Gene

KWMTBOMO12934

Pre Gene Modal

BGIBMGA000464

Annotation

PREDICTED:_ribosome_biogenesis_protein_TSR3_homolog_[Papilio_xuthus]

Location

Bomo_Chr22(-):4707291-4708179      View in EpiBrowser

Full name

Probable ribosome biogenesis protein 101746309       + More
Probable ribosome biogenesis protein OBRU01_23797      
Probable ribosome biogenesis protein B5V51_6170      
Probable ribosome biogenesis protein evm_002898      
Probable ribosome biogenesis protein RR46_08604      
Probable ribosome biogenesis protein RR48_03399      
Probable ribosome biogenesis protein      
Probable ribosome biogenesis protein SFRICE_041652      
Probable ribosome biogenesis protein KGM_210034      
Probable ribosome biogenesis protein CLUMA_CG014240      
Probable ribosome biogenesis protein RP20_CCG002223      
Probable ribosome biogenesis protein CSON003238      
Probable ribosome biogenesis protein AAEL010333      
Probable ribosome biogenesis protein AND_007615      
Probable ribosome biogenesis protein DMN91_010072      
Probable ribosome biogenesis protein DMN91_010339      
Probable ribosome biogenesis protein CpipJ_CPIJ007052      
Probable ribosome biogenesis protein TSAR_015889      
Probable ribosome biogenesis protein EAG_14988      
Probable ribosome biogenesis protein LOC108097853      
Probable ribosome biogenesis protein Dbus_chr3Rg414      
Probable ribosome biogenesis protein G5I_02299      
Probable ribosome biogenesis protein DGUA_6G016415      
Probable ribosome biogenesis protein EAI_10025      
Probable ribosome biogenesis protein Dmoj_GI22926      
Probable ribosome biogenesis protein APICC_05606      
Probable ribosome biogenesis protein WN55_05247      
Probable ribosome biogenesis protein 101900660      
Probable ribosome biogenesis protein Dwil_GK13794      
Probable ribosome biogenesis protein ALC56_11817      
Probable ribosome biogenesis protein Dper_GL12540      
Probable ribosome biogenesis protein Dpse_GA18120      
Probable ribosome biogenesis protein ALC57_18367      
Probable ribosome biogenesis protein Dvir_GJ23209      
Probable ribosome biogenesis protein Dana_GF11442      
Probable ribosome biogenesis protein Dyak_GE24288      
Probable ribosome biogenesis protein ALC62_10446      
Probable ribosome biogenesis protein OFAS_OFAS016647      
Probable ribosome biogenesis protein Dsec_GM24214      
Probable ribosome biogenesis protein 106095611      
Probable ribosome biogenesis protein g.12270      
Probable ribosome biogenesis protein CG4338      
Probable ribosome biogenesis protein B7P43_G11312      
Probable ribosome biogenesis protein Dere_GG16907      
Probable ribosome biogenesis protein g.27403      
Probable ribosome biogenesis protein WH47_12288      
Probable ribosome biogenesis protein TSR3      
Probable ribosome biogenesis protein Dgri_GH18855      
Probable ribosome biogenesis protein Dsim_GD19004      
Probable ribosome biogenesis protein Phum_PHUM390100      
Probable ribosome biogenesis protein g.8821      
Probable ribosome biogenesis protein L798_05203      
Probable ribosome biogenesis protein LOC103512402      
Probable ribosome biogenesis protein ZHAS_00006421      
Probable ribosome biogenesis protein TcasGA2_TC003119      
Probable ribosome biogenesis protein g.27404      
Probable ribosome biogenesis protein RF55_3488      
Probable ribosome biogenesis protein BIW11_12702      
Probable ribosome biogenesis protein D910_02810      

