SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12953
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 2.529
 

Sequence

CDS
ATGTTGCCCTCACGTTCAATTTTCGCAGATTTCATTCGATTTATTAATTTTATTACACGTAAATGTATCATCTGGAGTTCCTTGTGGAAGGTATTGAATGTTTTTGGTGTACCCAATCATCTGATAGTGCTGGTACAGAGCCTGTATATCTACAGTCAGGGAGTTGTCAGAATCGATGAAGCTGTGTCCCAACCGTTCTGTTTTGGAAAAGGTGTCCGGCAAGGTTGCATACTGTCACCTATACTTTTTAATGCATATGGAGAGTACATCATGCGGCAGACTTGTGAAGATTGGTCGGGAGGTGTGCGCATTGGTGGAGCTCATATTACAAATCTCCGATATGCCGATGACACGACCCTGCTAGCTGCAGACGAATCTGAAATGTCTCTTTTCTTCAGCAAAATGGAACGTATCAGCAACAGCCTAGGCCTCTCCATAAATAGATCAAAAACGAAATTAATGGTGGTGGATCGTGCAAATGTTCTAAGATTGAGTGGGGCGCTTGGATTAGAGGTTGTAGACGAATTCGTGTATCTCGGGTCCTGCATCAGCAACAAAGGCTCATGTGAAACTGACGTGCGCCGACGTATCGGAATGGCTAAAAGTGCGATGTCTCAGCTACAGAAGATCTGGAGGAATAGAGGGATAAGCCTGAAAACTAAAACCAGACTGGTGCGGACTCTTGTTTTCTCTATCTTCTTGTATGGAGCTGAGACATGGACGTTGAAAGCAGCAGACCGAATGCGCATCGATGCTTTCGAAATGTGGTGTTGGAGACGCATGCTAAGAATTCCGTGGACAGCCTTCCGGACTAACGTGTCGATATTGAAGCAACTGGGCATCAAAATCAGACTGTCTACTGTATGTCTGAAGCAGATCCTCGAATATTTTGGTCACATTGCGAGGAAAGACGGCGATAACCTGGAAAAACTTATGATCACAGGGAAAGTTGAAAGCAACAGATCTAGAGGCCGCAGCCCGACTCGTTGGTCCGATCAGATCCGCATCGCTTTGGACAGTACAGTGTACAGCGCGCTGCATGACGCCGTGGGCAGGGGAAAGTGGAAAAACATCTTAAGATTGAAGCTCATGGGTGATGGTGGTCACGACCCTCAGACATGA
Protein
MLPSRSIFADFIRFINFITRKCIIWSSLWKVLNVFGVPNHLIVLVQSLYIYSQGVVRIDEAVSQPFCFGKGVRQGCILSPILFNAYGEYIMRQTCEDWSGGVRIGGAHITNLRYADDTTLLAADESEMSLFFSKMERISNSLGLSINRSKTKLMVVDRANVLRLSGALGLEVVDEFVYLGSCISNKGSCETDVRRRIGMAKSAMSQLQKIWRNRGISLKTKTRLVRTLVFSIFLYGAETWTLKAADRMRIDAFEMWCWRRMLRIPWTAFRTNVSILKQLGIKIRLSTVCLKQILEYFGHIARKDGDNLEKLMITGKVESNRSRGRSPTRWSDQIRIALDSTVYSALHDAVGRGKWKNILRLKLMGDGGHDPQT

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
373
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.40007
Exp number, first 60 AAs:
2.65771
Total prob of N-in:
0.12204
outside
1  -  373
 
 

Population Genetic Test Statistics

Pi
218.199861
Theta
142.489142
Tajima's D
1.569155
CLR
0.098007
CSRT
0.795360231988401
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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