Silkworm Genome Informatics Database

Gene

KWMTBOMO12961

Pre Gene Modal

BGIBMGA000449

Annotation

PREDICTED:_GATA-binding_factor_C-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr22(-):5613131-5723054 View in EpiBrowser

Transcription factor

zf-GATA

Location in the cell

Nuclear Reliability : 4.638

CDS

ATGGTGTGTGAGATCGGTGCCGCGGTCATGGACATGAGCGGAGAGGGCGGCGGCGCGGGGGCGAGCGCGCTGCAGCAGCGGTGGTACGAGAGCCGCCTTAACGGCAGCCCTGCCGCCGGCGACGTCAACGCGGAGACCAATGGAGACGGCTTCTTCCATTCTCCGCTCGAAGGGGGCCACCATAGCCGCGCCCGCTACTACCATCAGCAGATGCACGCCCCCTACTCGGCCGCTGTCGGTTCGCATGGTCGAACGTTAAGCGGTAGCAGTGGGCAGGTGTGTCGGCCTCACTTCCATACGCCTCTGCATCCTTGGCTCGAGTCTAAGGCGCTGGGGAGCGGGGCGTGGGGAGGAGGCTTCCAACAAGATGGTTCCTCGGGCGACAAACCGCTGTCACCAGCACAACACCCTCATCCCCATCCTTTGTTTTCATTTCCTCCGACTCCTCCGAAAGACTCGACGCCGGACTCTGTGGCTGCGGCGGCTCTCGGTCAACAGGACTACCAGGCCGCGGTAGCGCATGCCACAGCGATGAGCGTCGCCTTCATGCAGCAACAACAAGAGCTGCCCCTCTGCGGAGACGTCAAACCAATGATGGGCGCGCCGCCTTCCAAACAGCGCGAAGGTGCGCAACCGGACTCTTGCGCCCAGGACACGAGTCAACCCTCCGGGGAATACAACGCTCAGTACAATGCCGCCGGCGGCGACTACTACAACTATCAGGGGAAAGGTTATAGCGGAGCGCAGCAGCAGAACAAGCCGCGACCGAACAAGACGCGAACTAGCGCCGAGGGTCGAGAGTGCGTCAACTGTGGGGCGACGAGCACTCCGCTGTGGCGACGAGACGGCACCGGACACTACCTCTGCAACGCCTGCGGTCTCTACTACAAGATGAACGGACAAAACCGACCATTGATCAAGCCTAAACGAAGATTGTCGTTACAAAGTGCGGCCCGACGGGCGGGAACCTCGTGTGCGAACTGTAAGACGACCACAACGACATTATGGAGGAGAAACCAGAACGGAGAACCTGTATGCAACGCTTGCGGACTCTACTACAAGCTACACAACGTAAACCGACCTTTGACGATGAAGAAGGAAGGTATCCAGACAAGAAATAGGAAGTTAAGCAGTAAAAGTAAGAAGAAGAAGGGAGGAATGGGAATGGGCGGTGGGGGAGCTTGTGCTTTAGCGCTCGGCGGAGTCATGGGAGACATGATAAAGCCTCTCGGAGACGCTACCAAAGGATTCGGAGGCTCAGCCTTCCCGTCAGCTATGGATTTCGGTCAGCACCAAGTGGGCTTAGTCCACCCGGCGGCCGCGCACATGTCCCACTGGTACGGAGCGCCCCATCAGGGTTTCGCCCCACCACCGACCTCCCACAACCCTTACCATCACCATCACCTTGCGCAGCTCAATTCTATGTACCGTACCAGAAACATTCCTTAA

Protein

MVCEIGAAVMDMSGEGGGAGASALQQRWYESRLNGSPAAGDVNAETNGDGFFHSPLEGGHHSRARYYHQQMHAPYSAAVGSHGRTLSGSSGQVCRPHFHTPLHPWLESKALGSGAWGGGFQQDGSSGDKPLSPAQHPHPHPLFSFPPTPPKDSTPDSVAAAALGQQDYQAAVAHATAMSVAFMQQQQELPLCGDVKPMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGYSGAQQQNKPRPNKTRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLSLQSAARRAGTSCANCKTTTTTLWRRNQNGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGGMGMGGGGACALALGGVMGDMIKPLGDATKGFGGSAFPSAMDFGQHQVGLVHPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHHLAQLNSMYRTRNIP

Uniprot

A0A3S2LRT6 D7EHV3 A0A1W4XIW0

Pubmed

18362917 19820115

EMBL

RSAL01000021 RVE52483.1 KQ973114 EFA12165.2

Proteomes

UP000283053 UP000007266 UP000192223

Pfam

PF00320 GATA

Interpro

IPR000679   Znf_GATA        + More
IPR013088   Znf_NHR/GATA
IPR039355   Transcription_factor_GATA
IPR016374   TF_GATA-2/3

Gene 3D

3.30.50.10

CDD

cd00202 ZnF_GATA

ProteinModelPortal

A0A3S2LRT6 D7EHV3 A0A1W4XIW0

PDB

4HCA E-value=3.68211e-45, Score=458

KEGG

101744528 K17894 GATA-binding protein 2 | (RefSeq) GATA-binding factor C-like

GO

GO:0046872 GO:0005634 GO:0000978 GO:0030097 GO:0000981 GO:0008270 GO:0003700 GO:0000976 GO:0045582 GO:0006355 GO:0043565 GO:0007155 GO:0005515 GO:0008237 GO:0008152 GO:0016491 GO:0015930

PANTHER

PTHR10071

Subcellular location

Nucleus

Length:

482

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.47329

Exp number, first 60 AAs:

0.00217

Total prob of N-in:

0.03371

outside

1 - 482

Pi

230.046345

Theta

182.491956

Tajima's D

0.846928

CLR

0.400769

CSRT

0.616719164041798

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics