SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12956
Pre Gene Modal
BGIBMGA000454
Annotation
PREDICTED:_rho_GTPase-activating_protein_100F_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr22(-):5351556-5399320      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.697
 

Sequence

CDS
ATGCAGTGGCGAAAACTTACCAGGTTGAAGTCTTCGCCGGGCGGACAGTCGCGCGCTCGGAGGATGCTCTGCTGCGGCCGCAGGAAGGAGAACGGCCGCGCGGCGCCGGACTTGACGGCGTCGCCGGGACGCGCGCCGCCCGGTCCGCCGCAACCGGCCCGTGCCAACCATGCGCCGCCCTGTGTGCTGCAGCCAGACTTCAGAAAGGTATCCGGAGTTAGCAATGAAATATTCAGGCAGATTGAAATGGTTGAAAACGATCACGATTCTACCACCGCCGCGGCGCTCGAGGCGGTGGAGCGCCGTGGCGAGATGATCGTGAGAATTCTCGAATTGAGACAAGTTGGTCGAAACAATATTGAAGCCGCCAAGAAATTCTTCGCATTACAGGACACGCGTCATGTAGTTCAACTTGTGGAGATTGTGAAACGTCCAGGTCAAACCCTTGGACTTTACATCAGAGAAGGAGACGGTGGAACCAGAACTGATGGGGTGTTCATTTCACGAATAGCCTTGGAGTCAGCAGTGTACAACAGTGGTTGTTTGAAGGTCGGAGACGAGATACTTGCGGTGAACCTAGTTGATGTGAGACGAATGTCATTGGATGATGTCGTTATTATTATGTCGATACCTAGAAGATTGTTGCTGTGCACAAGACAGAGAAAAGGGAAATCTGGCCCGGGTTCGCCGTCACTACCACGGTCGGAGCACAAGCCGCCGCCCGTCGTTGTTCTCAAGCGGGACTGTCGTGACGATGAAGACAGGGAAAGGGAAAGAGATCGAGATCGCGTTGACGGACTTTATTCGCAACATGGCACACTCCGGTCTACAGGCGGGCATGGTAATGCAGTGCGTCCAGTTGGTGATGGTAGGGAAGAGAGGAGTCGCCTCCAGCTCGGTGCACTGTCCCCAGATTCTGCAGCACTTGACCTGTATTATAATCCTAGACCACCGTCTGATCATTCTACTTGGAGTTACCGCCCGCCACCACCAGTAATAACAGAACAACCTAAATCATCAGCCACACATTTTGTACCATACGAACGTTCGTATCCTAATACGCTTGATAGTCTCGCAGAAAAAGTTCACTCGTACTATCCACCGGAAAGTGGAAGTACGCGCTTTGGTGGCAGAGTTCCGAGGTCTGGGTCAGAGCAGCAGTTGCCGCGTGCGGAAACGCACTCAGATTTTGGACGGCATTCGTTGCTAAGATCAAGCTTAAAGGCGTCGACAGCCACTGGTGGTGCATCAAGCCTCTCAAGATATAACCATCGTTATGGTGGCGTTGGCATGCCAGGATCTGGAATAACAAGCAGTGGTCTGGCAAACACTGGATTAACGTCTACTGGATTAGGAGGTCCAGGATTACCATCTGGCTTATCTAGTACGGGCCTCAGTGCTCTTACTGGATCTAGTCTCGTGGGACCTGGACTAACTAGCTCGGGATTAGGGACCGGCTTGTCTGGTACTGGCTTAGGATCTACATTGGGTGGAGGTTACGGGACGACTGGATTAGGACTTCCATCATATAGTAGTAAATTTGGTACAGCGAGGAGAAATCGAAGCTTAGATTATTCATCCGATACAGAGGCTACGGCACCAACTCGACCTCCATATTATTCTGGTTTAAGTGGATACAGAAGTAGCACATTAGGAAGGGACATTACTTCAAAGTTTAATTCACTGCCCAGGGATGTGCGAAACACCGGACAAAGGTTGGGGTTGACAAGACGTACCGGAAGTGTCCTTCAAGATGAACCAGAACCCCTATCTTCACGACTCGATCTTCGCTCTTCAAGAGGTCGTCTACCTTCTTCGCCGTCAGTGTTCACGTCGGACGAATACAGAGCTTGGCTTTCTCGAGCCCCTTCTACTAGTGCACTTTACGAAACTCTGCGTCCACGTCTACCCACTCACTACTCAGCAGAAAATATACATGATGCGCTCAAAAATATGGAAAACGCTAGTCGTTTCGGATCATCATTAGGCTTGGCAGGGCGTCGCATTGAGCGTCCCAGGCACTTGCCAGCGCGGTCGGTATCCTCGCAGCAGCTGGGAGCAACGCAACAGTTAGGCGGTGGGCCGGGAGGTTCACCTTCCACTCGACGAGTCCGTCAGCTACTGGAACTAGGCTCGCGGTTCACGTGTCCGAATCCCAGTCCGGTACCGACACCTGGTTCAAGGCACCAGAGACCGCTCGATATCAATCCTAGTGACTTCCTTAAATACAAAGTGGATAAGATGACTGGTGGTGGTTTGTCGGCATCAATGACTGGCCTGTCGCGACTGTCCGGTGGTGTGTCAGGCATGCTGTGGATACACCTCTTGTCTGGGAGGGGATTGCGCCCTGCGGGAGCATCAGGCTCATCCCCGGGATCACCGCCTTCTGGGCCTATCATGTCGGTTCATCCCCCAGTTGCAACACGTGACTTGTACTGCGTTCTCGAATGTGATCGAGTACACAAAGCTCGTACAGTGATTCGTAACAGCGAGCTGGACTTCGATTGGGATGAGGCCTTCGACTTAGAGTTAGTTGATAACAGACAGTTGGATGTACTGGTGTACTCATGGGATCCCCAACACAGGCACAAGTTGTGTTATAGAGGTGTCATAACGCTACCTGACTTAGTTGCTCGATCTGCAATGCACCAACTTGCAATCAAGTTGGAGCCACGCGGTACATTGTACGTGAGGATACGGCACACGGAGCCTCATGAGCTGTTCCGACGGCGCCCGACTCAAGGTCGCGTGTCTCCTCCTCCGCTGTTCGGTTCGGAGCTGGAGGCGGTAGTGGCGCGGGAGATCCGCCCTCCTAACGCGCCGCCCGTACCTCTCATCGTCCGACGATGCGTTGAGGAAATCGAGAGACGAGGACTTGATATCATAGGTCTTTATCGTTTGTGTGGAGCGGCAAGTAAGAAGCGTGTGCTTCGGGAAGGGTTTGAACGGAACGCCCGTACCGTGGAACTCACGCCTGAGGCTGTTCCGGATATAAATGTCATAACGGGCGTCCTGAAAGATTACCTTCGCGAATTGCCTCAACCCCTGTTCAGTCGATGCCTTTTCCAAATGACATTAGACGCTTTAGGAGTATGTCTCCCCGACGACAGGGAAGGAAACGCTCGTCTAATGGCCTCCATAGTGGAATGCTTGCCGAGGGCCGCGAGAGCCACTTTGGTATTCCTATTAGACCACCTGGCCCTAGTGGTAGCTGCACAAGACCGCAACAAGATGTCGCCGCAGCATCTCGCCGTAGCTCTGGCTCCACCTTTAATGCTACATTCGTCGCCTCCTGGCGAATTGGACTATCAAAGACCCATCCATGTACTCCAATGTCTATTACAGATTTGGCCTCCACCTAAGCGTTCAGTTCGGCGCGGCGAGCCAGTAATCGGGCCGCGTGGAAACAGAGTCAGTGCGTCGCCAGCGGGCTCACACACGCTCCACCCAGGCCGAGCTCAGTCCTCAGTCAGTCCATTTCGGCCTCAAGCGGCAGCATCAGCAGCATCTCCGCCGCCAGCTCTATCGGGTCGGCCCGTGCCCGACCGCTCGCCGCCCGCACATGTTCTCTCATCAGTCAGGGGCGGCCAATATCGTCCGCAGTCGCCACTCCGAGGTCCGCTGCCCGCACCGCCGCGGGCGCGCTCTGCGACAGCTTCATCGCCCGGGTCCAGCACTAGCTCGGGCAGTCACAGTCCCGCCGACACGATCAAGCACGGTGGCTCGGTGTCGTCTATCTTGCGTCAGCCGGAACGTCAGTCGCCGTCGCGTGCGTCACCGCGCAGCTCTCCGCGAGCGTCGCCGCGTGCGTCACCCAGAGAGTCTCCGCGCACCGCCTCACCGCGTCTCACGGCCTCAGCTCCGTCGGCCCCCGCCATACCCGGCACGTCAGCGGGGCTCGCCGTCACACTCAATTCAGCGCTGAGCCCGCGGTACGATTCTTCAACGAATCCGTTCCTGCAGCAATACGACGCGGAAGCGGAGGCGGAGGCGTGGCGTTCGGCGGATATCTTCTCGCCGCCGTCGACGCGCGCATAA
