Silkworm Genome Informatics Database

Gene

KWMTBOMO12921

Pre Gene Modal

BGIBMGA000226

Annotation

PREDICTED:_cuticular_protein_RR-1_motif_47_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr22(+):4276260-4283134 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.772

CDS

ATGTCGTGGAGTTCGGGGAGTGTTTATTTCGTGTGTTTTTGTGCATTGGTGAGGACTCAAGTGATCCCAGGCAAGTCCAGAGCTAATGATGGAGATTATAATACAGTGAATACTGACGGATCTTTTGATTTCGGATACGCAAACAAAGACAGAGGATCGAGTTATCACTTAGCACACGGGACAGCTAATGGTGTCGTCGGAGGTCGATTTGGTGGAAAAGATCCCGCCACCGATACTGTCAAAGAGACAATATACACAGCCGGACCGAGAGGATTCCGTGCAAAAGGACCCAACGTACATAGACAGTTAGATCTCGATCAACGACCTCGGGGTCCGATCGGGAACAAAGATGACCCCTTCTTCGACCCCAATGAAGATCCCAGCTACGCTTTCAACTTTGACACCAGAACGTATTCGAAGAATGAAAACGCCGATAGCCGGGGCGATGTAAAAGGCCACTACTCGTATGTGGACGATATAGGAGAACGACACGATGTATCCTACATTGCCGGTCGAGATACCGGCTTCCACGTATCTTCAGCGCATCCAGACAACCCTGGAGTCATAGGATCGCCCTTCCATAGAGCACCGTTAGTGAGAGGAGAAACAAAAGCTAGAGGTCGTACGGCTGTCCAAAGAGGATTGGATGGATCATACAGGTTCATATCAGCGGGCCCCGATCAAAGGCGAACGGAAAGCAGTGACTCACAGGGTAATGTCAGAGGGTCCTACACGTTTTTGGACGATAAAGGAGTGCAAAGGACGGTAAACTACATAGCAGGTCCTGGAATTGGTTACCGGATAATCAAGAACAACAAAGATGCCATCCCATCCTATTTCCCGACGTTACCTAGTCCATACGACCCTACATTCACGAATGCTGCTCCTGGAGGATATTCTCCGCCCGCTGCTCCCGCTGGAGACTCTGATAGTGATGATGTTTTCAAAGGACCTGAAGGGACTGCGGCATCAGGACATGTAAAGCCCCCACCGTTTCAAGTAAGCGAGAGCGAGATACCCGAAGGCCCAGCGGGACCAATCACAAGCGCTGAAACGGATAATGCTCCTAACCTCCAAACGGACGGCGGCTATAGTCAGCCGGCTTTCAGTCAATCTGGCAACGAAGACCTAGGCTACGTAGACGAAGACGCAGGTTACGGTGGAAGCAAGCCGACGAAAGGACCAGGCAAGCCGGCGCGCCCTACCAACAAGCCTTATAGGCCGCAGAAGAAACCTTACGTACCGCTAAAGCCTACCCAGACTACATATATAGACGACAGCGATTACCCTGTAGATACAGATAAAAACAAACCTAGTTTCGGTGTAGGATACAATATTGATAGTCCGGTTCGACGCACGACTATAATTAGGAATATCGGGGACAGTTACTTTGATATTCCACCGGGCGTCTCTGTTAGGGCTCATGTTCAGAGTATAGATTTGTATCCTTTTGGTGCTAAGCCGGTATCCCCATCTGAAGCGTTGGAAAGCGAAAAAACATAG

Protein

MSWSSGSVYFVCFCALVRTQVIPGKSRANDGDYNTVNTDGSFDFGYANKDRGSSYHLAHGTANGVVGGRFGGKDPATDTVKETIYTAGPRGFRAKGPNVHRQLDLDQRPRGPIGNKDDPFFDPNEDPSYAFNFDTRTYSKNENADSRGDVKGHYSYVDDIGERHDVSYIAGRDTGFHVSSAHPDNPGVIGSPFHRAPLVRGETKARGRTAVQRGLDGSYRFISAGPDQRRTESSDSQGNVRGSYTFLDDKGVQRTVNYIAGPGIGYRIIKNNKDAIPSYFPTLPSPYDPTFTNAAPGGYSPPAAPAGDSDSDDVFKGPEGTAASGHVKPPPFQVSESEIPEGPAGPITSAETDNAPNLQTDGGYSQPAFSQSGNEDLGYVDEDAGYGGSKPTKGPGKPARPTNKPYRPQKKPYVPLKPTQTTYIDDSDYPVDTDKNKPSFGVGYNIDSPVRRTTIIRNIGDSYFDIPPGVSVRAHVQSIDLYPFGAKPVSPSEALESEKT

Uniprot

C0H6N9 A0A194Q7R4 A0A0N0PDX5 A0A212EY51 A0A212EN80 A0A2H1WHN6 + More
A0A2A4JTH3 A0A0L7L2H3 A0A0L7KRJ5 A0A1W4XQ55

Pubmed

19121390 19280704 26354079 22118469 26227816

EMBL

BABH01013528 BABH01013529 BR000548 FAA00550.1 KQ459324 KPJ01577.1 + More
KQ460041 KPJ18375.1 AGBW02011615 OWR46422.1 AGBW02013721 OWR42911.1 ODYU01008729 SOQ52579.1 NWSH01000610 PCG75337.1 JTDY01003356 KOB69678.1 JTDY01006539 KOB65913.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000007151 UP000218220 UP000037510 + More
UP000192223

PRIDE

C0H6N9

Pfam

PF00379 Chitin_bind_4

Interpro

IPR000618 Insect_cuticle

ProteinModelPortal

C0H6N9 A0A194Q7R4 A0A0N0PDX5 A0A212EY51 A0A212EN80 A0A2H1WHN6 + More
A0A2A4JTH3 A0A0L7L2H3 A0A0L7KRJ5 A0A1W4XQ55

KEGG

100379424 no KO assigned | (RefSeq) CPR47, BmorCPR47; cuticular protein RR-1 motif 47

GO

GO:0042302 GO:0016787 GO:0004046 GO:0005737 GO:0006520 GO:0006508 GO:0008237 GO:0008152 GO:0016491 GO:0015930

SignalP

Position: 1 - 19, Likelihood: 0.818997

Length:

500

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.421440000000001

Exp number, first 60 AAs:

0.42091

Total prob of N-in:

0.02365

outside

1 - 500

Pi

216.748834

Theta

175.691588

Tajima's D

0.721204

CLR

0.21159

CSRT

0.576521173941303

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics