SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12932
Pre Gene Modal
BGIBMGA000467
Annotation
PREDICTED:_protocadherin-like_wing_polarity_protein_stan_[Bombyx_mori]
Full name
Protocadherin-like wing polarity protein stan      
Alternative Name
Protein flamingo
Protein starry night
Location in the cell
Extracellular   Reliability : 1.471 Nuclear   Reliability : 1.373 PlasmaMembrane   Reliability : 1.04
 

Sequence

CDS
ATGATACAACTATGGACGCATGTGGTGGTTGCTGCCCTCGCGGTAGTAACCACTCGTGCTTACCTCATCATCGTACCAGACTCCGCGCCGCCAGGGCATCTAGTCCTAGATGCCGCTGTCTACAAGCTCGGCTCTGAACGCACATACACCATAGACGTCCATCGCACAGCAAACTTCGTTCATCACATCCTAAGGGTTAACAAGACAAGTGGCCTGGTTACGCTTAGAAAACGACTTCGGTGCGACGGTATCCTTTATCCGAATCTCTTCACCTTCTACGTGGATTCTACTTCAGAGCGTATCCGTGATATTGATTACTACAGTCTACCTATTAGGATATTAGTAACGGGAGAAGACTGTAGTAGACGCCATGCAGACTTATACGATATTGATTTTGATAGAGTCTACGACCAAAACGATGCCGCGTTACAGTATGAAGATAGTTACACAATTAGAGATAAGAGAGAAGTCGTTTATCAAGAGAGTATAGACTGGAGGTTGTTAGAAGCAGAAGAGTTGGTCTCTAGTCAATATAATGTATTGTCCACGGCCTATCCGTGGTCAGACGCTATGTTTGAAGAATCCGTAGCGAGAAATAGAAGTAGAACAAAACGATCTCATAGTTTAGTACCTTTTGATATGGCCATAGATGTTAAAATAGCTGAAGCAAAACAATGGATATCAGAGACGTATGCCAGTTTCGCGATTCCGACGACGGACCGCTGGCAAGGGATTTGCTTGAAACAATCGCAGTTCGTGAATTCTTTGACGGCATTTTTGCCACGGACTGTACAGAAAATGTGTAAAGTGCAGTTTTTGGATGTAAGCGATCCGAGGTTCTTGATAGAGAATAGTCAAGGCGACTTGGTAGCCGCTGATGACGTATGCATACAAGAACCAATGTGGAAAGTATCAATTCTATTCACCTTCAATTGTGATCAGACCTACATCGTAGACTCGGATCATAGGCTCAAAATTGTATATCATCACAAGGAGTTGAACGACACCGACATAGCTAAAAGAGTGAAGAGAGAACTTCGAAATCAGTCTCCGTATTTTGAACAAGCACTTTACGTCGCTTCAGTAGCTGAGGAACAACCGCCTGGTGTGATCGTGACCACTGTGAAGGCACGAGATCCAGAAAACAGTCCCGTGACATATTCGATGTCAAGTCTACTCGACTCGAGATCGGCTGGCATGTTCGCTGTGGACACGAGATCGGGCGTGGTGACCACACAAGCAAGGCTGGATCGAGAGAGACTAGATGTACATTACTTCAGGGTTGTGGCTCAAGACGACACCTTTCCGCCAAGAAGCGGAACTACGACTTTACAGATTAACGTTCTGGATTGCAATGATCATTCGCCGGTCTTCGAGATGCAGCAGTACGAAGCTTCGGTTCGGGAAGGCGCCAGCTCTGGTACAACGGTCCTAACACTAAAGGCCACTGACCAGGATATAGGAAAAAATGCCGAGGTCGAATACACAATCGAACTAGTAACAGCAGATACTCTCAATCCAGAAGACGCTAGTGAATCAACGGATTCGGGTTCTAGTTCAGTTCAAGACGTGTTCAGAATAGATGGGCGTAGTGGAGCCCTTCTCACTAGAGCTTCCCTAGACCGTGAGAAGGTGGCCCGGTACACAGTCTTGGTGAAGGCCACGGACCAAGCCAGTCCCGTCTCTGATAGACTGTCTAGCACAGCAACGATTCACGTCAACATCATAGACGACAACGATAACTATCCACAGTTCAGCGAGAAGACGTACACGGTCAGCGTCGACGAAGATATCAGTGTAACCGATAATCCTGTCATAGCAAAGATCAAAGCAACAGACGCAGACGTCGGTGCTAACTCTGCAATAAGATACGCGATCATCGGCGGTAACACACAGATGCAGTTCTCCATAGACAGCCTGAGTGGCGATGTCTCGCTTGTCAAGACCCTGGACTACGAACAAGTCCGGAGCTACAGACTCGTGATCAGAGCTCAAGACGGAGGCAGTCCATCCAGATCAAACACCACCCAACTGTTGATCAACATTAGAGACGTGAATGACAACGCTCCGAGATTCTACACGTCGCTGTTCCAAGAGTCAGTCAGCGAAAATGTCCCTATTGGATACAGTATTGTTAGAGTACAAGCATACGATGCAGATGAAGGCGTCAACGCAGAACTAACTTACACTATGACGGATAAAGACTATACCGGGAACGTTGACCTTCCGATCACAATAGACCCGAGGTCAGGATGGGTCTATACTTCTGGGCAACTGGATAGGGAAACTCAAGCTAAATATCAACTATTGGTAACAGCGACGGATGGGGGCGACCCCCCGCGTTCAGCAACAGCTACCGTTGTGGTCGTCATACAAGACGTGAACGATAATGATCCGGTGTTTATGCCGGGACAATACGAAGTGGAACTGGCTGAAGACGAGCCCCCGGGGACACCTGTCGTGACCCTCACTGCCACCGACGCCGATGAGGATAACAGGTTACACTACGAGATCACAGGCGGGAACACTCGCGGCAGATTCTCCATAACGTCACAGAACGGTCGCGGCCTCATCACCGTAGCCCAGCCGTTGGACTTCAAGCAGGAGAGGCGGTACGTGCTGACCGTGTCCGCCACGGACTCCGGCGGCAGATCCGACACAGCGATGGTGCAAATCAACATTACCGACGCCAATAACTACGCGCCCGTATTCGAAAACGCACCTTACACTGCCTCTGTTTTTGAAGATGCACCGATCGGCACAACGGTCTTAGTCGTTTCAGCAACGGACAGCGATGTAGGAATCAATGCGCAGATCACGTACAGCCTCAGCTCAGAAATATCCAATGAGGCCGTCGCACACCACGACCAACAGTTCGTGATTAATCCGCAAACGGGAGCCATTACGACCAATAAGTTACTTGACAGAGAAACTATGAGTGGATATTTATTAACTGTGACCGCCCGAGATGGCGGCGTACCCTCCCTGTCTGACACAACCGACGTCGAGATATCGGTCGTCGATGTGAACGACAACGAGCCGGTCTTCAAGCAACAGCTCTACACCGCGAACATAATGGAGGACGCTTTAGTTGGTACATCGGTATCTCAGGTCGGCGCGACGGACGCTGACGTCGGTTTGAACGGTCGCATTCATTACGAATTAGACCCTAAAGACAGGGAGGAAGGCTCATTTGTCATTGATCCAGCTTCGGGTGTTATCAGAACAAACAAGGCTCTGGACAGAGAGTCAGTAGCGACTCACGACTTAAAGGCCGTGGCCATTGATGGCGGAACTCCACCACAAAGCTCGACTGTAATAGTCCACATAAAGATCGAAGATATCAACGACTCGCCACCGGTGTTCGAAAGCGATTGCCTCACGTTTTACATATCGGAGAACAGTCCCATCGGCACCACGATCGGAGAGATACGCGCGCACGATCCCGACGAAGGACCCAACGCTGTTGTGCACTACTCTATCAAAGGAGGTGACGATTCGAACAGTTTTTCGCTGGAAACTCGTCAAGGCTCCGACAAGGCTGAACTAGTGACAATGGTGGATCTCGACTACGAGAGCCCCAGGAAGAAGTACGAATTAGTTATCAGAGCGGCGAGCCCTCCGCTCTGGAATGACGTCAGAGTGGAAATACTCGTGACCGACGTCAACGACAACGCGCCAGTGATGAAGGACTTTCAAATCATTTTCAACAACTATAAGGATTGTTTTCCAGTGGGACCATTTGGCAGGGTGCCAGCTTATGACGCTGACGTCACAGACAAGTTGCAATATCGAATCCTATCTGGGAACAACGCAAACCTGATATTACTGAACGAAACGACCGGTTCTATGACGTTATCGCCTCAACTCAACACGAACGTGCCGAAACTGGCAACGATGGAAGTATCGGTCACCGATGGTGTGAACGAGATCAAAGCGATGATGCAACTTTCCGTGCGACTTATAACCGAGGAAATGTTACTCAACTCGATCACCGTCAGGTTGAATGACATGACGGCGGAACAGTTCCTCTCGCCACTCTTGGGATTCTTCATAGACGGCCTAGCGGCTATCATCCCGTGCCCTAAAGAGAACATTTACATCTTCAGCGTACAGGACGACACCGACGTAACTGGCAACATTTTGAACGTTTCGTTCTCGGCGCGGAGGCCGGACGCGGAGGTGGGGGTCGCGGGGGACCCTTCGCCGCACTACTCGCCGACGCACCTGCGCGAACGGGTCTACTTACACAGAACGACTCTAGCCAGACTCGCCACTGTACAGGTCCTACCGTTCGATGACAACATCTGCGTTCACGAGCCTTGTCTCAACTTTGAGGAGTGCCTGACCGTGCTCAAGTTCGGGAACGCTTCGGGCTTCGTGAATAGCGACTCGGTCCTGTTCAGACCGATATACCCTGTGACGTCATTCACTTGCCAATGTCCGGAAGGTTTTACCGGCTCGAGAGAACACTACATGTGCGACACAGAGGTGGACCTTTGCTTTTCGTCTCCCTGCGTCAACAACGGAACGTGCGTCCGGAGAGAAGGCGGCTACACGTGCGTCTGCGCCGCCGGCTTTACGGGTGTTAATTGCGAGACGATCTTAACTAAAGCGAGTTGCGAAGTCGACGGCGACGGCTCTATCTGCCGCAGCGGCTCGCAGTGCGTCGCGCGGCGGGAGGGCGGGATCCTATGTCAAGGGTGCTCCATAGACGCGGCCTACACGACGGCGGTCTGCGAGCTGAGGGCCAGGAGCTTCCCCGTGTCTTCGTTTCTGACTTTCCCCGGACTGAAGAGACGACACCGTATACATCTGAAGCTGAAATTCGCGACGCAAACAACATCGGGCTTGCTCCTTTACAACGGTCGCTACAACGAGCGGCACGACTTCCTCGCCCTGGAACTCGTCAGTTCGGAGGCGGGTCGCGGCGGAGGGCCCGGCCTGAGGTTCAGCTTCTCGTTGGGAGGAGGGAAGAGCGAGATCACTGTAGAGGGAAACGTTGGGGACGGCTCGTGGCATACTGTCGAGATAGAGTATTTCAATCGAACAATAACAATGATTTTGGATGACTGTGACAAGGTTTTATCTTTGGCTGGCGCCGCCGATTTTGGGCTCAAATACGCATGCGCGAATTTCACTCGTAAAGTCCTGCCTGCGCGGTGTGAAATCCCCACAGAAACATGTCACAGATTTCTCGATCTGACAGGACCTCTCCAAATCGGAGGCTTACCAAACATACCCAGTAGCTTCCAGGTGAAGAACAAGGACTTTGTCGGCTGCATATCCGACTTTTATATCGACCACAAGTTTATTGATCTCAATAGCTACGTGGCAGACAACGGCACGTTGGCCGGGTGCCCGGAGAAGCGTTCGAGGTGCAGCTCGGCGCCCTGCTACAACGGGGCCGAGTGCAGCGACCTCTGGGACACTTACATCTGCGACTGCAAGGAAGGACACACGGGCAAGGACTGCGCTGATTCTACGGGACCGCCGTGGCGCTTCGGTGGGGACGGCATGCTGTCATTTAACCCCCTGCTGAGGCCCATACAGCTGCCGTGGCTGAACGCCTTGTCGATACGGACCAGACAGAGGGACGCGTTTGTGATGTCCATACAAGTCGGGCAGAATAGTACTATCGTCATCAGTCTGAAATCCGGTCTCCTTCACTATTCGTACAACGGTGAGACAATGTATCTCCCAATGGCGACGTTGTCGGACGGAGCTTGGCACAGGATAGAGATAAAGTGGCTCGGCACCGACATCTCCGTCACCGTCGACTACGGGCTGCGGACCGTCCTCATGCCGATGCTGGCCAACAAGATACAGGGGCAATACATAGGGAAGATTCTGATTGGGGGACTGGACACTACAGCGGGACTTCTGGCCTCCGATGTTGGATTCTTTGAAGGTTGCATCCAGGATGTTCGTATTGGAACTGCTCAGTCGCTTCTCAATCGGCCAACGGTCAGAGAAAACGTGAGGGACGGCTGCCAATCTAGAGCCGATTGCATGCTGTCAATATGTCCTCCTTATAGTAAGTGTGTGACGTCATGGGACAGCAGCACGTGTACGTGCGAGGCGGGTCGCGTGGGCCCGCAGTGCGTGTCGGCATGCGAGCTCGGCCCGTGCGGCGCCGCGCGGTGCGTGCCCGACCAAACGCCCAAGGGCTACTCCTGCGCTTGCGAGCCTGGATATACTCTTACCACGTCAGGCTGCATAGAATCAGGGAAAGAAGAATGTCCAGGAGGATGGTGGGGTGGAAGCGCGTGTGGGCCGTGCGCTTGTGACGTCACACGTGGCTATCATCCACACTGCAACAAGGAGAACGGAAAATGCCATTGCAAAGAAAACCACTACAAGCCTGAAGGCACGGCGGAGTGTCTCCCGTGCCAGTGCTACGCGGCGGGGTCGGAGAACAGCTCGTGCGAGGCGGCGACCGGCCAGTGCCACTGCCGGCCCGGCGTCATCGGCCGCGCCTGCGACGCCTGCGCCAACGCCTACGCCGAAGTCACGCCCAACTCTGGATGTGAAGGTGACTGTATCGACCATACCCTAGGAGTGAATGACTGA
Protein
MIQLWTHVVVAALAVVTTRAYLIIVPDSAPPGHLVLDAAVYKLGSERTYTIDVHRTANFVHHILRVNKTSGLVTLRKRLRCDGILYPNLFTFYVDSTSERIRDIDYYSLPIRILVTGEDCSRRHADLYDIDFDRVYDQNDAALQYEDSYTIRDKREVVYQESIDWRLLEAEELVSSQYNVLSTAYPWSDAMFEESVARNRSRTKRSHSLVPFDMAIDVKIAEAKQWISETYASFAIPTTDRWQGICLKQSQFVNSLTAFLPRTVQKMCKVQFLDVSDPRFLIENSQGDLVAADDVCIQEPMWKVSILFTFNCDQTYIVDSDHRLKIVYHHKELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARDPENSPVTYSMSSLLDSRSAGMFAVDTRSGVVTTQARLDRERLDVHYFRVVAQDDTFPPRSGTTTLQINVLDCNDHSPVFEMQQYEASVREGASSGTTVLTLKATDQDIGKNAEVEYTIELVTADTLNPEDASESTDSGSSSVQDVFRIDGRSGALLTRASLDREKVARYTVLVKATDQASPVSDRLSSTATIHVNIIDDNDNYPQFSEKTYTVSVDEDISVTDNPVIAKIKATDADVGANSAIRYAIIGGNTQMQFSIDSLSGDVSLVKTLDYEQVRSYRLVIRAQDGGSPSRSNTTQLLINIRDVNDNAPRFYTSLFQESVSENVPIGYSIVRVQAYDADEGVNAELTYTMTDKDYTGNVDLPITIDPRSGWVYTSGQLDRETQAKYQLLVTATDGGDPPRSATATVVVVIQDVNDNDPVFMPGQYEVELAEDEPPGTPVVTLTATDADEDNRLHYEITGGNTRGRFSITSQNGRGLITVAQPLDFKQERRYVLTVSATDSGGRSDTAMVQINITDANNYAPVFENAPYTASVFEDAPIGTTVLVVSATDSDVGINAQITYSLSSEISNEAVAHHDQQFVINPQTGAITTNKLLDRETMSGYLLTVTARDGGVPSLSDTTDVEISVVDVNDNEPVFKQQLYTANIMEDALVGTSVSQVGATDADVGLNGRIHYELDPKDREEGSFVIDPASGVIRTNKALDRESVATHDLKAVAIDGGTPPQSSTVIVHIKIEDINDSPPVFESDCLTFYISENSPIGTTIGEIRAHDPDEGPNAVVHYSIKGGDDSNSFSLETRQGSDKAELVTMVDLDYESPRKKYELVIRAASPPLWNDVRVEILVTDVNDNAPVMKDFQIIFNNYKDCFPVGPFGRVPAYDADVTDKLQYRILSGNNANLILLNETTGSMTLSPQLNTNVPKLATMEVSVTDGVNEIKAMMQLSVRLITEEMLLNSITVRLNDMTAEQFLSPLLGFFIDGLAAIIPCPKENIYIFSVQDDTDVTGNILNVSFSARRPDAEVGVAGDPSPHYSPTHLRERVYLHRTTLARLATVQVLPFDDNICVHEPCLNFEECLTVLKFGNASGFVNSDSVLFRPIYPVTSFTCQCPEGFTGSREHYMCDTEVDLCFSSPCVNNGTCVRREGGYTCVCAAGFTGVNCETILTKASCEVDGDGSICRSGSQCVARREGGILCQGCSIDAAYTTAVCELRARSFPVSSFLTFPGLKRRHRIHLKLKFATQTTSGLLLYNGRYNERHDFLALELVSSEAGRGGGPGLRFSFSLGGGKSEITVEGNVGDGSWHTVEIEYFNRTITMILDDCDKVLSLAGAADFGLKYACANFTRKVLPARCEIPTETCHRFLDLTGPLQIGGLPNIPSSFQVKNKDFVGCISDFYIDHKFIDLNSYVADNGTLAGCPEKRSRCSSAPCYNGAECSDLWDTYICDCKEGHTGKDCADSTGPPWRFGGDGMLSFNPLLRPIQLPWLNALSIRTRQRDAFVMSIQVGQNSTIVISLKSGLLHYSYNGETMYLPMATLSDGAWHRIEIKWLGTDISVTVDYGLRTVLMPMLANKIQGQYIGKILIGGLDTTAGLLASDVGFFEGCIQDVRIGTAQSLLNRPTVRENVRDGCQSRADCMLSICPPYSKCVTSWDSSTCTCEAGRVGPQCVSACELGPCGAARCVPDQTPKGYSCACEPGYTLTTSGCIESGKEECPGGWWGGSACGPCACDVTRGYHPHCNKENGKCHCKENHYKPEGTAECLPCQCYAAGSENSSCEAATGQCHCRPGVIGRACDACANAYAEVTPNSGCEGDCIDHTLGVND