Protein
MQWRKLTRLKSSPGGQSRARRMLCCGRRKENGRAAPDLTASPGRAPPGPPQPARANHAPPCVLQPDFRKVSGVSNEIFRQIEMVENDHDSTTAAALEAVERRGEMIVRILELRQVGRNNIEAAKKFFALQDTRHVVQLVEIVKRPGQTLGLYIREGDGGTRTDGVFISRIALESAVYNSGCLKVGDEILAVNLVDVRRMSLDDVVIIMSIPRRLLLCTRQRKGKSGPGSPSLPRSEHKPPPVVVLKRDCRDDEDRERERDRDRVDGLYSQHGTLRSTGGHGNAVRPVGDGREERSRLQLGALSPDSAALDLYYNPRPPSDHSTWSYRPPPPVITEQPKSSATHFVPYERSYPNTLDSLAEKVHSYYPPESGSTRFGGRVPRSGSEQQLPRAETHSDFGRHSLLRSSLKASTATGGASSLSRYNHRYGGVGMPGSGITSSGLANTGLTSTGLGGPGLPSGLSSTGLSALTGSSLVGPGLTSSGLGTGLSGTGLGSTLGGGYGTTGLGLPSYSSKFGTARRNRSLDYSSDTEATAPTRPPYYSGLSGYRSSTLGRDITSKFNSLPRDVRNTGQRLGLTRRTGSVLQDEPEPLSSRLDLRSSRGRLPSSPSVFTSDEYRAWLSRAPSTSALYETLRPRLPTHYSAENIHDALKNMENASRFGSSLGLAGRRIERPRHLPARSVSSQQLGATQQLGGGPGGSPSTRRVRQLLELGSRFTCPNPSPVPTPGSRHQRPLDINPSDFLKYKVDKMTGGGLSASMTGLSRLSGGVSGMLWIHLLSGRGLRPAGASGSSPGSPPSGPIMSVHPPVATRDLYCVLECDRVHKARTVIRNSELDFDWDEAFDLELVDNRQLDVLVYSWDPQHRHKLCYRGVITLPDLVARSAMHQLAIKLEPRGTLYVRIRHTEPHELFRRRPTQGRVSPPPLFGSELEAVVAREIRPPNAPPVPLIVRRCVEEIERRGLDIIGLYRLCGAASKKRVLREGFERNARTVELTPEAVPDINVITGVLKDYLRELPQPLFSRCLFQMTLDALGVCLPDDREGNARLMASIVECLPRAARATLVFLLDHLALVVAAQDRNKMSPQHLAVALAPPLMLHSSPPGELDYQRPIHVLQCLLQIWPPPKRSVRRGEPVIGPRGNRVSASPAGSHTLHPGRAQSSVSPFRPQAAASAASPPPALSGRPVPDRSPPAHVLSSVRGGQYRPQSPLRGPLPAPPRARSATASSPGSSTSSGSHSPADTIKHGGSVSSILRQPERQSPSRASPRSSPRASPRASPRESPRTASPRLTASAPSAPAIPGTSAGLAVTLNSALSPRYDSSTNPFLQQYDAEAEAEAWRSADIFSPPSTRA

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
3BYI     E-value=2.31601e-15,     Score=206

Ontologies

KEGG
101745051    K20655 Rho GTPase-activating protein SYDE | (RefSeq) rho GTPase-activating protein 100F
GO
GO:0005515   GO:0007165   GO:0020037   GO:0050660   GO:0007155   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

Topology

Length:
1345
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04305
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00025
outside
1  -  1345
 
 

Population Genetic Test Statistics

Pi
204.725878
Theta
175.318379
Tajima's D
0.373565
CLR
0.645363
CSRT
0.47657617119144
Interpretation
Uncertain
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