808   Elf1       

Gene 3D

2.20.25.190    

ProteinModelPortal

A0A194R1S4   A0A194QDK6   A0A2H1VZP1   S4Q0B2   A0A212F4M9   Q9U501   + More
D6X363   A0A336LJA0   A0A232EFM3   K7J4X2   A0A1L8DHP5   U5EZF0   B4IV40   A0A224Y464   A0A0V0G970   A0A023F9D0   A0A069DVA1   A0A2A3EMJ4   A0A088AKB0   A0A2P8YQ77   A0A1W4VH03   B4MGG1   B4K4E8   B5DSA5   B4GE72   A0A0M4ECL6   B3MTK8   B4JHQ2   B3NJ89   B4NV21   B4INN1   L7EEF9   Q8MQI6   D3TLC9   A0A1A9XEY4   A0A1B0ARE6   A0A1B0ADA5   A0A1A9W8D4   A0A1B0EZI1   A0A1B0CEK0   A0A0P4W1Q8   R4FMJ2   Q0IFZ5   A0A023EE27   A0A0L7R030   A0A1Q3F5H5   B0WEX0   A0A1B0FCQ6   B4NA07   A0A0J7NAY3   A0A026X1S1   A0A154PGE5   A0A195CT75   A0A1A9VQ55   T1H732   A0A0K8TP13   R4UJU5   A0A0L0CCD2   E9IRQ5   A0A0N0BF85   A0A151X763   T1JJN4   F4WZ99   A0A195F7Q9   A0A158P1I6   N6U4Q3   A0A1W4WPC6   A0A151IZ15   A0A182PTZ8   A0A154PL55   A0A2J7PHF4   A0A067QXF0   A0A1S3DTG5   J9KPW7   A0A087UK15   A0A1I8M637   A0A182YEV5   A0A182LZ49   A0A182S6S0   A0A182V886   A0A182UK62   A0A182KXY1   Q7PH52   A0A182R8D6   A0A182WVF1   E2AFU8   A0A1Y9HA44   A0A182W2Z8   A0A084WR31   A0A3S3SPR9   A0A1L8EDQ6   A0A2M3ZDH0   A0A2M4AYZ2   A0A2M4C506   W5JGJ2   A0A182FX91   A0A0L7QL26   A0A2R7WD39   E0VKM1   A0A293LKJ5  

PDB

1WII     E-value=1.03773e-21,     Score=248

KEGG

101744098    no KO assigned | (RefSeq) transcription elongation factor 1 homolog

GO

GO:0046872   GO:0005634   GO:0003746   GO:0000993   GO:0006368   GO:0008023   GO:0048096  

PANTHER

PTHR20934  

Subcellular location

Nucleus  

Length:

82

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.78812

inside

1  -  82

 

 

Pi

211.318223

Theta

173.48244

Tajima's D

0.583337

CLR

0

CSRT

0.539873006349682

Interpretation

Uncertain