Location in the cell

Nuclear   Reliability : 2.572

CDS

ATGGCACCAGGGAAAAAAGGCAGCGTGCACGGCAAGCGTTCAAAACATCACGCTCCACGAGACTACGCGGAGACATTAAATGATTTAACTATCAAATCTTCATCGGACGACACTGATGCAAGCAGTTCTGATGATGAAGGAATCAAAGCTACATTTTCAGTAAGCATGTGGGATCTGAATCATTGCGATCCCAAAAAATGTTCGGGCCGTAAATTATTAAGGCATAACCTCATAAAAAACTTGAAACTTGGGCACAGATTTCAAGGTTTAGTGTTGTCACCCGTAGGTACTCAGTGTGTGAGTCCCAACGATAAGAACATTATAGAAACATTTGGGTTAGCGGTCATTGACTGTTCATGGGCAAAAATTGATGAGACGCCGTTCAGCAGAATGAAGTCACCACATCCGAGGCTATTACCGTTCCTCGTTGCGGCGAACCCTATAAATTACGGAAAGCCATACCAATTGAGTTGTGTAGAAGCACTGGCAGCTGCCATGTTCATAACTGGACATAAAAGTGAAGCAAAATTCTATTTATCAAAGTTCTCATGGGGTCATTCGTTTTTAGAGTTGAATTCTGATGCATTAGATCTATATGCAGTGTGCACTGACAGTAAAAGTGTTTTAGAGGCGCAAGCGACATTTTTGGAATCTGTGAAAAATGAACAAGATGATAGGCCGATGTGGCCGCCAAGTGAATCAGACAGTGCGTCAGATAGCTGA

Protein

MAPGKKGSVHGKRSKHHAPRDYAETLNDLTIKSSSDDTDASSSDDEGIKATFSVSMWDLNHCDPKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKNIIETFGLAVIDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKFYLSKFSWGHSFLELNSDALDLYAVCTDSKSVLEAQATFLESVKNEQDDRPMWPPSESDSASDS

Description

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Similarity

Belongs to the TSR3 family.

Uniprot

H9IT84   A0A0L7K2Z8   A0A2A4J896   A0A3S2NJE2   A0A194Q7Q5   I4DRA6   + More
A0A0N1I7L4   I4DKN0   A0A2H1WE83   A0A212F190   S4PM14   A0A1L8DRI7   A0A1J1IMQ8   A0A182G3N2   A0A182Q9H2   A0A336M4S3   Q16T92   A0A182Y9Y9   A0A336LXE9   A0A1Q3F095   W5JD96   A0A182K0M3   A0A182IPW0   A0A3L8DBV6   A0A1S4GY80   A0A182IC25   A0A026WXS9   B0WIP7   A0A182L0F3   A0A182U365   A0A2M4BVP0   A0A1I8JUL0   A0A2M4BVK3   A0A2M4BVM1   A0A232FIK8   A0A2M4ANG1   A0A182UN42   A0A182XFU0   A0A2M3ZA24   A0A2M3Z933   A0A2M3Z8V5   A0A182PAP8   A0A182WHD0   E2ARN9   A0A1B0CKZ7   A0A182F5K4   A0A1W4VVE8   A0A1A9YMT0   A0A1B0A4M6   A0A0M4EMG2   F4W9Y2   A0A1B0BWQ8   A0A3B0JP72   E2BJ87   B4K5U9   E9I9K5   D3TMU8   A0A1A9V7Q8   A0A2A3ESG3   A0A154PQR9   A0A1I8MIZ5   A0A088AP90   B4NIS3   A0A151JTJ6   B4GLB6   Q294B3   A0A151IS67   B4LZY8   B3MX84   B4PS61   A0A151IDU2   A0A2R7X3U8   A0A147BRQ9   B4HDY9   A0A1I8PM79   A0A1B6IX41   Q9VFA0   A0A131Y5C1   A0A2J7RA98   B3P0T6   A0A1B6L647   A0A0L7RAU0   A0A2P2I712   A0A1B6H1D6   W8BS53   B4JGD0   B4QZ22   E0VQZ9   A0A1B6C090   A0A067RBS1   A0A1S3D6D3   A0A034WTA6   A0A084VMA1   D6WFA0   A0A1B6L5K7   A0A0K2V6N2   A0A0J7L0X7   A0A1V9X5Q8   U4U622  

Pubmed

19121390    26227816    26354079    22651552    22118469    23622113    + More
26483478    17510324    25244985    20920257    23761445    30249741    12364791    24508170    20966253    28648823    20798317    21719571    17994087    21282665    20353571    25315136    15632085    17550304    29652888    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    20566863    24845553    25348373    24438588    18362917    19820115    28327890    23537049   

EMBL

BABH01013496    JTDY01014208    JTDY01008154    KOB52044.1    KOB64710.1    NWSH01002732    + More
PCG67613.1    RSAL01000021    RVE52504.1    KQ459324    KPJ01567.1    AK405041    BAM20446.1    KQ460968    KPJ10223.1    AK401848    BAM18470.1    ODYU01008092    SOQ51395.1    AGBW02010923    OWR47508.1    GAIX01003775    JAA88785.1    GFDF01005139    JAV08945.1    CVRI01000055    CRL01527.1    JXUM01141868    KQ569321    KXJ68668.1    AXCN02000840    UFQT01000157    SSX21018.1    CH477657    EAT37698.1    SSX21017.1    GFDL01014074    JAV20971.1    ADMH02001866    ETN60789.1    QOIP01000010    RLU17834.1    AAAB01008964    APCN01000774    KK107077    EZA60551.1    RLU18096.1    DS231951    EDS28624.1    GGFJ01007996    MBW57137.1    GGFJ01007912    MBW57053.1    GGFJ01007913    MBW57054.1    NNAY01000169    OXU30360.1    GGFK01008992    MBW42313.1    GGFM01004601    MBW25352.1    GGFM01004261    MBW25012.1    GGFM01004169    MBW24920.1    GL442157    EFN63901.1    AJWK01016803    AJWK01016804    CP012526    ALC45664.1    GL888034    EGI68992.1    JXJN01021946    OUUW01000008    SPP83925.1    GL448558    EFN84237.1    CH933806    EDW15161.1    GL761846    EFZ22675.1    CCAG010007751    EZ422750    ADD19026.1    KZ288193    PBC34069.1    KQ435007    KZC13694.1    CH964272    EDW83787.2    KQ981885    KYN33845.1    CH479185    EDW38340.1    CM000070    EAL29051.1    KQ981095    KYN09520.1    CH940650    EDW67216.1    CH902629    EDV35307.1    CM000160    EDW97481.1    KQ977911    KYM98830.1    KK856724    PTY26331.1    GEGO01001947    JAR93457.1    CH480815    EDW42081.1    GECU01016201    JAS91505.1    AE014297    BT010036    AAF55160.1    AAQ22505.1    GEFM01002226    JAP73570.1    NEVH01006576    PNF37759.1    CH954181    EDV48984.1    GEBQ01020810    JAT19167.1    KQ414618    KOC67958.1    IACF01004223    LAB69817.1    GECZ01023473    GECZ01001284    JAS46296.1    JAS68485.1    GAMC01002370    GAMC01002368    JAC04186.1    CH916369    EDV92599.1    CM000364    EDX12850.1    DS235442    EEB15805.1    GEDC01030372    JAS06926.1    KK852609    KDR20314.1    GAKP01001528    GAKP01001527    JAC57425.1    ATLV01014583    KE524975    KFB39095.1    KQ971319    EFA00286.2    GEBQ01020965    JAT19012.1    HACA01028773    CDW46134.1    LBMM01001483    KMQ96238.1    MNPL01023368    OQR68756.1    KB631687    ERL85390.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000283053    UP000053268    UP000053240    + More
UP000007151    UP000183832    UP000069940    UP000249989    UP000075886    UP000008820    UP000076408    UP000000673    UP000075881    UP000075880    UP000279307    UP000075840    UP000053097    UP000002320    UP000075882    UP000075902    UP000075900    UP000215335    UP000075903    UP000076407    UP000075885    UP000075920    UP000000311    UP000092461    UP000069272    UP000192221    UP000092443    UP000092445    UP000092553    UP000007755    UP000092460    UP000268350    UP000008237    UP000009192    UP000092444    UP000078200    UP000242457    UP000076502    UP000095301    UP000005203    UP000007798    UP000078541    UP000008744    UP000001819    UP000078492    UP000008792    UP000007801    UP000002282    UP000078542    UP000001292    UP000095300    UP000000803    UP000235965    UP000008711    UP000053825    UP000001070    UP000000304    UP000009046    UP000027135    UP000079169    UP000030765    UP000007266    UP000036403    UP000192247    UP000030742   

