Gene

KWMTBOMO12931

Pre Gene Modal

BGIBMGA000467

Annotation

PREDICTED:_protocadherin-like_wing_polarity_protein_stan_[Bombyx_mori]

Location

Bomo_Chr22(-):4494146-4518369      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.833 PlasmaMembrane   Reliability : 2.054

CDS

ATGAACACGTTTGTCGGGGTCCGCGTGGCCGCCGACCTGAGCACCGCGTGCGCCAACACGCCGCGCCTCTACGGAGCCGACGTCGTGGTCGCCGAGGGAATACTGCTCGAGCTCATGGACTACGAGCTGAGACAAGCCGGCTTGAACCTTACGCACAGTCAAGATAAGGACTATGTTCGGAATTTACTGAAATCAACGAACACAATACTAAACGTCGAATACGAGAGAGAATGGAAACGCATCCGCGAGCTGACGGGCCACGGCGCGGAACTGCTCGTGCAGAAGTTCGACGAGTACATAGCGGTGCTCGCCGAGAGCCAACACGACACCTACACCAGCCCCTTCGAGATCGTCACTAAGGACGTGGTGATCAGCGTGGACACAGTGACTTCGGAGTCCATTTACGGCTTCGAACCGACACAGTTGAACCGCCTCAACGTCGACTCCTACACGACCGAGAGAGTGGTCGCTCTGCCTGACACGTCGGCGTTCATACATTCGCCCATACAGGCAACCGGTTACTATGGCAACGGGAAAACTAACAAAAACAAGAAACCTTCCAGCCCCACCGTGTCCTTCCCGAAGTACAATAATTACGTGAGGAGCAAGAATAAGTTCGACAAATACACTAGAGTATTGCTTCCTTTGGATCTGTTGGGAATTTCAAATAATAATCTTCAAGACATAACGGACACGAACTACGAAACGCGCGCCGTGTTCGGCTACGTCCAGTACTCGAGGAATTCGTCTCAACTGATGCCCCTGCGCATGGACGACTCCGTCAGTCTTCGATGGGGCGTCAACATCACAATAGGATCGCCGATATTGCAAATAGCAGTCTTCGTACCGGAATCCATCTGGACCAGAGAGACCGGTGAAGGAAGCGAGGATAATTCCATCGAGCACAATGCTGAAGAAACCGAAGGCATCCTTTACGCAAACAGAGGCACAAAGCATTACCAGGCTAACCGCGTTAGCAGCCAGCGCCAGAACCGGCCACACACAAAAGAAGATCCTCCCGCGGAACACGGCCCCGTGCTCATACAACCCGCGTTCAAAAAACACGAAAGAAACGACCAGATACAGGAAAACGAGTCGTTGTTTGTCGCCGATAGAGACGACGGACCCAAAGTGATGGCGTTGGTCATGGACGGAGAGACCAGAAGCAACGCGACCGGTGTCGGCAAGAAGATGTACAGAAGTCTCAGCGGTATAAGACTGAAGAAGCCGATCAGACTACAGATTTGGCTCGATATAAACAGAGAAACGTTCGGTTCGAGAACTAACCCGCAATGTGTGCACTGGTCGACATTGAGAGGGTCCGGTGAATGGTCTCGCGTCGGTTGTCACACAGAAATAGACTACGATTGGTCGCCGTACTCTGAAGAGCCGCTACTAATCAACTGCACGTGCAATCATTTGTCTACGTTTGCCGTTCTCGTCGACGAAGTGGACGTTGAGTTCATTCCTGAGCCGTCCCTGCTCGAGTCAGTGACGTCATACACTGCATTCAGTATATCGCTCCCGCTCTTGCTCACGTCATGGGCCGCGCTCTGTCTCATTCGCGGGGGGGCTGCCACAGTATCGAACTCGATACACAAACATTTGATATTCAGCGTGTTTATGGCCGAGTTATTGTATTTGATCGCACTGAAGGCGCGAACGTCTTTAGTCCAGAATGAGTTCGCGTGCAAGGTGGTGGCGATGTCGCTGCACTACTGGTGGGTGTGCGGCGCGGGCTGGGCGGCGTGCGACGCGTGGCAGCTGCGCCGGCTGCTGCGCGAGCTGCGCGACGTCAACCACGCGCCGCTGTGCGCGCCGCTCGCCGCCGCCTACGCCGCGCCCGCACTCGTGCTCGCGCTCGCCGCCTCGCACCGCCCGCACCAGTACGGGAACGCGCTCTTTTGCTGGGTGAGCTGCCACGAGCCCGTGGTGTGGTGGGTGGTGATCCCGGCGGGAGTGTACGCGGCGGCCGCCTTCGTGTTCCTCGCCGGAGCCACCAGGGCGGCCTTCACGGTCAGGGACCACGTCACGGGATTCGGCAACTTGAGGATGCTGCTAGCGGTCAGCATCGTGTGTCTCCCTCTGCTGTGCGTGGCCTGGGCGAGCGCGTTGCTGCTGGGTAGCGAGGCGGGGGGCCGTCGCCACGCGCTCAGCGCCGTGCTGTCCGGCGCCGTATTGCTCCACGCCATCGCCGCTTCCCTCGGATACATCGCCTTCAACGTCCGCGTACGGGACAACTTGAAGAGGACGGTATTAAGGTGCATGGGGAAGAAAGTGCCTTTAGCCGATACGTCTGTCATAATCAGCAGCAGTGCCCATAACCTCTCACAAGTGAACAGATCATCATTGGCTTACCACAGCAGCACGGAGCCAGGTCGGCAGATGCGGAACATTGGCATTTCAGCGTCTTCCACGACATCTAGATCCACGACGAAAACTAGTTCTAGTCCATACAGCCGCAGCGATGGACAGCTACGTCACACCAGCACCTCGACGTCTAACTACAACACGAGCGCGAGCGACATGCCCGCCTACCTCCGGGGATTCGACTCCTCGTTACACACCAGAAAAGACGATGAGCGTCATCGGCGCAAGTCGGAGAGGTCGGAGAGGGGTACGGAGCGGGGGGAGCGCGGGGAGGGCACGGAGGGGAGCGACAGTGAGAGCGAGGGCAGCGCGCGGAGCCTCGAACTCGCCTCCAGCCACTCGTCAGACGACGACGACACCTCCACCAGGAGATCCAGCCACCCCCCCTCTGCCAACAGAGAGCGCATCGCCAGCGGAAGTGCCAACAGCTATTTACCAAATATAACGGAAGGCGCTCCTTTGGCTATGTCCCCAAGATGGCCGTCTCACGTGAGAGAAGACCAGAGCCGGCCGGAAATGGGTAGATGGTCGCAGGAGACCGGCTCCGACAACGAGGGCGCGAACATGGGCATCGCGACGCCATCGCCCAACCCGCTCCCCAACCCGGACCTCACGTCCGACGTGTACCTCAACCGGCACCGCCTCAAGCCGTCGATATTGGAGAACGTACACGACACCTATGTCGCTAGTGTCGACGCTTCGAGACTGCCTCTTGATAACAGGTACGGAGTGATGGAAGACGAATTAATGTACGGTGTTTTACCTATCGATCGAGAAAAACAAATGCCATACGATCCGAACTACCCGATATCCCCCACGATGTACCGGCTACCCGGGAACCCCTACGGCTCCAAAACCTACCTATCGTCGAGAACTTCGGATTACGGGTACAGTCCAACGAAATACATGAACGATACGAACGTATACGGGTCGAGGGATTTCCGTGACTCCGGGGTCTCGACGAGGGACCACGACGGCTACCCGCCCAGGGACTTCAGGGACTCTGGTATAGCTACGATGCTGAAGAACGACTATCAGAGGAAAATGGATGGGCACTACGGTGAATACAACGACCGGATGTCCGAGGGATCCGAAAAACATCACGGGCACGACAAATACTTGTTCCCGTACACGGCCGAGGAAGATCACGCAACTTTGCGTGGCTTGAGTCAGTCTCCTCGCACGCGTAGTGAGATCCAACATGCAGGGGAAGCACCACAGCAGATGGGGGCGCCACTGGCAAGCATGGGGGAAACAAGCGAGAAATCTACTACTGAAGACGACGCCGAAACAAGAGTATAA

Protein

MNTFVGVRVAADLSTACANTPRLYGADVVVAEGILLELMDYELRQAGLNLTHSQDKDYVRNLLKSTNTILNVEYEREWKRIRELTGHGAELLVQKFDEYIAVLAESQHDTYTSPFEIVTKDVVISVDTVTSESIYGFEPTQLNRLNVDSYTTERVVALPDTSAFIHSPIQATGYYGNGKTNKNKKPSSPTVSFPKYNNYVRSKNKFDKYTRVLLPLDLLGISNNNLQDITDTNYETRAVFGYVQYSRNSSQLMPLRMDDSVSLRWGVNITIGSPILQIAVFVPESIWTRETGEGSEDNSIEHNAEETEGILYANRGTKHYQANRVSSQRQNRPHTKEDPPAEHGPVLIQPAFKKHERNDQIQENESLFVADRDDGPKVMALVMDGETRSNATGVGKKMYRSLSGIRLKKPIRLQIWLDINRETFGSRTNPQCVHWSTLRGSGEWSRVGCHTEIDYDWSPYSEEPLLINCTCNHLSTFAVLVDEVDVEFIPEPSLLESVTSYTAFSISLPLLLTSWAALCLIRGGAATVSNSIHKHLIFSVFMAELLYLIALKARTSLVQNEFACKVVAMSLHYWWVCGAGWAACDAWQLRRLLRELRDVNHAPLCAPLAAAYAAPALVLALAASHRPHQYGNALFCWVSCHEPVVWWVVIPAGVYAAAAFVFLAGATRAAFTVRDHVTGFGNLRMLLAVSIVCLPLLCVAWASALLLGSEAGGRRHALSAVLSGAVLLHAIAASLGYIAFNVRVRDNLKRTVLRCMGKKVPLADTSVIISSSAHNLSQVNRSSLAYHSSTEPGRQMRNIGISASSTTSRSTTKTSSSPYSRSDGQLRHTSTSTSNYNTSASDMPAYLRGFDSSLHTRKDDERHRRKSERSERGTERGERGEGTEGSDSESEGSARSLELASSHSSDDDDTSTRRSSHPPSANRERIASGSANSYLPNITEGAPLAMSPRWPSHVREDQSRPEMGRWSQETGSDNEGANMGIATPSPNPLPNPDLTSDVYLNRHRLKPSILENVHDTYVASVDASRLPLDNRYGVMEDELMYGVLPIDREKQMPYDPNYPISPTMYRLPGNPYGSKTYLSSRTSDYGYSPTKYMNDTNVYGSRDFRDSGVSTRDHDGYPPRDFRDSGIATMLKNDYQRKMDGHYGEYNDRMSEGSEKHHGHDKYLFPYTAEEDHATLRGLSQSPRTRSEIQHAGEAPQQMGAPLASMGETSEKSTTEDDAETRV

Similarity

Belongs to the G-protein coupled receptor 2 family.

Uniprot

A0A2H1W4W7   A0A3S2M6G4   A0A194Q7S2   A0A0N0PBD5   A0A2A4J4K8   A0A2A4J5X8   + More
A0A0K8UWC5   A0A0K8TWT7   A0A1B0G6P0   A0A1A9VY21   A0A1A9ZX75   A0A1B0C2G8   A0A1A9YB23   A0A1B0BHL9   A0A1A9WYK3   B4P848   A0A1J1HPP8   B4HMT2   Q17PS6   A0A1W4XB87   A0A1S4EVA6   A0A0M4EEV1   A0A336MHS2   A0A336MVD4   A0A182NV34   D6X315   A0A139WBL5   A0A182JQ17   A0A1B0CFP2   A0A182RQF7   A0A182WMK2   A0A182VDC9   Q7PPU8   A0A182WS38   A0A182LHX3   A0A182P0K3   A0A182QFS4   A0A182MR91   A0A182U1V4   A0A182HXT4   W5JQ54   A0A182YBV7   U4UCN9   A0A1Y1KMS4   A0A182FCS1   A0A182G8Q4   A0A0T6AXN9   B0XD21   A0A1S4KAM1   A0A182SZM8   A0A1I8MRY5   A0A1I8NR16   A0A1I8NR14   A0A1I8NR21   A0A084VUD4  

Pubmed

26354079    17994087    17550304    17510324    18362917    19820115    + More
12364791    20966253    20920257    23761445    25244985    23537049    28004739    26483478    25315136    24438588   

EMBL

ODYU01006320    SOQ48063.1    RSAL01000021    RVE52505.1    KQ459324    KPJ01568.1    + More
KQ460968    KPJ10225.1    NWSH01003030    PCG67077.1    PCG67078.1    GDHF01021433    JAI30881.1    GDHF01033593    JAI18721.1    CCAG010015976    JXJN01024530    JXJN01014429    CM000158    EDW90095.2    CVRI01000015    CRK90013.1    CH480816    EDW47294.1    CH477189    EAT48765.2    CP012524    ALC40622.1    UFQT01001209    SSX29510.1    UFQT01001301    SSX29908.1    KQ971372    EFA10758.2    KYB25255.1    AJWK01010222    AAAB01008905    EAA09721.2    AXCN02001921    AXCM01004264    APCN01005346    ADMH02000839    ETN64889.1    KB632203    ERL90083.1    GEZM01078449    JAV62703.1    JXUM01152499    KQ571471    KXJ68168.1    LJIG01022594    KRT79748.1    DS232735    EDS45256.1    ATLV01016720    KE525103    KFB41578.1   