Summary

Description
Involved in the fz signaling pathway that controls wing tissue polarity. Also mediates homophilic cell adhesion. May play a role in initiating prehair morphogenesis. May play a critical role in tissue polarity and in formation of normal dendrite fields.
Similarity
Belongs to the G-protein coupled receptor 2 family.
Keywords
Alternative splicing   Calcium   Cell adhesion   Cell membrane   Complete proteome   Developmental protein   Disulfide bond   EGF-like domain   G-protein coupled receptor   Glycoprotein   Laminin EGF-like domain   Membrane   Phosphoprotein   Receptor   Reference proteome   Repeat   Signal   Transducer   Transmembrane   Transmembrane helix  
Feature
chain  Protocadherin-like wing polarity protein stan
splice variant  In isoform B.
EMBL
RSAL01000021    RVE52505.1    KQ460968    KPJ10225.1    KQ459324    KPJ01568.1    + More
AGBW02012392    OWR45133.1    NWSH01003030    PCG67077.1    BABH01013507    BABH01013508    BABH01013509    PCG67078.1    GAMC01008657    JAB97898.1    GDHF01033593    JAI18721.1    JRES01001567    KNC21967.1    CH963848    KRF97841.1    EDW73822.2    CH933808    EDW08840.2    CH940648    EDW61758.2    CH477189    EAT48765.2    CCAG010015976    JXJN01024530    CH916367    EDW01135.1    CH479183    EDW35502.1    CM000071    KRT02997.1    EAL26325.3    OUUW01000001    SPP74141.1    SPP74140.1    CH954179    EDV56582.2    AE013599    ADV37150.1    AF172329    AB028498    AFH08012.1    ACZ94388.1    AFH08011.1    AHN56089.1    AGB93404.1    CH480816    EDW47294.1    ATLV01016720    KE525103    KFB41578.1    CM002911    KMY92840.1    CM000158    EDW90095.2    APCN01005346    CH902619    EDV38071.2    KQ971372    EFA10758.2    AXCM01004264    KYB25255.1    AAAB01008905    EAA09721.2    AXCN02001921    UFQT01001301    SSX29908.1    UFQT01001209    SSX29510.1    CP012524    ALC40622.1    KB632203    ERL90083.1    APGK01059295    APGK01059296    APGK01059297    KB741292    ENN70478.1    DS232735    EDS45256.1    GEZM01078449    JAV62703.1    GDHF01021433    JAI30881.1    DS235008    EEB10421.1    CVRI01000015    CRK90013.1    KQ976745    KYM75492.1    GL446860    EFN87178.1    QOIP01000011    RLU17166.1    CM000362    EDX06524.1    KK107105    EZA59503.1    KQ982409    KYQ56738.1    ADTU01022770    GL435522    EFN73294.1    GL887844    EGI69806.1    KQ977606    KYN01428.1    KQ980487    KYN15907.1    KQ982014    KYN30620.1    NNAY01001867    OXU22682.1    KQ760869    OAD58786.1    AAZX01006718    KQ414614    KOC68875.1    KQ435774    KOX75090.1    GEDC01027355    GEDC01009259    JAS09943.1    JAS28039.1    KZ288222    PBC32045.1    GFXV01001270    MBW13075.1    ABLF02012017    GGMS01014303    MBY83506.1    GGFL01002420    MBW66598.1   
Pfam
PF00002   7tm_2        + More
PF02210   Laminin_G_2
PF00028   Cadherin
PF00053   Laminin_EGF
PF01825   GPS
PF00008   EGF
PF16489   GAIN
PF02793   HRM
Interpro
IPR000832   GPCR_2_secretin-like        + More
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR017981   GPCR_2-like       
IPR000742   EGF-like_dom       
IPR001791   Laminin_G       
IPR002126   Cadherin-like_dom       
IPR013032   EGF-like_CS       
IPR036445   GPCR_2_extracell_dom_sf       
IPR000203   GPS       
IPR002049   Laminin_EGF       
IPR001879   GPCR_2_extracellular_dom       
IPR020894   Cadherin_CS       
IPR013320   ConA-like_dom_sf       
IPR015919   Cadherin-like_sf       
IPR032471   GAIN_dom_N       
IPR001881   EGF-like_Ca-bd_dom       
SUPFAM
SSF49313   SSF49313        + More
SSF49899   SSF49899       
Gene 3D
PDB
6E6B     E-value=1.50581e-59,     Score=588

Ontologies

Topology

Subcellular location
Cell membrane  
SignalP
Position:   1 - 20,         Likelihood:  0.949812
 
 
Length:
2190
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
11.50617
Exp number, first 60 AAs:
11.49698
Total prob of N-in:
0.56729
POSSIBLE N-term signal
sequence
outside
1  -  2190
 
 

Population Genetic Test Statistics

Pi
244.598042
Theta
179.709943
Tajima's D
1.225412
CLR
0.593069
CSRT
0.72256387180641
Interpretation
Uncertain
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