PRIDE

H9IT84    Q9VFA0   

Pfam

PF04068   RLI        + More
PF04034   Ribo_biogen_C
PF00472   RF-1
PF01436   NHL
PF07716   bZIP_2
PF02893   GRAM
PF12717   Cnd1
PF12922   Cnd1_N

Interpro

IPR007177   TDD_dom        + More
IPR022968   Rbsm_biogenesis       
IPR007209   RNaseL-inhib_metal-bd_dom       
IPR036020   WW_dom_sf       
IPR001202   WW_dom       
IPR000352   Pep_chain_release_fac_I_II       
IPR011042   6-blade_b-propeller_TolB-like       
IPR001258   NHL_repeat       
IPR013017   NHL_repeat_subgr       
IPR004827   bZIP       
IPR016024   ARM-type_fold       
IPR024324   Condensin_cplx_su1_N       
IPR032682   Cnd1_C       
IPR026971   CND1/NCAPD3       
IPR007673   Condensin_cplx_su1       
IPR004182   GRAM       
IPR011989   ARM-like       
IPR011993   PH-like_dom_sf       

SUPFAM

SSF51045   SSF51045        + More
SSF48371   SSF48371       

Gene 3D

2.120.10.30     1.25.10.10     2.30.29.30    

CDD

cd00201  WW

ProteinModelPortal

H9IT84   A0A0L7K2Z8   A0A2A4J896   A0A3S2NJE2   A0A194Q7Q5   I4DRA6   + More
A0A0N1I7L4   I4DKN0   A0A2H1WE83   A0A212F190   S4PM14   A0A1L8DRI7   A0A1J1IMQ8   A0A182G3N2   A0A182Q9H2   A0A336M4S3   Q16T92   A0A182Y9Y9   A0A336LXE9   A0A1Q3F095   W5JD96   A0A182K0M3   A0A182IPW0   A0A3L8DBV6   A0A1S4GY80   A0A182IC25   A0A026WXS9   B0WIP7   A0A182L0F3   A0A182U365   A0A2M4BVP0   A0A1I8JUL0   A0A2M4BVK3   A0A2M4BVM1   A0A232FIK8   A0A2M4ANG1   A0A182UN42   A0A182XFU0   A0A2M3ZA24   A0A2M3Z933   A0A2M3Z8V5   A0A182PAP8   A0A182WHD0   E2ARN9   A0A1B0CKZ7   A0A182F5K4   A0A1W4VVE8   A0A1A9YMT0   A0A1B0A4M6   A0A0M4EMG2   F4W9Y2   A0A1B0BWQ8   A0A3B0JP72   E2BJ87   B4K5U9   E9I9K5   D3TMU8   A0A1A9V7Q8   A0A2A3ESG3   A0A154PQR9   A0A1I8MIZ5   A0A088AP90   B4NIS3   A0A151JTJ6   B4GLB6   Q294B3   A0A151IS67   B4LZY8   B3MX84   B4PS61   A0A151IDU2   A0A2R7X3U8   A0A147BRQ9   B4HDY9   A0A1I8PM79   A0A1B6IX41   Q9VFA0   A0A131Y5C1   A0A2J7RA98   B3P0T6   A0A1B6L647   A0A0L7RAU0   A0A2P2I712   A0A1B6H1D6   W8BS53   B4JGD0   B4QZ22   E0VQZ9   A0A1B6C090   A0A067RBS1   A0A1S3D6D3   A0A034WTA6   A0A084VMA1   D6WFA0   A0A1B6L5K7   A0A0K2V6N2   A0A0J7L0X7   A0A1V9X5Q8   U4U622  

PDB

5AP8     E-value=8.05189e-24,     Score=271

KEGG

101746309    K09140 pre-rRNA-processing protein TSR3 | (RefSeq) ribosome biogenesis protein TSR3 homolog

GO

GO:0006364   GO:0003747   GO:0003700   GO:0030490   GO:0005634   GO:0007076   GO:0016021  

PANTHER

PTHR20426   PTHR14222   PTHR14222:SF2  

Length:

240

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00805999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04612

outside

1  -  240

 

 

Pi

215.001851

Theta

196.797888

Tajima's D

0.291143

CLR

1.272577

CSRT

0.453027348632568

Interpretation

Uncertain