Proteomes

UP000283053    UP000053268    UP000053240    UP000218220    UP000092444    UP000078200    + More
UP000092445    UP000092460    UP000092443    UP000091820    UP000002282    UP000183832    UP000001292    UP000008820    UP000192223    UP000092553    UP000075884    UP000007266    UP000075881    UP000092461    UP000075900    UP000075920    UP000075903    UP000007062    UP000076407    UP000075882    UP000075885    UP000075886    UP000075883    UP000075902    UP000075840    UP000000673    UP000076408    UP000030742    UP000069272    UP000069940    UP000249989    UP000002320    UP000075901    UP000095301    UP000095300    UP000030765   

Pfam

PF02210   Laminin_G_2        + More
PF00002   7tm_2
PF00053   Laminin_EGF
PF01825   GPS
PF00008   EGF
PF16489   GAIN
PF00028   Cadherin
PF02793   HRM

Interpro

IPR013032   EGF-like_CS        + More
IPR036445   GPCR_2_extracell_dom_sf       
IPR000742   EGF-like_dom       
IPR001791   Laminin_G       
IPR017981   GPCR_2-like       
IPR000832   GPCR_2_secretin-like       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR032471   GAIN_dom_N       
IPR001881   EGF-like_Ca-bd_dom       
IPR013320   ConA-like_dom_sf       
IPR001879   GPCR_2_extracellular_dom       
IPR002049   Laminin_EGF       
IPR000203   GPS       
IPR002126   Cadherin-like_dom       
IPR020894   Cadherin_CS       
IPR015919   Cadherin-like_sf       
IPR009030   Growth_fac_rcpt_cys_sf       

SUPFAM

SSF49899   SSF49899        + More
SSF49313   SSF49313       
SSF111418   SSF111418       
SSF57184   SSF57184       

Gene 3D

4.10.1240.10    

ProteinModelPortal

A0A2H1W4W7   A0A3S2M6G4   A0A194Q7S2   A0A0N0PBD5   A0A2A4J4K8   A0A2A4J5X8   + More
A0A0K8UWC5   A0A0K8TWT7   A0A1B0G6P0   A0A1A9VY21   A0A1A9ZX75   A0A1B0C2G8   A0A1A9YB23   A0A1B0BHL9   A0A1A9WYK3   B4P848   A0A1J1HPP8   B4HMT2   Q17PS6   A0A1W4XB87   A0A1S4EVA6   A0A0M4EEV1   A0A336MHS2   A0A336MVD4   A0A182NV34   D6X315   A0A139WBL5   A0A182JQ17   A0A1B0CFP2   A0A182RQF7   A0A182WMK2   A0A182VDC9   Q7PPU8   A0A182WS38   A0A182LHX3   A0A182P0K3   A0A182QFS4   A0A182MR91   A0A182U1V4   A0A182HXT4   W5JQ54   A0A182YBV7   U4UCN9   A0A1Y1KMS4   A0A182FCS1   A0A182G8Q4   A0A0T6AXN9   B0XD21   A0A1S4KAM1   A0A182SZM8   A0A1I8MRY5   A0A1I8NR16   A0A1I8NR14   A0A1I8NR21   A0A084VUD4  

KEGG

101745884    K04600 cadherin EGF LAG seven-pass G-type receptor 1 | (RefSeq) protocadherin-like wing polarity pro

GO

GO:0016021   GO:0007166   GO:0005509   GO:0004930   GO:0007156   GO:0005886   GO:0005887   GO:0007155   GO:0098609   GO:0016020   GO:0007186   GO:0004888   GO:0008237   GO:0008152   GO:0016491   GO:0015930  

Length:

1223

Number of predicted TMHs:

7

Exp number of AAs in TMHs:

146.39034

Exp number, first 60 AAs:

0.01134

Total prob of N-in:

0.01798

outside

1  -  497

TMhelix

498  -  520

inside

521  -  531

TMhelix

532  -  551

outside

552  -  565

TMhelix

566  -  583

inside

584  -  603

TMhelix

604  -  623

outside

624  -  642

TMhelix

643  -  665

inside

666  -  685

TMhelix

686  -  708

outside

709  -  717

TMhelix

718  -  740

inside

741  -  1223

 

 

Pi

30.814654

Theta

198.298525

Tajima's D

2.037024

CLR

0.580064

CSRT

0.889955502224889

Interpretation

Uncertain